Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005584.1 Hibiscus syriacus cultivar Beakdansim tig00012963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57409

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3097--3142
18
2.6
18
85
0
65
23
10
17
47
1.79
3469--3514
21
2.1
22
84
11
60
60
0
10
28
1.30
20181--20484
135
2.3
134
84
2
369
30
15
21
32
1.94
21534--21635
42
2.5
41
77
3
114
35
22
17
24
1.95
21241--21830
257
2.3
254
79
5
644
33
16
15
34
1.90
21791--21854
20
3.3
20
76
8
69
29
21
21
26
1.99
21597--22066
217
2.2
215
86
2
636
33
15
14
35
1.89
22083--22133
20
2.5
20
93
0
84
29
21
23
25
1.99
21340--22232
478
1.9
474
83
4
1181
33
15
15
35
1.89
22831--22904
3
24.0
3
83
5
94
37
0
1
60
1.05
23723--23747
8
3.1
8
100
0
50
64
0
24
12
1.27
24191--24228
12
3.2
12
81
3
51
28
2
2
65
1.19
24242--24277
2
18.0
2
100
0
72
50
0
0
50
1.00
24361--24406
22
2.1
22
83
0
56
50
0
2
47
1.13
24364--24429
31
2.1
32
85
2
89
45
0
1
53
1.09
24509--24543
17
2.0
18
88
5
54
40
5
8
45
1.58
25624--25798
74
2.4
73
79
7
181
29
18
17
34
1.94
29771--29838
3
22.0
3
82
5
82
38
0
1
60
1.06
30537--30644
31
3.4
31
65
25
89
24
20
19
36
1.95
30580--31815
76
16.4
76
92
3
1968
22
21
21
34
1.96
30519--31815
223
5.8
224
91
3
1944
22
21
21
35
1.96
31947--31998
3
17.3
3
83
0
68
38
0
1
59
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33285--33322
12
3.2
12
81
3
51
28
2
2
65
1.19
33438--33483
22
2.1
22
83
0
56
50
0
2
47
1.13
33441--33506
31
2.1
32
85
2
89
45
0
1
53
1.09
42993--43108
54
2.1
54
93
0
196
41
17
18
22
1.90
43476--43530
22
2.5
22
87
0
83
34
14
14
36
1.87
44456--45034
76
7.6
77
91
5
903
22
20
21
35
1.96
44404--45034
223
2.8
223
94
2
1057
22
20
21
34
1.97
45166--45233
3
22.0
3
82
5
82
38
0
1
60
1.06
45168--45241
15
5.6
14
73
20
70
40
0
1
58
1.07
45171--45241
12
5.4
12
73
17
61
40
0
1
57
1.07
46475--46512
12
3.2
12
81
3
51
28
2
2
65
1.19
46636--46681
22
2.1
22
83
0
56
50
0
2
47
1.13
46639--46704
31
2.1
32
85
2
89
45
0
1
53
1.09
46784--46818
17
2.0
18
88
5
54
40
5
8
45
1.58

Tables:   1

The End!