Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005586.1 Hibiscus syriacus cultivar Beakdansim tig00012969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67210

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
840--871
15
2.1
15
94
0
55
28
18
6
46
1.73
4630--4675
22
2.0
23
83
4
58
28
10
4
56
1.53
8162--8187
12
2.2
12
100
0
52
92
0
7
0
0.39
8511--8563
16
3.2
16
83
2
70
33
9
5
50
1.58
9168--9504
93
3.6
93
92
1
527
27
14
21
36
1.92
10366--11121
113
6.7
113
83
7
761
38
12
18
30
1.88
10345--11010
226
3.0
225
82
6
840
37
13
18
30
1.89
10922--11209
124
2.4
124
83
9
360
43
15
18
22
1.88
11349--11423
3
25.0
3
83
5
98
38
1
0
60
1.06
11351--11421
15
4.9
15
89
8
112
39
1
0
59
1.06
12687--12748
28
2.2
28
83
11
74
29
3
4
62
1.31
12910--12944
18
2.0
18
88
5
54
60
0
0
40
0.97
12997--13044
16
2.9
16
78
6
60
43
0
2
54
1.12
13690--13743
16
3.5
15
72
7
54
27
9
3
59
1.45
13685--13785
31
3.1
32
91
7
159
28
9
5
55
1.56
19403--19433
2
15.5
2
100
0
62
48
0
0
51
1.00
32182--32617
230
1.9
231
83
5
578
33
22
14
29
1.93
32180--32617
115
3.8
116
81
4
494
33
22
14
29
1.93
37501--37557
17
3.4
17
90
0
87
36
19
5
38
1.74
41482--41560
23
3.7
22
82
11
85
21
17
35
25
1.95
42882--42934
23
2.4
22
75
9
54
30
9
7
52
1.61
42940--42984
19
2.3
19
84
3
54
31
13
6
48
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43810--43880
34
2.1
33
84
7
90
22
28
15
33
1.95
57814--57848
17
2.0
18
88
5
54
45
8
5
40
1.58
57928--57991
31
2.1
30
85
2
83
54
1
0
43
1.09
59388--59457
12
5.4
13
79
17
74
57
1
0
41
1.08
59395--59458
3
21.0
3
78
9
67
59
1
0
39
1.07
59388--59457
26
2.8
25
85
12
83
57
1
0
41
1.08
59581--61136
75
21.4
75
91
4
2039
35
21
21
22
1.96
59581--61136
226
7.1
224
91
5
2092
35
21
21
22
1.96
60751--61145
65
6.1
65
97
0
756
37
18
21
23
1.94
61802--61855
21
2.5
22
84
3
74
35
14
14
35
1.88
62217--62324
54
2.0
54
92
0
180
22
20
16
40
1.91

Tables:   1

The End!