Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005587.1 Hibiscus syriacus cultivar Beakdansim tig00012971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72600

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20101--20125
12
2.1
12
100
0
50
52
32
16
0
1.44
29659--29695
18
2.1
18
90
10
58
0
16
5
78
0.93
30177--30272
3
32.0
3
84
0
120
64
0
2
33
1.05
30522--31314
114
6.9
114
97
1
1460
29
19
14
36
1.91
31952--32362
52
7.9
52
95
1
693
38
21
15
24
1.92
32973--33010
16
2.4
16
82
8
51
57
7
5
28
1.49
33330--33377
1
48.0
1
87
0
60
0
8
0
91
0.41
33330--33380
11
4.8
11
88
7
79
0
9
0
90
0.46
33330--33380
21
2.4
21
93
0
84
0
9
0
90
0.46
45649--45685
18
2.1
18
90
10
58
0
16
5
78
0.93
46166--46258
3
31.0
3
84
0
114
64
0
2
33
1.06
46605--46694
30
3.0
30
100
0
180
20
23
13
43
1.86
48093--48121
6
4.8
6
100
0
58
34
0
65
0
0.93
48817--49099
20
14.0
21
71
16
120
30
24
12
32
1.92
48797--49098
40
7.5
41
68
14
137
31
25
12
31
1.92
49021--49112
40
2.3
41
84
3
125
32
19
11
35
1.88
49046--49111
20
3.3
20
74
19
66
31
21
13
33
1.92
48821--49130
60
5.2
60
73
10
233
30
24
11
33
1.91
49268--49304
16
2.4
16
86
8
51
29
5
0
64
1.15
52050--52571
55
9.5
55
87
4
603
29
24
17
27
1.97
53901--53979
8
10.2
8
73
13
51
6
12
0
81
0.88
53887--53971
23
3.9
21
77
21
68
7
11
0
81
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53896--53972
7
10.6
7
77
14
68
5
12
0
81
0.84
53969--54021
17
3.3
16
87
10
65
11
20
0
67
1.21
53969--54021
15
3.3
16
87
10
65
11
20
0
67
1.21
54008--54052
19
2.4
19
84
0
63
8
15
0
75
1.03
58298--58335
17
2.4
17
86
8
53
73
5
2
18
1.14
60249--60279
3
10.3
3
92
0
53
64
0
32
3
1.09
62348--62382
6
5.8
6
86
0
52
60
20
2
17
1.49
62349--62394
18
2.6
18
92
0
74
54
26
2
17
1.54
63912--63988
21
3.7
21
82
3
84
27
15
33
23
1.95
64399--64439
21
2.0
21
85
0
55
36
36
12
14
1.84
64557--64655
42
2.4
42
89
0
153
16
18
37
28
1.92
66503--66544
22
1.9
22
90
0
66
23
16
42
16
1.88
66651--66688
20
2.0
20
84
5
51
44
13
15
26
1.83
66659--66701
19
2.2
20
87
4
61
39
16
20
23
1.92
71528--71596
29
2.4
29
85
7
95
37
4
1
56
1.28
71548--71593
23
2.0
23
86
0
65
36
2
2
58
1.22

Tables:   1

The End!