genome.fa.s5588.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005588.1 Hibiscus syriacus cultivar Beakdansim tig00012973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140283

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009--1047	15	2.7	15	84	4	53	56	2	0	41	1.13
1133--1190	31	1.9	31	92	3	100	31	1	25	41	1.66
1725--1910	15	12.9	15	85	8	228	51	0	1	46	1.10
1758--1852	14	7.1	12	78	18	75	52	0	1	46	1.07
1817--1852	12	3.1	11	85	14	54	52	0	0	47	1.00
1675--1909	127	1.8	129	84	7	327	51	0	2	46	1.14
1931--2252	32	10.4	32	72	19	195	33	0	12	54	1.38
1946--2001	18	3.3	18	69	19	57	28	0	12	58	1.34
1918--1983	14	4.5	14	71	15	53	33	0	4	62	1.16
1986--2028	22	2.0	22	100	0	86	34	0	13	51	1.42
1958--2363	54	7.5	54	75	17	321	33	0	13	53	1.40
1931--2222	79	3.5	82	85	7	337	34	0	11	53	1.38
2145--2252	30	3.5	31	87	7	159	33	0	12	54	1.37
2094--2363	83	3.3	83	79	14	294	34	0	12	53	1.38
2201--2344	79	1.8	77	92	2	243	31	0	15	53	1.42
2311--2353	22	2.0	22	100	0	86	34	0	13	51	1.42
2378--2436	31	1.9	31	92	0	100	42	10	6	40	1.65
22562--22588	4	6.8	4	100	0	54	25	0	0	74	0.83
34555--34579	11	2.3	11	100	0	50	84	0	16	0	0.63
35354--35465	59	1.9	59	85	3	154	39	4	8	47	1.55
35547--35610	31	2.1	31	100	0	128	25	12	17	45	1.83
35940--36014	37	2.0	37	100	0	150	21	18	30	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36824--36869	23	2.0	23	95	0	83	34	10	28	26	1.90
36827--36876	23	2.2	23	85	0	64	36	10	36	18	1.84
37849--37928	29	2.5	33	76	21	96	43	11	6	38	1.66
37861--37960	29	3.3	30	85	4	130	42	13	7	38	1.71
61771--62278	253	2.0	253	96	0	926	37	14	19	27	1.91
67066--67161	41	2.3	40	77	5	102	37	9	10	42	1.71
71377--71544	84	2.0	84	97	0	318	27	18	13	39	1.89
79549--79649	50	2.0	50	86	0	139	22	37	8	30	1.85
80348--80414	30	2.2	30	97	0	125	34	25	16	23	1.95
82409--82453	21	2.1	21	87	0	63	31	28	24	15	1.96
84116--84424	151	2.1	149	93	1	528	28	16	20	34	1.94
86002--86110	23	4.7	23	91	0	110	21	23	25	29	1.99
86032--86115	23	3.7	23	91	0	123	21	19	26	33	1.97
91471--91539	30	2.3	30	95	5	122	11	10	21	56	1.64
91941--92006	15	4.4	15	92	0	114	36	6	19	37	1.77
91936--92022	15	5.9	15	83	2	104	40	5	19	34	1.76
91941--92022	30	2.8	30	92	1	130	37	6	19	36	1.77
92010--92074	20	3.3	19	91	6	103	44	9	12	33	1.74
92237--92340	29	3.5	29	79	19	101	52	1	0	44	1.18
92325--92400	29	2.5	29	83	12	91	51	0	1	47	1.09
92353--92400	14	3.4	14	75	13	53	58	0	0	41	0.98
92353--92399	19	2.5	20	82	6	62	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92290--92392	29	3.6	28	76	14	93	50	0	0	47	1.14
92358--92411	21	2.7	20	85	5	65	53	0	0	46	1.00
92600--92719	42	2.9	42	97	0	222	45	19	20	15	1.86
94188--94264	40	1.9	40	100	0	154	33	14	31	20	1.93
95955--95984	14	2.1	14	100	0	60	56	23	6	13	1.60
99477--99517	18	2.2	19	91	4	66	68	4	0	26	1.10
100625--100689	28	2.3	28	100	0	130	24	27	29	18	1.98
101680--101769	42	2.2	41	91	2	144	22	40	7	30	1.82
103723--103768	20	2.3	20	92	0	74	52	6	4	36	1.47
108072--108174	45	2.3	45	83	8	122	33	17	20	28	1.95
108181--108238	20	2.7	20	86	10	71	31	20	20	27	1.98
108927--108975	21	2.6	18	83	9	62	18	22	30	28	1.97
114258--114326	23	3.0	23	83	8	95	27	26	26	20	1.99
115300--115461	64	2.5	65	77	8	170	32	19	21	26	1.97
115430--115503	23	3.6	19	71	15	58	27	22	28	21	1.99
116261--116478	103	2.1	103	95	0	400	25	13	23	37	1.91
116485--116562	23	3.3	23	81	1	93	25	19	21	33	1.97
116763--116822	2	30.0	2	100	0	120	50	0	0	50	1.00
121309--121397	22	4.0	22	97	1	151	24	26	26	21	1.99
121324--121385	13	5.4	13	68	28	59	25	25	27	20	1.99
123091--123135	21	2.1	21	87	0	63	15	24	28	31	1.96
125918--125960	21	2.0	21	86	0	59	51	20	2	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126948--127017	29	2.5	29	90	4	108	28	15	14	41	1.86

Tables:   1

The End!