genome.fa.s5589.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005589.1 Hibiscus syriacus cultivar Beakdansim tig00012982_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57923

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126--223	44	2.2	44	85	1	133	24	22	7	45	1.77
348--554	79	2.6	79	80	1	252	30	24	11	33	1.91
510--1017	66	7.7	68	83	5	605	31	23	14	30	1.95
1384--1606	57	3.9	59	83	8	257	32	20	13	33	1.92
1384--1610	59	3.9	58	83	8	270	32	20	13	33	1.92
2613--2643	3	10.3	3	100	0	62	64	0	35	0	0.94
2805--2856	24	2.2	24	89	0	77	36	15	0	48	1.45
2811--2865	24	2.3	24	96	0	101	32	14	0	52	1.42
5162--5263	45	2.3	45	82	3	134	25	19	5	49	1.71
5162--5276	45	2.6	45	81	2	133	26	20	5	46	1.72
5393--5868	68	7.0	68	84	1	551	30	22	15	31	1.95
5393--5868	136	3.5	135	86	1	621	30	22	15	31	1.95
6241--6477	59	4.0	59	88	2	327	32	19	13	35	1.91
9942--9980	20	2.0	20	89	0	60	33	23	10	33	1.88
18742--18798	21	2.7	21	86	5	80	24	17	28	29	1.97
18784--18836	23	2.3	23	93	0	88	18	22	28	30	1.98
28009--28164	31	5.0	31	92	1	260	19	17	23	39	1.92
31059--31214	31	5.0	31	96	1	278	19	19	23	38	1.93
34097--34252	31	5.0	31	94	1	269	19	19	22	39	1.93
37144--37299	31	5.0	31	95	1	269	19	19	22	38	1.93
39407--39561	64	2.4	64	82	4	179	33	19	18	29	1.95
40218--40342	31	4.0	31	93	2	207	17	18	24	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42310--42402	35	2.9	31	76	16	107	36	21	20	21	1.95
42295--42424	66	2.0	66	87	3	190	35	21	23	20	1.96
42294--42403	31	3.4	31	75	14	114	36	20	22	20	1.95
42313--42415	31	3.2	30	74	15	98	36	23	19	20	1.95
42487--42511	12	2.1	12	100	0	50	52	16	16	16	1.76
42487--42530	19	2.3	19	88	7	63	52	15	15	15	1.75
44547--44594	11	4.6	10	80	10	51	25	22	31	20	1.98
44555--44596	11	3.9	11	87	6	68	21	19	35	23	1.96
44547--44594	21	2.3	21	96	0	87	25	22	31	20	1.98
48222--48258	19	2.0	18	89	5	56	32	5	0	62	1.18
52089--52143	7	7.6	7	78	13	58	80	0	18	1	0.81
52087--52143	16	3.7	15	81	9	62	78	0	19	1	0.83
54007--54113	41	2.6	40	84	8	135	24	24	23	28	2.00
54033--54106	20	3.5	21	70	5	60	25	22	21	29	1.99
54324--54388	21	3.4	20	70	24	59	23	21	13	41	1.89
54286--54441	36	4.4	36	86	0	206	25	19	14	41	1.89
54381--54441	15	3.7	15	71	23	50	26	21	13	39	1.90
55115--55369	91	2.8	91	86	1	325	39	16	20	23	1.92
55282--55628	115	3.0	117	87	6	510	36	14	23	24	1.93

Tables:   1

The End!