genome.fa.s559.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000559.1 Hibiscus syriacus cultivar Beakdansim tig00001092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117577

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3867--3935	32	2.2	32	97	2	131	34	0	17	47	1.48
11228--11264	3	12.3	3	88	11	58	64	0	2	32	1.07
13920--13958	2	19.5	2	100	0	78	51	0	0	48	1.00
19537--19561	2	12.5	2	100	0	50	48	0	0	52	1.00
20283--20341	31	1.9	31	92	0	100	42	5	5	47	1.47
20547--20632	28	3.1	27	65	18	68	44	13	1	40	1.52
20933--20978	17	2.7	17	83	12	51	60	2	0	36	1.09
21013--21118	14	8.1	13	71	16	76	51	1	0	46	1.11
21013--21141	64	2.0	65	92	1	215	51	1	0	46	1.10
21034--21118	40	2.2	37	85	12	109	50	1	0	48	1.08
21072--21159	26	3.4	28	74	15	98	53	2	0	44	1.13
21013--21164	64	2.4	64	86	5	209	53	1	0	44	1.11
25679--25716	19	2.0	19	89	0	58	52	15	2	28	1.56
27149--27180	17	1.9	16	93	6	55	0	59	31	9	1.29
27150--27197	20	2.4	20	82	0	60	2	58	29	10	1.43
34989--35032	23	2.0	22	90	4	70	70	2	0	27	0.99
35222--35249	14	2.0	14	100	0	56	50	7	0	42	1.30
35827--36078	134	1.9	132	84	3	335	33	22	14	29	1.93
37748--37821	37	2.0	38	89	5	116	21	9	8	60	1.53
43273--43301	2	14.5	2	100	0	58	48	0	0	51	1.00
54599--54690	17	5.2	17	69	16	53	69	2	7	20	1.24
54673--54710	20	1.9	20	88	0	58	63	2	7	26	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54772--54812	2	20.5	2	100	0	82	51	0	0	48	1.00
55280--55348	34	2.0	34	94	0	120	31	14	11	42	1.82
55810--56999	105	11.3	105	83	6	1181	21	19	25	32	1.97
57558--57654	33	2.8	33	74	13	88	38	8	23	29	1.84
57736--58016	36	8.0	36	75	9	175	40	13	19	26	1.88
57590--57786	65	2.9	67	80	5	175	38	8	20	32	1.82
57688--57997	138	2.3	137	82	0	386	40	12	19	27	1.88
57772--57960	102	1.9	102	86	2	272	40	12	19	28	1.87
57873--58012	72	1.9	72	92	0	235	37	12	21	27	1.90
57881--58050	36	4.8	36	84	5	157	40	15	21	22	1.90
57885--58058	72	2.4	72	85	4	219	38	15	20	25	1.92
58496--58531	18	2.0	18	88	0	54	41	30	8	19	1.81
58946--58994	22	2.2	22	92	0	80	28	14	24	32	1.94
58958--59001	22	2.0	22	86	0	61	31	13	22	31	1.93
59649--59717	8	8.9	7	77	16	57	0	14	7	78	0.96
59641--59723	16	5.1	16	74	20	59	0	14	8	77	0.99
60880--60918	8	5.0	8	84	6	53	58	12	17	10	1.61
60880--60918	15	2.5	15	87	4	51	58	12	17	10	1.61
61439--61478	18	2.2	18	95	0	71	37	12	30	20	1.89
63606--63646	21	2.1	19	86	9	55	65	0	7	26	1.18
63561--63655	18	5.2	17	67	21	50	68	2	8	21	1.27
63740--63774	2	17.5	2	93	0	61	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64243--64311	34	2.0	34	94	0	120	31	14	11	42	1.82
73167--73207	6	6.7	6	91	2	64	51	14	2	31	1.56
76043--76924	316	2.8	317	92	1	1437	35	14	14	35	1.87
79275--79317	2	21.5	2	95	0	77	48	0	2	48	1.14
82144--82177	17	1.9	18	88	5	52	61	0	0	38	0.96
84165--84215	23	2.2	23	96	0	93	17	45	13	23	1.84
87174--87218	24	1.9	23	82	13	56	24	8	6	60	1.51
90447--90472	13	2.0	13	100	0	52	15	15	30	38	1.88
90675--90717	21	2.0	21	100	0	86	32	13	9	44	1.76
90868--90927	18	3.4	17	77	9	57	61	6	3	28	1.37
90839--90903	29	2.2	29	81	5	78	64	7	3	24	1.34
90865--90927	17	3.5	17	75	14	56	61	6	3	28	1.36
94626--94671	21	2.2	21	100	0	92	26	21	28	23	1.99
104726--104789	26	2.5	25	90	5	101	29	17	21	31	1.96
110349--110382	16	2.1	16	88	0	50	61	8	0	29	1.26

Tables:   1

The End!