genome.fa.s5590.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005590.1 Hibiscus syriacus cultivar Beakdansim tig00012984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151829

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1209--1253	23	2.0	23	90	0	72	33	22	20	24	1.97
2068--2234	20	8.4	20	84	6	178	27	26	18	26	1.98
2064--2141	41	1.9	41	94	0	138	37	25	17	19	1.94
2109--2243	20	6.8	20	89	3	193	24	26	19	29	1.98
2502--2555	14	3.5	14	77	22	63	11	20	20	48	1.80
2484--2554	33	2.2	33	84	0	88	19	19	21	39	1.93
4516--4608	20	4.7	20	86	0	105	35	24	21	18	1.95
4595--4661	19	3.8	18	72	20	61	46	23	17	11	1.82
4625--4670	19	2.4	19	88	0	65	45	23	19	10	1.82
4667--4768	19	5.6	19	71	13	70	13	20	23	42	1.88
4715--4768	20	2.8	19	86	5	72	16	24	24	35	1.95
5308--5355	18	2.7	18	86	0	78	14	12	47	25	1.79
6672--6709	20	1.9	20	94	0	67	52	21	15	10	1.72
6985--7030	20	2.3	20	84	0	56	23	10	41	23	1.86
6995--7033	20	2.0	20	94	0	69	17	10	46	25	1.80
7218--7329	20	5.6	20	76	12	113	23	17	25	33	1.96
7198--7335	41	3.4	41	80	7	165	23	16	23	36	1.94
7321--7397	21	3.7	21	96	0	136	22	23	15	38	1.92
7260--7395	41	3.3	41	83	7	125	22	21	19	36	1.96
13271--13296	6	4.3	6	100	0	52	15	50	34	0	1.45
20498--20656	54	2.9	54	94	0	282	20	20	25	33	1.96
23334--23386	20	2.7	20	100	0	106	35	15	18	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27244--27273	12	2.5	12	100	0	60	43	0	20	36	1.52
29015--29187	88	1.9	89	90	2	276	46	13	5	34	1.67
29741--29793	26	2.0	26	92	0	88	41	11	11	35	1.77
29779--29836	28	2.1	28	83	6	73	50	17	0	32	1.46
29825--29879	29	1.9	29	88	3	85	60	14	0	25	1.35
34102--34200	18	5.6	18	89	2	139	38	5	24	32	1.77
34102--34200	36	2.8	36	93	3	166	38	5	24	32	1.77
34770--34877	38	2.8	38	83	2	110	40	33	9	16	1.80
34954--35016	28	2.2	30	85	5	85	36	25	9	28	1.87
34829--35027	91	2.1	94	82	7	235	36	29	9	24	1.87
36432--36531	49	2.0	49	100	0	200	30	14	22	34	1.93
38000--38038	2	19.5	2	100	0	78	51	0	0	48	1.00
41233--41564	31	10.8	31	93	2	546	36	12	12	38	1.81
41834--41903	34	2.1	32	86	5	95	21	28	15	34	1.94
42186--42227	21	2.0	21	95	0	75	26	28	21	23	1.99
42263--42306	21	2.1	21	95	0	79	15	27	43	13	1.85
42339--42418	21	4.1	21	75	18	82	15	27	36	21	1.93
42362--42391	15	2.0	15	100	0	60	13	26	33	26	1.93
42341--42412	36	2.0	36	88	0	108	16	27	33	22	1.95
42508--42567	29	2.0	31	93	6	106	43	16	6	33	1.74
42726--42772	22	2.1	22	96	0	85	34	2	8	55	1.42
43846--43893	19	2.5	20	82	3	62	29	12	6	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45145--45204	29	2.0	31	93	6	106	43	16	6	33	1.74
50536--50900	31	11.8	31	90	2	522	35	11	12	39	1.80
51281--51341	29	2.1	29	93	0	104	31	1	14	52	1.52
52073--52126	4	13.8	4	90	3	74	51	18	0	29	1.46
52073--52134	20	3.2	20	88	2	72	50	20	1	27	1.58
54299--54356	24	2.4	24	83	16	68	55	3	0	41	1.17
55003--55032	14	2.1	14	93	0	51	50	6	0	43	1.28
55037--55074	19	2.0	20	84	5	51	55	2	0	42	1.14
55112--55154	14	3.1	14	86	0	59	23	0	30	46	1.52
55377--55827	225	2.0	225	96	0	839	33	16	27	22	1.96
57278--57318	21	2.0	21	85	0	55	48	2	0	48	1.14
57451--57503	24	2.3	23	83	3	61	49	1	0	49	1.12
64878--64955	19	4.2	19	71	21	74	20	37	28	14	1.91
64904--64933	15	2.0	15	100	0	60	26	33	26	13	1.93
64884--64954	36	2.0	36	86	2	99	21	35	28	15	1.94
64878--64956	20	4.2	20	70	18	78	20	37	27	13	1.91
65039--65080	21	2.0	21	95	0	75	23	21	28	26	1.99
65109--65148	20	1.9	21	85	10	55	37	35	10	17	1.83
65364--65433	34	2.1	32	86	5	95	31	15	30	22	1.95
66407--66450	15	3.0	15	80	6	54	65	2	31	0	1.05
68222--68290	30	2.2	30	80	15	77	34	5	15	43	1.71
68379--68457	21	4.1	20	75	18	78	20	39	27	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68406--68435	15	2.0	15	100	0	60	26	33	26	13	1.93
68385--68455	35	2.0	36	88	2	108	21	36	28	14	1.92
68483--68526	21	2.1	21	100	0	88	13	45	27	13	1.81
68562--68603	21	2.0	21	95	0	75	23	21	28	26	1.99
68632--68671	20	1.9	21	85	10	55	37	35	10	17	1.83
68886--68955	34	2.1	32	86	5	95	31	15	30	22	1.95
70411--70435	7	3.6	7	100	0	50	40	0	0	60	0.97
70455--70554	38	2.7	37	81	4	123	39	7	7	47	1.58
70500--70524	13	1.9	13	100	0	50	44	0	8	48	1.32
70478--70615	60	2.3	61	82	8	176	39	7	5	47	1.53
70564--70681	34	3.3	35	83	9	123	45	9	1	43	1.46
85478--85557	23	3.7	22	82	8	85	22	32	26	18	1.97
85478--85539	23	2.7	23	90	2	90	20	32	25	20	1.98
102190--102504	159	2.0	158	96	3	589	31	17	18	32	1.95
106466--106510	18	2.5	18	96	0	81	13	11	22	53	1.71
111809--111866	20	2.7	20	86	10	71	22	22	22	32	1.98
115842--115901	20	2.7	22	85	10	79	23	25	20	31	1.98
119857--119914	3	19.3	3	81	0	71	63	3	1	31	1.21
129023--129085	21	3.0	21	97	0	117	50	25	4	19	1.66
129023--129102	42	1.9	41	85	10	108	50	25	5	20	1.68
134187--134221	16	2.2	16	100	0	70	22	28	14	34	1.93
134986--135010	10	2.5	10	100	0	50	20	8	8	64	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139895--139948	26	2.1	26	100	0	108	22	14	25	37	1.93
141376--141403	2	14.0	2	100	0	56	50	0	0	50	1.00
141657--141689	16	2.1	16	100	0	66	36	27	6	30	1.81
144276--144379	53	2.0	53	94	0	181	47	12	18	22	1.82
146671--146915	82	3.0	83	72	9	194	31	17	17	33	1.93
146712--146915	82	2.5	83	75	4	198	31	17	16	34	1.92
150291--150331	16	2.6	16	92	0	64	7	65	12	14	1.45

Tables:   1

The End!