genome.fa.s5591.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005591.1 Hibiscus syriacus cultivar Beakdansim tig00012985_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182235

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2177--2227	27	1.9	27	92	4	86	29	27	19	23	1.98
2177--2224	13	3.7	13	75	8	53	31	25	18	25	1.98
4071--4724	218	3.0	217	97	1	1226	27	16	20	35	1.94
5779--5818	20	2.0	20	85	9	55	37	2	2	57	1.26
13313--13375	27	2.3	27	100	0	126	49	3	12	34	1.57
15554--15592	2	19.5	2	100	0	78	48	0	0	51	1.00
19313--19360	14	3.2	15	79	8	53	45	0	0	54	0.99
27896--28003	55	2.0	55	96	0	198	43	11	23	22	1.85
27904--28026	55	2.2	55	88	2	176	44	14	21	19	1.86
28687--28837	72	2.1	72	94	0	266	36	12	26	24	1.91
32254--32495	125	1.9	125	86	1	342	33	15	25	25	1.95
33693--33806	37	3.1	37	87	2	167	33	23	16	26	1.96
33693--33832	37	3.8	36	80	6	149	33	22	18	25	1.97
33693--33832	73	1.9	73	84	5	185	33	22	18	25	1.97
34192--34704	54	9.5	54	94	0	882	36	19	26	18	1.94
34699--35100	106	3.8	106	84	3	425	30	17	25	27	1.97
34682--35095	55	7.7	54	82	6	400	29	16	25	28	1.97
46407--46445	20	2.0	19	90	5	60	58	0	0	41	0.98
55876--55947	36	2.0	36	89	7	112	44	1	25	29	1.62
56425--56515	32	2.8	32	89	3	119	50	15	14	19	1.78
56439--56515	32	2.4	32	95	0	136	55	11	15	16	1.68
63613--63647	18	1.9	18	88	0	52	25	31	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64396--64471	30	2.5	31	93	4	127	39	11	28	19	1.87
65539--65614	30	2.5	31	95	4	136	40	11	27	19	1.87
66440--66517	35	2.3	35	82	6	97	58	17	6	16	1.58
68203--68270	32	2.2	32	83	2	84	42	11	7	38	1.69
69268--69302	8	4.4	8	92	0	52	34	0	65	0	0.93
69271--69301	4	7.8	4	92	0	53	29	0	70	0	0.87
75918--75986	35	2.0	35	85	0	93	42	24	1	31	1.64
76687--76780	35	2.7	35	81	6	109	41	24	1	32	1.62
77832--77862	11	2.7	12	90	10	55	74	0	0	25	0.82
77994--78039	20	2.3	20	96	0	83	58	13	4	23	1.52
78719--79431	229	3.1	229	97	1	1326	44	7	8	39	1.64
79694--79752	20	3.0	19	80	14	66	52	15	15	16	1.75
79709--79754	20	2.4	19	86	13	67	54	10	17	17	1.70
79498--79966	180	2.6	180	88	3	676	42	14	17	26	1.87
82618--82651	18	1.9	18	88	5	52	14	26	32	26	1.95
83155--83329	60	2.9	60	80	7	187	33	19	4	42	1.70
83763--83795	16	2.1	16	100	0	66	45	0	24	30	1.53
87987--88074	45	1.9	47	88	4	135	30	9	21	38	1.85
90485--90511	8	3.4	8	100	0	54	14	0	0	85	0.61
94433--94505	8	10.1	8	70	24	56	72	0	17	9	1.10
94437--94504	7	9.7	7	73	23	54	73	0	17	8	1.08
94437--94496	13	4.9	12	75	17	61	73	0	18	8	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94457--94511	16	3.6	16	75	20	55	74	0	16	9	1.06
95792--95866	37	2.1	36	85	7	98	36	18	20	25	1.95
95873--96140	55	5.1	51	78	5	250	29	17	24	28	1.97
95987--96316	55	6.0	55	83	4	328	29	19	22	28	1.98
95875--96294	110	3.9	109	79	5	390	29	18	24	28	1.98
95877--96308	165	2.7	164	79	7	447	29	18	23	28	1.98
103090--103121	15	2.1	15	94	0	55	59	0	3	37	1.13
103315--103400	36	2.4	36	86	5	111	44	1	9	45	1.43
115113--115167	26	2.1	27	82	3	67	61	1	1	34	1.17
115184--115215	16	2.0	16	100	0	64	68	0	0	31	0.90
115912--115982	36	2.0	36	91	5	117	38	14	9	38	1.79
117353--117399	16	3.1	15	88	8	69	29	0	2	68	1.02
120671--120757	35	2.5	34	80	12	97	55	10	8	26	1.61
121355--121389	18	1.9	18	100	0	70	28	20	28	22	1.98
124570--124612	21	2.0	21	100	0	86	44	13	23	18	1.86
125479--125632	83	1.9	82	89	4	238	28	0	10	60	1.34
128200--128241	2	21.0	2	100	0	84	50	0	0	50	1.00
128407--128495	30	3.0	30	71	19	78	48	0	1	50	1.08
129238--129272	18	2.0	18	88	5	54	48	5	11	34	1.63
132613--132708	39	2.4	39	83	8	97	43	3	3	50	1.33
132781--132827	20	2.4	19	85	3	67	72	0	4	23	1.02
132784--132827	13	3.4	13	81	6	54	72	0	4	22	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134025--134079	27	2.0	27	100	0	110	45	10	10	32	1.74
144502--144529	2	14.0	2	100	0	56	50	0	0	50	1.00
145898--145934	16	2.3	16	85	0	56	10	18	27	43	1.83
147122--147285	17	9.9	17	70	17	80	73	6	3	16	1.17
147120--147174	11	4.8	11	78	8	56	81	3	1	12	0.89
147120--147318	48	4.2	46	73	16	140	73	6	2	17	1.15
147123--147316	96	2.0	98	88	7	288	73	6	2	17	1.17
147275--147330	12	4.6	12	84	6	51	71	3	0	25	1.02
147288--147330	12	3.5	13	90	9	72	74	0	0	25	0.82
147204--147330	14	9.2	13	69	21	55	73	5	1	19	1.12
147288--147341	25	2.2	24	87	9	74	74	0	3	22	0.98
147969--148029	3	20.0	3	78	18	56	70	0	0	29	0.88
147969--148027	27	2.2	26	82	8	75	71	0	0	28	0.87
147968--148029	21	2.8	22	81	15	83	69	0	0	30	0.89
147975--148030	15	3.8	15	77	17	64	67	0	0	32	0.91
150125--150179	18	3.2	17	82	7	67	16	10	43	29	1.82
150173--150267	49	1.9	49	93	4	165	17	30	34	16	1.93
159510--159571	23	2.9	21	85	7	81	20	35	25	17	1.95
159512--159597	21	4.1	20	74	14	66	22	34	26	16	1.95
164520--164645	24	5.3	24	85	3	139	38	17	17	26	1.92
164520--164645	47	2.6	47	81	6	148	38	17	17	26	1.92
166205--166833	218	2.9	217	91	1	1001	30	21	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167479--167530	22	2.4	22	86	0	77	38	11	13	36	1.81
167473--167535	22	2.9	22	78	4	74	41	11	12	34	1.79
167908--168065	54	3.0	52	81	5	185	27	20	14	37	1.92
169240--169279	13	2.9	14	85	14	57	0	20	0	80	0.72
169358--169498	69	2.0	72	88	4	216	34	18	21	24	1.96
171532--171572	6	6.7	6	86	5	55	53	9	17	19	1.70
171650--171777	43	3.0	42	87	3	184	35	19	9	35	1.84
172243--172312	36	1.9	36	94	5	124	30	14	15	40	1.87
173696--173729	2	17.0	2	100	0	68	50	0	0	50	1.00
175650--175699	12	4.3	12	72	10	50	44	2	2	52	1.24
175664--176183	22	23.6	22	86	4	690	40	0	10	48	1.41
176207--176266	31	1.9	31	89	0	93	45	8	3	43	1.50

Tables:   1

The End!