genome.fa.s5592.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005592.1 Hibiscus syriacus cultivar Beakdansim tig00012992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97576

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446--573	58	2.2	57	85	7	166	47	7	6	38	1.58
2363--2413	23	2.2	23	85	0	66	39	17	5	37	1.74
2631--2655	11	2.3	11	100	0	50	92	0	8	0	0.40
3767--3819	27	2.0	27	88	0	79	45	24	9	20	1.81
8388--8533	60	2.4	61	77	8	149	47	5	14	32	1.67
9410--9462	26	2.0	27	82	10	65	37	3	22	35	1.72
10072--10204	60	2.2	59	81	6	144	41	10	9	39	1.71
15751--15794	2	22.0	2	95	0	79	52	0	0	47	1.00
15815--16029	114	1.9	114	87	0	313	44	15	7	32	1.76
22825--22887	21	2.9	21	85	4	81	20	36	25	17	1.94
22869--22908	21	1.9	21	89	0	62	25	40	25	10	1.86
23274--23299	13	2.0	13	100	0	52	23	0	0	76	0.78
25197--25259	32	2.0	32	96	0	117	36	12	3	47	1.58
27188--27239	15	3.5	15	72	0	50	50	3	1	44	1.31
28302--28351	21	2.4	21	96	0	91	56	4	0	40	1.18
28326--28743	223	1.9	229	89	5	663	40	15	12	31	1.85
28323--28802	223	2.1	230	85	7	660	41	15	11	30	1.84
30377--30441	32	2.0	32	100	0	130	46	33	4	15	1.66
33754--33790	2	19.0	2	94	5	67	51	0	0	48	1.00
33803--33936	22	6.0	22	69	20	75	51	0	0	48	1.00
33833--33914	33	2.5	32	83	11	103	58	0	0	41	0.98
38421--38469	25	2.0	25	91	0	80	44	22	12	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41991--42015	2	12.5	2	100	0	50	52	0	48	0	1.00
47789--47814	3	8.7	3	100	0	52	69	0	30	0	0.89
50425--50474	15	3.1	16	83	16	68	30	0	0	70	0.88
50429--50475	18	2.8	18	87	12	73	27	0	0	72	0.85
53551--53810	95	2.7	95	85	7	332	32	16	18	33	1.93
55522--55586	21	3.4	21	66	24	61	24	20	12	43	1.86
55406--55823	36	11.4	36	77	15	376	26	17	13	43	1.86
55421--55793	78	5.0	78	74	16	333	24	16	13	44	1.85
55675--55795	42	3.0	42	78	12	155	23	16	14	46	1.83
55398--55929	216	2.5	216	91	1	877	26	16	13	43	1.85
55842--55977	73	1.9	73	81	6	168	26	19	13	41	1.88
57089--57132	3	14.7	3	100	0	88	31	0	0	68	0.90
58040--58071	16	2.0	16	93	0	55	18	3	6	71	1.20
58237--58314	29	2.6	30	89	2	113	39	7	14	38	1.74
59323--59392	23	3.0	23	83	6	88	32	22	22	21	1.98
61130--61189	30	2.0	31	87	9	88	35	25	10	30	1.88
62407--62481	30	2.7	27	82	15	75	48	4	1	46	1.29
62429--62471	19	2.3	19	84	8	52	53	2	0	44	1.13
62601--62676	17	4.5	17	70	20	61	47	0	1	51	1.09
63435--63803	20	18.5	20	85	4	458	34	26	18	20	1.96
64476--64522	24	2.0	24	87	8	69	25	14	21	38	1.92
64697--64721	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67023--67348	19	18.4	19	80	15	405	47	17	20	14	1.82
67023--67348	33	9.2	34	82	13	321	47	17	20	14	1.82
67051--67370	161	2.0	157	93	3	552	46	16	21	14	1.83
67051--67370	52	6.0	52	93	4	550	46	16	21	14	1.83
67377--67478	19	5.6	19	85	12	151	14	23	17	44	1.86
67585--67621	14	2.6	14	91	0	65	45	21	0	32	1.52
67616--67688	12	6.0	12	67	20	53	57	16	1	24	1.47
67602--67674	38	1.9	38	97	0	137	53	16	1	28	1.51
69489--69623	19	7.6	19	76	16	137	45	24	19	10	1.81
69545--69601	14	3.7	14	77	20	60	45	24	21	8	1.80
69526--69618	33	2.8	33	98	0	177	47	22	20	9	1.79
69489--69623	52	2.5	54	75	18	131	45	24	19	10	1.81
69619--69747	19	7.3	19	75	17	125	8	17	28	45	1.77
69619--69710	33	2.8	33	93	3	150	7	18	28	45	1.76
69791--70170	93	4.1	93	98	0	744	46	18	12	22	1.83
69791--70170	185	2.0	186	98	0	744	46	18	12	22	1.83
71877--71965	14	5.6	14	74	23	79	42	23	24	8	1.83
71869--71965	33	2.9	33	93	0	176	44	21	24	9	1.82
71876--71957	19	4.9	18	73	21	72	43	21	25	8	1.81
72150--72220	33	2.2	33	92	0	115	47	18	22	11	1.80
72402--72456	22	2.5	22	81	0	74	20	16	40	23	1.91
72602--72795	20	9.6	20	82	5	221	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72602--72795	60	3.2	60	83	0	253	19	19	25	35	1.95
72788--72864	21	3.7	20	70	13	57	27	16	23	32	1.96
72850--72901	20	2.6	20	96	0	95	21	13	26	38	1.90
74968--74996	14	2.1	14	100	0	58	13	0	34	51	1.42
77754--77810	21	2.7	21	97	0	105	31	17	10	40	1.84
78953--79084	30	4.4	30	86	0	167	35	12	9	42	1.75
78991--79038	15	3.2	15	71	11	53	31	12	6	50	1.65
82586--82620	14	2.5	14	100	0	70	54	0	14	31	1.40
82982--83048	33	2.0	33	94	0	116	29	10	20	38	1.86
83227--83308	32	2.6	32	86	0	101	25	15	13	45	1.83
83288--83356	32	2.2	32	86	0	93	31	15	11	40	1.84
86635--86945	158	2.0	159	92	0	525	40	17	12	30	1.86
90457--90496	14	2.9	14	86	13	57	27	0	27	45	1.54
93086--93135	21	2.4	21	100	0	100	30	22	18	30	1.97

Tables:   1

The End!