Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005593.1 Hibiscus syriacus cultivar Beakdansim tig00013005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64631
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:7594 original size:21 final size:21
Alignment explanation
Indices: 7570--7630 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
7560 AACTTTGAAA
7570 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
7591 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
7605 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
7626 AAATG
1 AAATG
7631 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:7676 original size:36 final size:36
Alignment explanation
Indices: 7562--7681 Score: 172
Period size: 35 Copynumber: 3.3 Consensus size: 36
7552 TGGTAACCAA
7562 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
7599 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* * *
7634 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATATTT
1 CTTTGAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
*
7671 -ATTGAAAAATG
1 CTTTGAAAAATG
7682 ATAATGGGAT
Statistics
Matches: 77, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
35 36 0.47
36 14 0.18
37 27 0.35
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.43
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:12752 original size:21 final size:21
Alignment explanation
Indices: 12726--12770 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
12716 GATTTTTGGG
* *
12726 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
12747 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
12768 CAA
1 CAA
12771 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:14435 original size:149 final size:149
Alignment explanation
Indices: 14254--14557 Score: 590
Period size: 149 Copynumber: 2.0 Consensus size: 149
14244 GAGTCGAGGG
14254 TCTACGCGGTTCTTTGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCGGTTCTTTGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTTGAAAGACACAT
*
14319 ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCATAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
14384 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
14403 TCTACGCGGTTCTTTGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCGGTTCTTTGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTTGAAAGACACAT
*
14468 ACTTGATCCATAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCATAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
14533 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
14552 TCTACG
1 TCTACG
14558 GGGCACTTCG
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 153 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (149 bp):
TCTACGCGGTTCTTTGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTTGAAAGACACAT
ACTTGATCCATAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:14580 original size:23 final size:23
Alignment explanation
Indices: 14536--14580 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14526 ATCATTATAT
*
14536 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
14559 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
14581 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:15344 original size:21 final size:21
Alignment explanation
Indices: 15320--15380 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
15310 AACTTTGAAA
15320 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
15341 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
15355 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
15376 AAATG
1 AAATG
15381 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:15426 original size:36 final size:36
Alignment explanation
Indices: 15312--15430 Score: 161
Period size: 35 Copynumber: 3.3 Consensus size: 36
15302 TGGTAACCAA
15312 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
15349 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* * * *
15384 CTTTGAAAAATAGTTTTTCAGAGTTTGGTAGATATTT
1 CTTTGAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
*
15421 -GTTGAAAAAT
1 CTTTGAAAAAT
15431 CATAATGAGA
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
35 35 0.47
36 14 0.19
37 26 0.35
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:16580 original size:21 final size:21
Alignment explanation
Indices: 16556--16599 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
16546 ATTGGTTGTA
16556 AAAATATTCAAGAAATACTCT
1 AAAATATTCAAGAAATACTCT
16577 AAAATATTCAAGAAATACTCT
1 AAAATATTCAAGAAATACTCT
16598 AA
1 AA
16600 GGCCGTAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.27
Consensus pattern (21 bp):
AAAATATTCAAGAAATACTCT
Found at i:21603 original size:19 final size:20
Alignment explanation
Indices: 21579--21626 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
21569 AATGATTTTC
* *
21579 TTTTGAAAGCTAAAATG-GA
1 TTTTGAAAACTAAAATGAAA
21598 TTTTGAAAACTAAAATGAAA
1 TTTTGAAAACTAAAATGAAA
21618 TTTTGAAAA
1 TTTTGAAAA
21627 AAGATTTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.48, C:0.04, G:0.15, T:0.33
Consensus pattern (20 bp):
TTTTGAAAACTAAAATGAAA
Found at i:24260 original size:21 final size:22
Alignment explanation
Indices: 24236--24287 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
24226 GGTCATTTGT
*
24236 ATAATTTACCTTT-TATTTTAA
1 ATAATTTACCTTTAAATTTTAA
* *
24257 ATAATATACCTTTAAATTTTCA
1 ATAATTTACCTTTAAATTTTAA
24279 ATAAATTTA
1 AT-AATTTA
24288 TAATTATACG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 12 0.48
22 8 0.32
23 5 0.20
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAATTTACCTTTAAATTTTAA
Found at i:25493 original size:15 final size:15
Alignment explanation
Indices: 25473--25501 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
25463 TTTATATACA
25473 TTTTATTATCAAATT
1 TTTTATTATCAAATT
25488 TTTTATTATCAAAT
1 TTTTATTATCAAAT
25502 AATAGTTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTATTATCAAATT
Found at i:27124 original size:24 final size:24
Alignment explanation
Indices: 27097--27146 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
27087 TTATTTGTAG
27097 TTATAGTATGTAAT-AATAATATTA
1 TTATAGTAT-TAATAAATAATATTA
** *
27121 TTATTTTATTAGTAAATAATATTA
1 TTATAGTATTAATAAATAATATTA
27145 TT
1 TT
27147 TATTATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 3 0.14
24 19 0.86
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (24 bp):
TTATAGTATTAATAAATAATATTA
Found at i:29906 original size:51 final size:50
Alignment explanation
Indices: 29840--29964 Score: 142
Period size: 51 Copynumber: 2.5 Consensus size: 50
29830 CAATAAAAAC
* ** **
29840 GCGCCCTCTGCACCGCGCTATACGATGATTTGGCGCCACGTGGGGTATAGA
1 GCGCCCCCTGCACCGCGCTATACGATGAGCTAACGCCACGT-GGGTATAGA
* * * *
29891 GCGCCCCCTGTACCGCGCTATACGGTGAGCTAATGCCACGTGGGTATAGC
1 GCGCCCCCTGCACCGCGCTATACGATGAGCTAACGCCACGTGGGTATAGA
* *
29941 GCGGCCCCTGCAGCGCGCTATACG
1 GCGCCCCCTGCACCGCGCTATACG
29965 CCACGTAGGG
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 29 0.47
51 33 0.53
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (50 bp):
GCGCCCCCTGCACCGCGCTATACGATGAGCTAACGCCACGTGGGTATAGA
Found at i:30058 original size:48 final size:50
Alignment explanation
Indices: 29988--30097 Score: 129
Period size: 48 Copynumber: 2.2 Consensus size: 50
29978 TAGCGCGGAT
*
29988 CAGGTACCGC-ACTATACCTTTA-CTG-CCTAATTTTATATAGCACGGGGG
1 CAGGTACCGCGACTATACCTTTACCTGACATAATTTTATATAGCAC-GGGG
* * *
30036 TAGGTACCGCGAC-ATACGTTTACTCCTGACATAATTTTATATAGCGCGGGG
1 CAGGTACCGCGACTATACCTTTA--CCTGACATAATTTTATATAGCACGGGG
30087 CAGGTACCGCG
1 CAGGTACCGCG
30098 TTTTGTATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
48 17 0.33
49 2 0.04
51 17 0.33
52 16 0.31
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (50 bp):
CAGGTACCGCGACTATACCTTTACCTGACATAATTTTATATAGCACGGGG
Found at i:34242 original size:18 final size:18
Alignment explanation
Indices: 34219--34254 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
34209 AAAGGCGATG
34219 GCGGCATCATATATGGCT
1 GCGGCATCATATATGGCT
34237 GCGGCATCATATATGGCT
1 GCGGCATCATATATGGCT
34255 ACGGTGGCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (18 bp):
GCGGCATCATATATGGCT
Found at i:35959 original size:110 final size:111
Alignment explanation
Indices: 35765--35985 Score: 374
Period size: 110 Copynumber: 2.0 Consensus size: 111
35755 ATTATAAAAA
* * *
35765 TTAATTCTTAATCTAATAATCATGCATTAAATGAATTAACTAATTATTAATAATAATTTAAATTA
1 TTAATTATTAATCTAATAATCATGCATTAAATGAAATAACTAAATATTAATAATAATTTAAATTA
*
35830 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
*
35876 TTAATTATTAA-CATAATAATCATGCATTAAAT-AAATAACTAAATATTACTAATAATTTAAATT
1 TTAATTATTAATC-TAATAATCATGCATTAAATGAAATAACTAAATATTAATAATAATTTAAATT
35939 AAATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
65 AAATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
35986 ATGATTTCCA
Statistics
Matches: 104, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
110 75 0.72
111 29 0.28
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.36
Consensus pattern (111 bp):
TTAATTATTAATCTAATAATCATGCATTAAATGAAATAACTAAATATTAATAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
Found at i:36123 original size:12 final size:10
Alignment explanation
Indices: 36109--36149 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
36099 ACCTTAAAAA
*
36109 GAGAGTATTT
1 GAGAGAATTT
36119 GAGAGAAATTT
1 GAGAG-AATTT
36130 -AGAGAATTT
1 GAGAGAATTT
36139 GAGAGAATTT
1 GAGAGAATTT
36149 G
1 G
36150 GTGTGATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 5 0.18
10 19 0.68
11 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (10 bp):
GAGAGAATTT
Found at i:36326 original size:50 final size:51
Alignment explanation
Indices: 36272--36398 Score: 148
Period size: 51 Copynumber: 2.5 Consensus size: 51
36262 AGATATACAG
* * * * * * **
36272 GTATAGCACGCTGCAGGGGTCGCGTTATA-CTCACGTGGTGCCAGCTCACC
1 GTATAGCGCGATGCAGGGGGCGCGCTATACCCCACGTGGCGCCAAATCACC
* *
36322 GTATAGCGCGATGTAGGGGGCGCGCTATACCCCACGTGGCGCCAAATCATC
1 GTATAGCGCGATGCAGGGGGCGCGCTATACCCCACGTGGCGCCAAATCACC
*
36373 GTATAGCGCGGTGCAGGGGGCGCGCT
1 GTATAGCGCGATGCAGGGGGCGCGCT
36399 TTACTGCTAA
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 24 0.38
51 40 0.62
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.19
Consensus pattern (51 bp):
GTATAGCGCGATGCAGGGGGCGCGCTATACCCCACGTGGCGCCAAATCACC
Found at i:36942 original size:28 final size:28
Alignment explanation
Indices: 36881--36945 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 28
36871 CAAGTGATGT
*
36881 AGTTCAACATTCAAGTGAAATGTAACGTA
1 AGTTCAACATCCAAGTGAAATGTAAC-TA
36910 A-TTCAACATCCAAGTGAAATGTAA-TA
1 AGTTCAACATCCAAGTGAAATGTAACTA
36936 CAGTTCAACA
1 -AGTTCAACA
36946 ACTATAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
26 2 0.06
27 1 0.03
28 29 0.88
29 1 0.03
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (28 bp):
AGTTCAACATCCAAGTGAAATGTAACTA
Found at i:38338 original size:2 final size:2
Alignment explanation
Indices: 38331--38363 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
38321 CACCCAAGAT
38331 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38364 GTTGTCACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:41499 original size:55 final size:55
Alignment explanation
Indices: 41433--41547 Score: 203
Period size: 55 Copynumber: 2.1 Consensus size: 55
41423 TATTAATTTT
* * *
41433 TACATAGTTTGGCCATCGCCATCTTATGCCTTTTATCCAATAGTTGGATTCCAAG
1 TACATAGTTTGGCCATCGCCATCATATGCCTTTCATCCAATACTTGGATTCCAAG
41488 TACATAGTTTGGCCATCGCCATCATATGCCTTTCATCCAATACTTGGATTCCAAG
1 TACATAGTTTGGCCATCGCCATCATATGCCTTTCATCCAATACTTGGATTCCAAG
41543 TACAT
1 TACAT
41548 CCCAAGCATC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (55 bp):
TACATAGTTTGGCCATCGCCATCATATGCCTTTCATCCAATACTTGGATTCCAAG
Found at i:49729 original size:117 final size:116
Alignment explanation
Indices: 49496--49826 Score: 394
Period size: 117 Copynumber: 2.8 Consensus size: 116
49486 ATTTAACTTT
* ** * * *
49496 TTATGTGATGGAATCTAGCCAAGGTTGAACAAATTATTCTCATTAGGAACTTCTTATCCCTCATC
1 TTATGTGATGG-AT-GAGCCAAGGTCAAACAAGTTCTTCTCATTAGGAACTTCTTCTCCCTCATC
* *
49561 AGATGAGTTCTTCTCATTATGAACCCTTCCACCGGAAAGTACTGAGCCAACTCC
64 AGACGAGTTCTTCTCATTATGAACCATTCCACCGGAAAGTA-TGAGCCAACTCC
* * *
49615 TTATGTGATGGATGAGTCAATGTCAAACAAGTTCTTCTCATTAGGAACTTCTTCTCCCTCATCGT
1 TTATGTGATGGATGAGCCAAGGTCAAACAAGTTCTTCTCATTAGGAACTTCTTCTCCCTCATC-A
* * * ** *
49680 GCCGAGTTCTTCTCATTATGAACTATTTCATTGGAAATGT-TGATCCAACTCC
65 GACGAGTTCTTCTCATTATGAACCATTCCACCGGAAA-GTATGAGCCAACTCC
* **
49732 TTATGTGATGGATGAGCCAAGGTCGAACAAGCACTTCTCATTAGGAACTTCTTCTCCCTCATCAG
1 TTATGTGATGGATGAGCCAAGGTCAAACAAGTTCTTCTCATTAGGAACTTCTTCTCCCTCATCAG
* * * *
49797 ATGAGTTTTTCTCATTATCAACCCTTCCAC
66 ACGAGTTCTTCTCATTATGAACCATTCCAC
49827 TAGAATGTTG
Statistics
Matches: 179, Mismatches: 31, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
116 23 0.13
117 111 0.62
118 32 0.18
119 13 0.07
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (116 bp):
TTATGTGATGGATGAGCCAAGGTCAAACAAGTTCTTCTCATTAGGAACTTCTTCTCCCTCATCAG
ACGAGTTCTTCTCATTATGAACCATTCCACCGGAAAGTATGAGCCAACTCC
Found at i:57784 original size:52 final size:52
Alignment explanation
Indices: 57706--57933 Score: 354
Period size: 52 Copynumber: 4.4 Consensus size: 52
57696 CTTAGTCAGA
* * * *
57706 AAGTATACATATATATATATATATCTTGTTAGTTGTTTCTATCTTTGTCGTC
1 AAGTATACGTGTACATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTC
57758 AAGTATACGTGTACATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTC
1 AAGTATACGTGTACATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTC
57810 AAGTATACGTGTACATATATATATATCTTGTTAGTTGTTTCTAAC-TT-T-GTC
1 AAGTATACGTGTAC--ATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTC
*
57861 AAGTATATGTGTACATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTC
1 AAGTATACGTGTACATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTC
* *
57913 AAGTATATGTGTATATATATA
1 AAGTATACGTGTACATATATA
57934 AACTTCCTTG
Statistics
Matches: 165, Mismatches: 6, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
49 29 0.18
50 2 0.01
51 17 0.10
52 86 0.52
53 2 0.01
54 29 0.18
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (52 bp):
AAGTATACGTGTACATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTC
Found at i:57894 original size:103 final size:106
Alignment explanation
Indices: 57718--57933 Score: 375
Period size: 103 Copynumber: 2.1 Consensus size: 106
57708 GTATACATAT
*
57718 ATATATATATATCTTGTTAGTTGTTTCTATCTTTGTCGTCAAGTATACGTGTACATATATATATC
1 ATATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTCAAGTATACGTGTACATATATATATC
57783 TTGTTAGTTGTTTCTAACTTTGTCGTCAAGTATACGTGTAC
66 TTGTTAGTTGTTTCTAACTTTGTCGTCAAGTATACGTGTAC
*
57824 ATATATATATATCTTGTTAGTTGTTTCTAAC-TT-T-GTCAAGTATATGTGTACATATATATATC
1 ATATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTCAAGTATACGTGTACATATATATATC
* *
57886 TTGTTAGTTGTTTCTAACTTTGTCGTCAAGTATATGTGTAT
66 TTGTTAGTTGTTTCTAACTTTGTCGTCAAGTATACGTGTAC
57927 ATATATA
1 ATATATA
57934 AACTTCCTTG
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
103 73 0.69
104 1 0.01
105 2 0.02
106 30 0.28
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.48
Consensus pattern (106 bp):
ATATATATATATCTTGTTAGTTGTTTCTAACTTTGTCGTCAAGTATACGTGTACATATATATATC
TTGTTAGTTGTTTCTAACTTTGTCGTCAAGTATACGTGTAC
Found at i:60672 original size:146 final size:145
Alignment explanation
Indices: 60422--60792 Score: 566
Period size: 146 Copynumber: 2.6 Consensus size: 145
60412 TCTGCCGTCA
* * * * *
60422 TCCACCGTCCGATCGTCCTGATTTTTCAATAGGTTGTTCGTGTTGGCATCACACAACTTTTCACC
1 TCCACCGTCCGATCGTCCTGATTTTTCAATATGTTGTTCGTGATGGC-TTACGCAACTTTTGACC
* * * *
60487 GTTTGGAATACTGATCGAAGATTCCGATCACCGGCAAGAGGCTAAAAACTGTCCGGATTTGTTTT
65 GTTCGGAATATTGATCGAAGATTCCGATCACCGGAAAGAGGCTAAAAACCGTCCGGATTTGTTTT
*
60552 CTCTGATCCGTCACCG
130 CTCCGATCCGTCACCG
*
60568 TCCACCGTCCGATCGTCCTGATTTTTCAATATGTTGTTCGTGATGGTCTTACGCAACTTTTGACT
1 TCCACCGTCCGATCGTCCTGATTTTTCAATATGTTGTTCGTGATGG-CTTACGCAACTTTTGACC
*
60633 GTTCGGAATGTTGATCGAAGATTCCGATCACCGGAAAGAGGCTAAAAACCGTCCGGATTTGTTTT
65 GTTCGGAATATTGATCGAAGATTCCGATCACCGGAAAGAGGCTAAAAACCGTCCGGATTTGTTTT
60698 CTCCGATCCGTCACCG
130 CTCCGATCCGTCACCG
* *
60714 TCCATCGTCCGATCGTCCTGA-TTTTCACTATGTTGTTCGTGATGGCCTTACGCAAC-TTTGACC
1 TCCACCGTCCGATCGTCCTGATTTTTCAATATGTTGTTCGTGATGG-CTTACGCAACTTTTGACC
*
60777 GTTCAGAATATTGATC
65 GTTCGGAATATTGATC
60793 AGAGATCCCA
Statistics
Matches: 206, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
144 20 0.10
145 33 0.16
146 152 0.74
147 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (145 bp):
TCCACCGTCCGATCGTCCTGATTTTTCAATATGTTGTTCGTGATGGCTTACGCAACTTTTGACCG
TTCGGAATATTGATCGAAGATTCCGATCACCGGAAAGAGGCTAAAAACCGTCCGGATTTGTTTTC
TCCGATCCGTCACCG
Found at i:60999 original size:12 final size:12
Alignment explanation
Indices: 60984--61041 Score: 89
Period size: 12 Copynumber: 4.8 Consensus size: 12
60974 GTGGAATAAT
*
60984 AAAACATGGAAG
1 AAAACATGGAAC
*
60996 AAAACATAGAAC
1 AAAACATGGAAC
61008 AAAACATGGAAC
1 AAAACATGGAAC
*
61020 AAAACATGGAAT
1 AAAACATGGAAC
61032 AAAACATGGA
1 AAAACATGGA
61042 GTGGTGGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.60, C:0.12, G:0.17, T:0.10
Consensus pattern (12 bp):
AAAACATGGAAC
Found at i:61090 original size:3 final size:3
Alignment explanation
Indices: 61082--61136 Score: 92
Period size: 3 Copynumber: 17.7 Consensus size: 3
61072 AGTTCTTGGG
61082 TAA TAA TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
61128 TTAA TAA TA
1 -TAA TAA TA
61137 TTTTTTTTCG
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
3 44 0.88
4 6 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:61116 original size:25 final size:25
Alignment explanation
Indices: 61082--61136 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
61072 AGTTCTTGGG
61082 TAATAATAATAATAATAATAAATAA
1 TAATAATAATAATAATAATAAATAA
*
61107 TAATAATAATAATAATAATAATTAA
1 TAATAATAATAATAATAATAAATAA
61132 TAATA
1 TAATA
61137 TTTTTTTTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
TAATAATAATAATAATAATAAATAA
Found at i:61395 original size:55 final size:55
Alignment explanation
Indices: 61336--61586 Score: 310
Period size: 55 Copynumber: 4.6 Consensus size: 55
61326 AAAACATGTA
* **
61336 TGCTCCATA-TTCTTTCAGAGAGTATGGGACTCAAACAATCTTCAACAATCTTGTC
1 TGCTCCCTATTTC-TTCAGAGAGTATAAGACTCAAACAATCTTCAACAATCTTGTC
* * *
61391 TGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCTTGTA
1 TGCTCCCTATTTCTTCAGAGAGTATAAGACTCAAACAATCTTCAACAATCTTGTC
* * *
61446 TGCTCCCTATTTCTTCAGAGAGTATAAAACTCGAACAATCTTCAATAATCTTGTC
1 TGCTCCCTATTTCTTCAGAGAGTATAAGACTCAAACAATCTTCAACAATCTTGTC
* * * * ** *
61501 TGCTCTCTA-TTCGTTCAGATAGTATAAGACTCAAACATTCTTCAA-TATCGCGTT
1 TGCTCCCTATTTC-TTCAGAGAGTATAAGACTCAAACAATCTTCAACAATCTTGTC
*
61555 TGCTCCCTATTTCTTCAGAGAATATAAGACTC
1 TGCTCCCTATTTCTTCAGAGAGTATAAGACTC
61587 GAGCAAGTAA
Statistics
Matches: 173, Mismatches: 20, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
54 33 0.19
55 137 0.79
56 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (55 bp):
TGCTCCCTATTTCTTCAGAGAGTATAAGACTCAAACAATCTTCAACAATCTTGTC
Found at i:61498 original size:110 final size:109
Alignment explanation
Indices: 61305--61588 Score: 338
Period size: 110 Copynumber: 2.6 Consensus size: 109
61295 CCGGGGTAAG
* * * * ** *
61305 TGAGACTTGAAAAATCTTCGAAAAACATGTATGCTCCATA-TTCTTTCAGAGAGTATGGGACTCA
1 TGAGACTCGAACAATCTTC-AAAATCATGTATGCTCCCTATTTC-TTCAGAGAGTATAAGACTCG
61369 AACAATCTTCAACAATCTTGTCTGCTCCCTATTTC-TTCAGAGAGTA
64 AACAATCTTCAACAATCTTGTCTGCTCCCTA-TTCGTTCAGAGAGTA
* *
61415 TGAGACTCGAACAATCTTCAACAATCTTGTATGCTCCCTATTTCTTCAGAGAGTATAAAACTCGA
1 TGAGACTCGAACAATCTTCAA-AATCATGTATGCTCCCTATTTCTTCAGAGAGTATAAGACTCGA
* * *
61480 ACAATCTTCAATAATCTTGTCTGCTCTCTATTCGTTCAGATAGTA
65 ACAATCTTCAACAATCTTGTCTGCTCCCTATTCGTTCAGAGAGTA
* * * * ** * *
61525 TAAGACTCAAACATTCTTCAATATCGCGTTTGCTCCCTATTTCTTCAGAGAATATAAGACTCGA
1 TGAGACTCGAACAATCTTCAAAATCATGTATGCTCCCTATTTCTTCAGAGAGTATAAGACTCGA
61589 GCAAGTAAGC
Statistics
Matches: 150, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
109 42 0.28
110 105 0.70
111 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (109 bp):
TGAGACTCGAACAATCTTCAAAATCATGTATGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAA
CAATCTTCAACAATCTTGTCTGCTCCCTATTCGTTCAGAGAGTA
Found at i:61690 original size:54 final size:54
Alignment explanation
Indices: 61617--63139 Score: 1569
Period size: 54 Copynumber: 29.0 Consensus size: 54
61607 ATCTTCTATT
*** * * * *
61617 AACGGGTTCGCTTATTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* * * *
61671 TACGGGTTCGCTCCCTCTTTCT-TCAGGGAGTATAAAACTC-AGATATC-TCCTCA
1 AACGGGTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGA-ACATCTTCTTCA
* * * * * *
61724 AACGGGTTCACTCCTTCTTTCT-TCAAGGAGTATGGAACTCGGATATCTTCTTCA
1 AACGGGTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGAACATCTTCTTCA
61778 AACGGGTTCGCTCCCTC-TTCTCTAGGGAGTATAGAACTCGAACA---TCTTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* *
61828 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATCTTCTTCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* * * * * **
61882 TATGGGTTCACTCCCTCTTTCTCTAGGGAGTATGGAACTCGAAAATCTTCTGAA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
** * * * * **
61936 AACGGGTTCGCTCATTCTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTGAA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
** * * ** *
61990 AACGGGTTCGCTCATTCTTTCTTTAAGGAGTACGGAACTC-AA-A-CATCTTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
*
62041 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTAT-GAAACTCGAACATCTTCTTCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAG-AACTCGAACATCTTCTTCA
* ** * * * * * *
62095 TACATGTTCGGTCCTTCTTTCTCTAAGGAGTATAAAACTCGAACAT-TTTTTCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* * * **
62148 TACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAAAATCTTCTGAA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
*
62202 AACGGGTTCGCTCCCTCTTTCTTTA-GGAGTATAGAACTCGAACATC-TCTTC-
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* * *
62253 -A-TGGTTCACTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACA---TCTTC-
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
*
62301 -ACGGGTTCGCTCCCTGTTTCTCTAGGGAGTATAGAACTCGAACATC--C--CA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* *
62350 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAGCA---TCTTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* *
62401 AACGGGTTCGCTCCCTCTTTATTTAGGGAGTATAGAACTC-AGACAATC-TC--CA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGA-AC-ATCTTCTTCA
* *
62453 AACAGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTC-AGACA-ATT-TTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGA-ACATCTTCTTCA
* * *
62505 AACGGGTTCGCTCCCTCTTTCTCTA-GGAGTATAGAACTCGGACATTTTATTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* * * * *
62558 AACTGATTCGCTCCCTCTTTCTCTAGAGAGTATATAACTCGAACA-ATT-TTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* * * **
62610 AACGGGTTCGCTCACTCTTTCTCTAGGGAGTATAGAACTCGAAAATCTTATGAA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* * *
62664 AACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTTCTTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* **
62718 AACGGGTTCG-TTCCTCTTTCT-TCAGGGAGTATAGAACTC-AA-A-AATCTTCA
1 AACGGGTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGAACATCTTCTTCA
* * *
62768 AATGGGTTCGCTCCCTCTTTCT-TCAGGGAGTATAGAACTCAAACATCTTCTGT-G
1 AACGGGTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGAACATCTTCT-TCA
* * *
62822 AACGGGTTCGCTTCCTCTTTCTTTCAGGAAGTATAGAACTC-AGACAATC-TC--CA
1 AACGGGTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGA-AC-ATCTTCTTCA
* *
62875 AACAGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTC-AGACA-ATT-TTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGA-ACATCTTCTTCA
*
62927 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTC-AGACATTTTCTTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGA-ACATCTTCTTCA
* * *
62981 AACTGATTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACA-ATT-TTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
* *
63033 AACGGGTTCGCTCACTCTTTCTCTAGGGAGTATAGAACTC-AGACATTTTCTTCA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGA-ACATCTTCTTCA
* *
63087 AACTGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAATAATCTTCTT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAA-CATCTTCTT
63140 TTGCTTCACT
Statistics
Matches: 1257, Mismatches: 154, Indels: 115
0.82 0.10 0.08
Matches are distributed among these distances:
48 7 0.01
49 58 0.05
50 101 0.08
51 155 0.12
52 235 0.19
53 215 0.17
54 452 0.36
55 31 0.02
56 3 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (54 bp):
AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCA
Found at i:61932 original size:158 final size:159
Alignment explanation
Indices: 61617--63139 Score: 1596
Period size: 158 Copynumber: 9.6 Consensus size: 159
61607 ATCTTCTATT
*** * * * **
61617 AACGGGTTCGCTTATTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCTTACGGGTTCGC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACA---TCTTCAAACGGGTTCGC
* * * * *
61682 TCCCTCTTTCT-TCAGGGAGTATAAAACTC-AGATATC-TCCTCAAACGGGTTCACTCCTTCTTT
63 TCCCTCTTTCTCT-AGGGAGTATAGAACTCGA-ACATCTTCTTCAAACGGGTTCGCTCCCTCTTT
* * *
61744 CT-TCAAGGAGTATGGAACTCGGATATCTTCTTCA
126 CTCT-AGGGAGTATGGAACTCGAACATCTTCTTCA
61778 AACGGGTTCGCTCCCTC-TTCTCTAGGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCC
* ** * *
61842 CTCTTTCTCTAGGGAGTATGGAACTCGAACATCTTCTTCTTATGGGTTCACTCCCTCTTTCTCTA
66 CTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTA
* **
61907 GGGAGTATGGAACTCGAAAATCTTCTGAA
131 GGGAGTATGGAACTCGAACATCTTCTTCA
** * * * *
61936 AACGGGTTCGCTCATTCTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTGAAAACGGGTTCGC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTC---AAACGGGTTCGC
** * * ** *
62001 TCATTCTTTCTTTAAGGAGTACGGAACTC-AA-A-CATCTTCAAACGGGTTCGCTCCCTCTTTCT
63 TCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCT
* *
62063 CTAGGGAGTATGAAACTCGAACATCTTCTTCT
128 CTAGGGAGTATGGAACTCGAACATCTTCTTCA
* ** * * * * * **
62095 TACATGTTCGGTCCTTCTTTCTCTAAGGAGTATAAAACTCGAACATTTTTTCTTACGGGTTCGCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACA--TCTTCAAACGGGTTCGCT
* * ** *
62160 CCCTCTTTCTCTAGGGAGTATGGAACTCGAAAATCTTCTGAAAACGGGTTCGCTCCCTCTTTCTT
64 CCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTC
*
62225 TA-GGAGTATAGAACTCGAACATC-TCTTC-
129 TAGGGAGTATGGAACTCGAACATCTTCTTCA
* * *
62253 -A-TGGTTCACTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATCTTC--ACGGGTTCGCTCC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCC
*
62314 CTGTTTCTCTAGGGAGTATAGAACTCGAACATC--C--CAAACGGGTTCGCTCCCTCTTTCTCTA
66 CTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTA
*
62375 GGGAGTATGGAACTCGAGCA---TCTTCA
131 GGGAGTATGGAACTCGAACATCTTCTTCA
* * * *
62401 AACGGGTTCGCTCCCTCTTTATTTAGGGAGTATAGAACTC-AGACAATCTCCAAACAGGTTCGCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGA-AC-ATCTTCAAACGGGTTCGCT
*
62465 CCCTCTTTCTCTAGGGAGTATAGAACTC-AGACA-ATT-TTCAAACGGGTTCGCTCCCTCTTTCT
64 CCCTCTTTCTCTAGGGAGTATAGAACTCGA-ACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCT
* * * *
62527 CTA-GGAGTATAGAACTCGGACATTTTATTCA
128 CTAGGGAGTATGGAACTCGAACATCTTCTTCA
* * * * *
62558 AACTGATTCGCTCCCTCTTTCTCTAGAGAGTATATAACTCGAACAATTTTCAAACGGGTTCGCTC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAAC-ATCTTCAAACGGGTTCGCTC
* * * ** * *
62623 ACTCTTTCTCTAGGGAGTATAGAACTCGAAAATCTTATGAAAACGGGTTCGCTCCTTCTTTCTTT
65 CCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCT
62688 AGGGAGTATGGAACTCGAACATCTTCTTCA
130 AGGGAGTATGGAACTCGAACATCTTCTTCA
* * * *
62718 AACGGGTTCG-TTCCTCTTTCT-TCAGGGAGTATAGAACTCAAAAATCTTCAAATGGGTTCGCTC
1 AACGGGTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTC
* * *
62781 CCTCTTTCT-TCAGGGAGTATAGAACTCAAACATCTTCTGT-GAACGGGTTCGCTTCCTCTTTCT
65 CCTCTTTCTCT-AGGGAGTATAGAACTCGAACATCTTCT-TCAAACGGGTTCGCTCCCTCTTTCT
* * *
62844 TTCAGGAAGTATAGAACTC-AGACAATC-TC--CA
128 CT-AGGGAGTATGGAACTCGA-AC-ATCTTCTTCA
* *
62875 AACAGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTC-AGACAATTTTCAAACGGGTTCGCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGA-AC-ATCTTCAAACGGGTTCGCT
* * *
62939 CCCTCTTTCTCTAGGGAGTATAGAACTC-AGACATTTTCTTCAAACTGATTCGCTCCCTCTTTCT
64 CCCTCTTTCTCTAGGGAGTATAGAACTCGA-ACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCT
* *
63003 CTAGGGAGTATAGAACTCGAACA-ATT-TTCA
128 CTAGGGAGTATGGAACTCGAACATCTTCTTCA
* *
63033 AACGGGTTCGCTCACTCTTTCTCTAGGGAGTATAGAACTC-AGACATTTTCTTCAAACTGGTTCG
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGA-ACA---TCTTCAAACGGGTTCG
*
63097 CTCCCTCTTTCTCTAGGGAGTATAGAACTCGAATAATCTTCTT
62 CTCCCTCTTTCTCTAGGGAGTATAGAACTCGAA-CATCTTCTT
63140 TTGCTTCACT
Statistics
Matches: 1154, Mismatches: 152, Indels: 112
0.81 0.11 0.08
Matches are distributed among these distances:
147 5 0.00
148 25 0.02
149 19 0.02
150 35 0.03
151 5 0.00
152 44 0.04
153 40 0.03
154 20 0.02
155 27 0.02
156 34 0.03
157 148 0.13
158 267 0.23
159 266 0.23
160 126 0.11
161 57 0.05
162 36 0.03
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (159 bp):
AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCTCC
CTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTA
GGGAGTATGGAACTCGAACATCTTCTTCA
Found at i:62060 original size:159 final size:157
Alignment explanation
Indices: 61617--63126 Score: 1501
Period size: 159 Copynumber: 9.6 Consensus size: 157
61607 ATCTTCTATT
*** * * * * **
61617 AACGGGTTCGCTTATTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCTTACGGGTTCGC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAAAATCTTC-TCAAACGGGTTCGC
* * * * *
61682 TCCCTCTTTCT-TCAGGGAGTATAAAACTCAGATATCTCCTCAAACGGGTTCACTCCTTCTTTCT
65 TCCCTCTTTCTCT-AGGGAGTATAGAACTCAAACATCT--TCAAACGGGTTCGCTCCCTCTTTCT
* * *
61746 -TCAAGGAGTATGGAACTCGGATATCTTCTTCA
127 CT-AGGGAGTATGGAACTCGAACATCTTC-TCA
*
61778 AACGGGTTCGCTCCCTC-TTCTCTAGGGAGTATAGAACTCGAACATC-T-TCAAACGGGTTCGCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAAAATCTTCTCAAACGGGTTCGCT
* * ** * *
61840 CCCTCTTTCTCTAGGGAGTATGGAACTCGAACATCTTCTTCTTATGGGTTCACTCCCTCTTTCTC
66 CCCTCTTTCTCTAGGGAGTATAGAACTC-AA-A-CATCTTCAAACGGGTTCGCTCCCTCTTTCTC
* *
61905 TAGGGAGTATGGAACTCGAAAATCTTCTGAA
128 TAGGGAGTATGGAACTCGAACATCTTCT-CA
** * * * *
61936 AACGGGTTCGCTCATTCTTTCTTTAAGGAGTATGGAACTCGAAAATCTTCTGAAAACGGGTTCGC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAAAATCTTCT-CAAACGGGTTCGC
** * * **
62001 TCATTCTTTCTTTAAGGAGTACGGAACTCAAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTA
65 TCCCTCTTTCTCTAGGGAGTATAGAACTCAAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTA
* *
62066 GGGAGTATGAAACTCGAACATCTTCTTCT
130 GGGAGTATGGAACTCGAACATCTTC-TCA
* ** * * * * * * * **
62095 TACATGTTCGGTCCTTCTTTCTCTAAGGAGTATAAAACTCGAACATTTTTTCTTACGGGTTCGCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAAAATCTTCTCAAACGGGTTCGCT
*
62160 CCCTCTTTCTCTAGGGAGTATGGAACTCGAAA-ATCTTCTGAAAACGGGTTCGCTCCCTCTTTCT
66 CCCTCTTTCTCTAGGGAGTATAGAACTC-AAACATCTTC---AAACGGGTTCGCTCCCTCTTTCT
* *
62224 TTA-GGAGTATAGAACTCGAACATC-TCTTC-
127 CTAGGGAGTATGGAACTCGAACATCTTC-TCA
* * * *
62253 -A-TGGTTCACTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATC-T-TC--ACGGGTTCGCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAAAATCTTCTCAAACGGGTTCGCT
* * *
62312 CCCTGTTTCTCTAGGGAGTATAGAACTCGAACATC-CCAAACGGGTTCGCTCCCTCTTTCTCTAG
66 CCCTCTTTCTCTAGGGAGTATAGAACTCAAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAG
*
62376 GGAGTATGGAACTCGAGCATC-T-TCA
131 GGAGTATGGAACTCGAACATCTTCTCA
* * * *
62401 AACGGGTTCGCTCCCTCTTTATTTAGGGAGTATAGAACTCAGACAATC-TC-CAAACAGGTTCGC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTC-GAAAATCTTCTCAAACGGGTTCGC
* *
62464 TCCCTCTTTCTCTAGGGAGTATAGAACTCAGACAATTTTCAAACGGGTTCGCTCCCTCTTTCTCT
65 TCCCTCTTTCTCTAGGGAGTATAGAACTCAAAC-ATCTTCAAACGGGTTCGCTCCCTCTTTCTCT
* * * *
62529 A-GGAGTATAGAACTCGGACATTTTATTCA
129 AGGGAGTATGGAACTCGAACATCTT-CTCA
* * * *
62558 AACTGATTCGCTCCCTCTTTCTCTAGAGAGTATATAACTCGAACAAT-TT-TCAAACGGGTTCGC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAA-AATCTTCTCAAACGGGTTCGC
* * *
62621 TCACTCTTTCTCTAGGGAGTATAGAACTCGAAA-ATCTTATGAAAACGGGTTCGCTCCTTCTTTC
65 TCCCTCTTTCTCTAGGGAGTATAGAACTC-AAACATC-T-T-CAAACGGGTTCGCTCCCTCTTTC
*
62685 TTTAGGGAGTATGGAACTCGAACATCTTCTTCA
126 TCTAGGGAGTATGGAACTCGAACATCTTC-TCA
* * *
62718 AACGGGTTCG-TTCCTCTTTCT-TCAGGGAGTATAGAACTCAAAAATC-T-TCAAATGGGTTCGC
1 AACGGGTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGAAAATCTTCTCAAACGGGTTCGC
* *
62779 TCCCTCTTTCT-TCAGGGAGTATAGAACTCAAACATCTTCTGTGAACGGGTTCGCTTCCTCTTTC
65 TCCCTCTTTCTCT-AGGGAGTATAGAACTCAAACATCTTC---AAACGGGTTCGCTCCCTCTTTC
* * *
62843 TTTCAGGAAGTATAGAACTC-AGACAATC-TC-CA
126 TCT-AGGGAGTATGGAACTCGA-AC-ATCTTCTCA
* *
62875 AACAGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCAGACAAT-TT-TCAAACGGGTTCGC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTC-GAAAATCTTCTCAAACGGGTTCGC
* * *
62938 TCCCTCTTTCTCTAGGGAGTATAGAACTCAGACATTTTCTTCAAACTGATTCGCTCCCTCTTTCT
65 TCCCTCTTTCTCTAGGGAGTATAGAACTCAAACA---TCTTCAAACGGGTTCGCTCCCTCTTTCT
*
63003 CTAGGGAGTATAGAACTCGAACAAT-TT-TCA
127 CTAGGGAGTATGGAACTCGAAC-ATCTTCTCA
* * * *
63033 AACGGGTTCGCTCACTCTTTCTCTAGGGAGTATAGAACTC-AGACATTTTCTTCAAACTGGTTCG
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGA-AAATCTTC-TCAAACGGGTTCG
63097 CTCCCTCTTTCTCTAGGGAGTATAGAACTC
64 CTCCCTCTTTCTCTAGGGAGTATAGAACTC
63127 GAATAATCTT
Statistics
Matches: 1140, Mismatches: 146, Indels: 127
0.81 0.10 0.09
Matches are distributed among these distances:
147 2 0.00
148 25 0.02
149 21 0.02
150 32 0.03
151 10 0.01
152 40 0.04
153 39 0.03
154 21 0.02
155 29 0.03
156 41 0.04
157 139 0.12
158 264 0.23
159 266 0.23
160 128 0.11
161 42 0.04
162 41 0.04
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (157 bp):
AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAAAATCTTCTCAAACGGGTTCGCT
CCCTCTTTCTCTAGGGAGTATAGAACTCAAACATCTTCAAACGGGTTCGCTCCCTCTTTCTCTAG
GGAGTATGGAACTCGAACATCTTCTCA
Found at i:63058 original size:106 final size:105
Alignment explanation
Indices: 61617--63129 Score: 1498
Period size: 106 Copynumber: 14.4 Consensus size: 105
61607 ATCTTCTATT
*** * * * **
61617 AACGGGTTCGCTTATTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTCTTCTTACGGGTTCGC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACA-ATT-TTCAAACGGGTTCGC
* * * *
61682 TCCCTCTTTCT-TCAGGGAGTATAAAACTCAGATATCTCCTCA
64 TCCCTCTTTCTCT-AGGGAGTATAGAACTCAGACATTTCTTCA
* * * * * *
61724 AACGGGTTCACTCCTTCTTTCT-TCAAGGAGTATGGAACTCGGATATCTTCTTCAAACGGGTTCG
1 AACGGGTTCGCTCCCTCTTTCTCT-AGGGAGTATGGAACTCGAACA-ATT-TTCAAACGGGTTCG
61788 CTCCCTC-TTCTCTAGGGAGTATAGAACTC-GAACA--TCTTCA
63 CTCCCTCTTTCTCTAGGGAGTATAGAACTCAG-ACATTTCTTCA
* ** * *
61828 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATCTTCTTCTTATGGGTTCAC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACA-ATT-TTCAAACGGGTTCGC
* * **
61893 TCCCTCTTTCTCTAGGGAGTATGGAACTC-GAAAATCTTCTGAA
64 TCCCTCTTTCTCTAGGGAGTATAGAACTCAG-ACAT-TTCTTCA
** * * *
61936 AACGGGTTCGCTCATTCTTTCTTTAAGGAGTATGGAACTCGAA-AATCTTCTGAAAACGGGTTCG
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAAT-TT-T-CAAACGGGTTCG
** * * ** *
62000 CTCATTCTTTCTTTAAGGAGTACGGAACTCAAACA--TCTTCA
63 CTCCCTCTTTCTCTAGGGAGTATAGAACTCAGACATTTCTTCA
* * ** ** *
62041 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGAAACTCGAACATCTTCTTCTTACATGTTCGG
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACA-ATT-TTCAAACGGGTTCGC
* * * * *
62106 TCCTTCTTTCTCTAAGGAGTATAAAACTC-GAACATTTTTTCT
64 TCCCTCTTTCTCTAGGGAGTATAGAACTCAG-ACATTTCTTCA
* *
62148 TACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAA-AATCTTCTGAAAACGGGTTCG
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAAT-TT-T-CAAACGGGTTCG
* *
62212 CTCCCTCTTTCTTTA-GGAGTATAGAACTC-GAACATCTCTTC-
63 CTCCCTCTTTCTCTAGGGAGTATAGAACTCAG-ACATTTCTTCA
* * *
62253 -A-TGGTTCACTCCCTCTTTCTCTAGGGAGTATGGAACTCGAAC-ATCTTC--ACGGGTTCGCTC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATTTTCAAACGGGTTCGCTC
* *
62313 CCTGTTTCTCTAGGGAGTATAGAACTC-GAACA--TC-CCA
66 CCTCTTTCTCTAGGGAGTATAGAACTCAG-ACATTTCTTCA
* *
62350 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAGC-ATCTTCAAACGGGTTCGCTC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATTTTCAAACGGGTTCGCTC
* * * *
62414 CCTCTTTATTTAGGGAGTATAGAACTCAGACA-ATCTCCA
66 CCTCTTTCTCTAGGGAGTATAGAACTCAGACATTTCTTCA
* *
62453 AACAGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTC-AGACAATTTTCAAACGGGTTCGCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGA-ACAATTTTCAAACGGGTTCGCT
* *
62517 CCCTCTTTCTCTA-GGAGTATAGAACTCGGACATTTTATTCA
65 CCCTCTTTCTCTAGGGAGTATAGAACTCAGACA-TTTCTTCA
* * * **
62558 AACTGATTCGCTCCCTCTTTCTCTAGAGAGTATATAACTCGAACAATTTTCAAACGGGTTCGCTC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATTTTCAAACGGGTTCGCTC
* * * **
62623 ACTCTTTCTCTAGGGAGTATAGAACTC-GAAAATCTTATGAA
66 CCTCTTTCTCTAGGGAGTATAGAACTCAG-ACAT-TTCTTCA
* * *
62664 AACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTTCTTCAAACGGGTTCG-
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACA-ATT-TTCAAACGGGTTCGC
* **
62728 TTCCTCTTTCT-TCAGGGAGTATAGAACTCA-A-AAATCTTCA
64 TCCCTCTTTCTCT-AGGGAGTATAGAACTCAGACATTTCTTCA
* * * **
62768 AATGGGTTCGCTCCCTCTTTCT-TCAGGGAGTATAGAACTCAAAC-ATCTTCTGTGAACGGGTTC
1 AACGGGTTCGCTCCCTCTTTCTCT-AGGGAGTATGGAACTCGAACAAT-TT-T-CAAACGGGTTC
* * * * *
62831 GCTTCCTCTTTCTTTCAGGAAGTATAGAACTCAGACA-ATCTCCA
62 GCTCCCTCTTTCTCT-AGGGAGTATAGAACTCAGACATTTCTTCA
* *
62875 AACAGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTC-AGACAATTTTCAAACGGGTTCGCT
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGA-ACAATTTTCAAACGGGTTCGCT
62939 CCCTCTTTCTCTAGGGAGTATAGAACTCAGACATTTTCTTCA
65 CCCTCTTTCTCTAGGGAGTATAGAACTCAGACA-TTTCTTCA
* * *
62981 AACTGATTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACAATTTTCAAACGGGTTCGCTC
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATTTTCAAACGGGTTCGCTC
*
63046 ACTCTTTCTCTAGGGAGTATAGAACTCAGACATTTTCTTCA
66 CCTCTTTCTCTAGGGAGTATAGAACTCAGACA-TTTCTTCA
* *
63087 AACTGGTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAA
1 AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAA
63130 TAATCTTCTT
Statistics
Matches: 1205, Mismatches: 144, Indels: 115
0.82 0.10 0.08
Matches are distributed among these distances:
96 1 0.00
97 2 0.00
98 23 0.02
99 63 0.05
101 40 0.03
102 7 0.01
103 103 0.09
104 166 0.14
105 215 0.18
106 283 0.23
107 207 0.17
108 95 0.08
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (105 bp):
AACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACAATTTTCAAACGGGTTCGCTC
CCTCTTTCTCTAGGGAGTATAGAACTCAGACATTTCTTCA
Found at i:63617 original size:36 final size:36
Alignment explanation
Indices: 63475--63693 Score: 203
Period size: 36 Copynumber: 6.1 Consensus size: 36
63465 ATCTGATGGT
* *
63475 GATGGTTTGCTCCAAC-ACTCTTCT-GAGAAGGCTTAA
1 GATGGTTTGCTTC-ACTACTCTT-TGGTGAAGGCTTAA
* * * * * **
63511 AATGGATTTCCTTCACGACTCTTTGATGAAGACACAA
1 GATGG-TTTGCTTCACTACTCTTTGGTGAAGGCTTAA
*
63548 GATGGTTTGCTTCACTATTCTTTGGTGAAGGCTTAA
1 GATGGTTTGCTTCACTACTCTTTGGTGAAGGCTTAA
* *
63584 GATGGTTTGCTTCACTACTCTTTAGTGACGGCTTAA
1 GATGGTTTGCTTCACTACTCTTTGGTGAAGGCTTAA
* * *
63620 GATGG-TTGCTTCACTATTATTT-GTGAAGGCTTTA
1 GATGGTTTGCTTCACTACTCTTTGGTGAAGGCTTAA
* * * *
63654 GATTGATCTGCTTCACTCCTCTTCGGTGAAGGCTTAA
1 GA-TGGTTTGCTTCACTACTCTTTGGTGAAGGCTTAA
63691 GAT
1 GAT
63694 TGACTTTGCT
Statistics
Matches: 147, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
34 12 0.08
35 17 0.12
36 82 0.56
37 36 0.24
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.37
Consensus pattern (36 bp):
GATGGTTTGCTTCACTACTCTTTGGTGAAGGCTTAA
Found at i:63670 original size:71 final size:72
Alignment explanation
Indices: 63546--63693 Score: 201
Period size: 71 Copynumber: 2.1 Consensus size: 72
63536 ATGAAGACAC
* * * *
63546 AAGATGGTTTGCTTCACTATTCTTTGGTGAAGGCTTAAGATGGTTTGCTTCACTACTCTTTAGTG
1 AAGATGGTTTGCTTCACTATTATTTGGTGAAGGCTTAAGATGATCTGCTTCACTACTCTTCAGTG
*
63611 ACGGCTT
66 AAGGCTT
* * *
63618 AAGATGG-TTGCTTCACTATTATTT-GTGAAGGCTTTAGATTGATCTGCTTCACTCCTCTTCGGT
1 AAGATGGTTTGCTTCACTATTATTTGGTGAAGGCTTAAGA-TGATCTGCTTCACTACTCTTCAGT
63681 GAAGGCTT
65 GAAGGCTT
63689 AAGAT
1 AAGAT
63694 TGACTTTGCT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
70 13 0.19
71 47 0.70
72 7 0.10
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.39
Consensus pattern (72 bp):
AAGATGGTTTGCTTCACTATTATTTGGTGAAGGCTTAAGATGATCTGCTTCACTACTCTTCAGTG
AAGGCTT
Done.