Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005594.1 Hibiscus syriacus cultivar Beakdansim tig00013014_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98198

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1113--1142
15
2.0
15
100
0
60
33
26
6
33
1.83
1136--1165
10
3.0
10
95
0
51
23
20
10
46
1.80
3696--3798
52
2.0
53
92
1
172
46
12
18
22
1.82
9657--9697
16
2.6
16
92
0
64
7
65
12
14
1.45
12987--13077
3
30.0
3
89
6
139
35
2
0
62
1.07
14353--14397
22
2.1
22
88
12
67
28
0
4
66
1.11
14566--14819
129
2.0
129
96
0
463
34
7
8
50
1.60
14873--14926
23
2.3
23
80
3
54
50
1
1
46
1.23
14889--14935
2
25.0
2
79
12
55
48
0
0
51
1.00
23644--23805
54
3.0
53
84
3
198
36
14
22
27
1.92
24176--24255
22
3.6
22
89
0
115
38
11
13
36
1.81
25131--25227
45
2.2
45
88
0
140
30
21
17
29
1.96
24912--25292
119
3.2
119
88
3
608
28
21
19
29
1.98
25272--25314
22
2.0
22
90
0
68
39
18
20
20
1.93
25197--25399
96
2.1
96
92
3
336
31
19
19
30
1.96
25293--25537
118
2.1
118
95
0
436
30
21
20
28
1.98
25681--25755
3
25.0
3
84
8
73
37
1
1
60
1.14
25679--25754
16
5.1
14
69
15
55
35
1
1
61
1.12
25679--25710
16
2.0
16
100
0
64
25
0
0
75
0.81
25702--25756
22
2.5
22
81
0
65
43
1
1
52
1.22
25681--25768
44
2.0
44
86
8
126
43
2
1
53
1.20
27231--27291
23
2.7
23
82
10
88
29
27
22
19
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27402--27437
18
2.0
18
100
0
72
33
33
22
11
1.89
27298--27540
121
2.0
121
95
0
432
36
25
14
24
1.93
27328--27523
62
3.2
63
65
23
155
37
23
14
24
1.92
27420--27645
103
2.2
103
96
0
416
35
23
14
26
1.93
28925--28968
21
2.1
21
86
0
61
15
27
27
29
1.96
32716--32776
23
2.7
23
89
0
95
26
27
26
19
1.99
33008--33043
18
2.0
18
100
0
72
33
33
22
11
1.89
32783--33146
121
3.0
121
94
0
647
36
24
13
25
1.92
34428--34471
21
2.1
21
86
0
61
15
27
27
29
1.96
35779--35823
22
2.1
22
88
12
67
28
0
4
66
1.11
35990--36239
122
2.0
125
92
3
425
35
6
9
48
1.61
41344--41398
3
18.7
3
85
10
78
65
0
0
34
0.93
51515--51758
122
2.0
122
97
0
461
39
11
18
30
1.85
55572--55756
21
8.9
21
84
7
243
29
24
22
23
1.99
56387--56425
6
6.7
6
97
2
71
0
17
51
30
1.46
56543--56740
21
9.5
21
79
10
201
24
22
22
30
1.99
56542--56740
41
4.8
42
86
6
221
25
22
22
30
1.99
56630--56699
20
3.5
20
74
18
81
27
21
15
35
1.94
56543--56740
62
3.2
62
77
11
174
24
22
22
30
1.99
60257--60316
21
2.9
20
77
15
61
13
25
36
25
1.92
60279--60316
20
1.9
20
88
0
58
13
26
36
23
1.91
64084--64123
21
1.9
21
85
10
55
35
10
2
52
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66828--66971
57
2.5
57
80
7
157
36
13
15
34
1.86
67140--67192
25
2.1
25
85
0
70
35
32
24
7
1.84
79291--79315
2
12.5
2
100
0
50
52
0
0
48
1.00
79263--79349
45
2.0
44
97
2
165
59
0
0
40
0.97
79254--79349
36
2.8
36
83
9
103
59
0
0
40
0.97
83435--83460
13
2.0
13
100
0
52
69
0
0
30
0.89
88430--88473
13
3.5
13
81
6
54
68
2
0
29
1.02
89007--89058
19
2.8
19
83
16
65
55
0
0
44
0.99
90920--90963
20
2.2
20
84
8
54
29
13
25
31
1.94
94431--94477
18
2.7
18
90
3
69
27
27
8
36
1.86

Tables:   1

The End!