Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005595.1 Hibiscus syriacus cultivar Beakdansim tig00013018_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146505

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1224--1402
63
2.8
63
90
2
270
25
18
14
40
1.89
5864--5983
32
3.8
31
90
3
168
30
15
21
31
1.95
5863--5983
64
1.9
64
89
0
188
31
15
21
31
1.95
6508--6741
84
2.8
83
83
5
263
34
25
17
23
1.96
7039--7780
182
4.0
182
85
4
1027
31
29
15
22
1.95
6937--7776
375
2.2
365
87
5
1144
31
29
15
22
1.95
7408--7823
193
2.2
193
91
0
654
31
30
15
23
1.95
10316--10405
24
3.8
24
79
2
92
51
15
13
20
1.76
10316--10419
24
4.3
25
71
11
67
50
15
15
19
1.79
22459--22503
23
2.0
23
86
0
63
28
8
15
46
1.76
22469--22513
23
2.0
23
90
0
72
28
8
17
44
1.79
22779--22823
12
3.8
12
88
11
65
40
6
20
33
1.78
43263--43498
120
2.0
114
85
6
312
26
14
15
43
1.85
62773--62811
19
2.1
19
100
0
78
20
15
38
25
1.92
68462--68508
18
2.7
18
87
6
62
68
0
2
29
1.02
70889--70923
16
2.2
16
90
5
54
37
40
8
14
1.76
71941--72005
34
2.0
32
91
8
105
52
18
3
26
1.60
73953--74010
29
2.0
29
93
0
98
31
10
10
48
1.71
80908--80963
16
3.5
16
79
11
53
58
1
0
39
1.08
88060--88146
35
2.5
34
80
12
97
55
10
8
26
1.61
88711--88745
18
1.9
18
100
0
70
25
22
22
28
1.99
90255--90476
111
2.0
111
96
0
408
45
10
8
36
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92060--92140
31
2.7
30
75
3
83
41
2
19
35
1.65
92383--92438
27
2.1
27
86
3
78
25
7
14
53
1.66
92893--92925
12
2.8
12
90
4
50
30
18
21
30
1.97
95328--95420
42
2.2
42
98
0
177
12
21
36
29
1.91
109326--109438
36
3.1
36
79
9
115
24
23
18
32
1.97
109456--109569
57
2.0
57
82
0
138
28
28
10
31
1.90
116364--116456
5
17.6
5
78
14
82
21
5
1
72
1.11
116383--116423
16
2.7
15
88
3
55
19
4
0
75
0.98
116366--116456
32
2.8
31
82
11
87
20
5
1
72
1.11
116575--116612
2
19.5
2
94
5
69
50
0
0
50
1.00
118940--118983
19
2.4
18
80
3
52
31
15
15
36
1.90
122822--123169
185
1.9
185
95
1
626
46
9
2
41
1.50
123269--123328
30
2.0
30
86
3
84
38
6
21
33
1.80
142689--142879
103
1.9
103
89
2
303
27
24
17
30
1.97
142693--142879
51
3.7
50
87
4
243
27
24
17
30
1.97
142865--143053
54
3.5
54
96
0
342
18
25
19
36
1.94
143427--143549
36
3.4
37
83
8
153
26
19
21
32
1.97

Tables:   1

The End!