Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005596.1 Hibiscus syriacus cultivar Beakdansim tig00013020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110761

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1669--1712
23
1.9
23
90
0
70
15
20
47
15
1.82
7679--7708
15
2.0
15
93
0
51
23
16
26
33
1.96
9127--9153
2
13.5
2
100
0
54
48
0
51
0
1.00
9186--11548
597
4.0
597
99
0
4636
26
21
26
25
2.00
17422--17533
53
2.1
51
85
8
145
47
14
12
25
1.79
17752--17826
38
2.0
37
84
5
98
48
4
1
46
1.29
29859--29896
20
1.9
20
88
0
58
21
26
10
42
1.85
30453--30504
20
2.6
21
75
6
54
73
1
11
13
1.19
37432--37500
27
2.6
26
81
9
86
55
0
5
39
1.24
37433--37520
25
3.5
26
82
16
89
53
0
5
40
1.25
38584--38647
18
3.6
17
81
8
67
25
3
4
67
1.25
38662--38695
4
8.0
4
87
12
50
23
2
0
73
0.97
40656--40726
6
11.8
6
84
0
52
12
1
52
33
1.48
40665--40714
3
16.7
3
87
0
73
6
0
60
34
1.21
40665--40717
15
3.5
15
100
0
106
7
0
58
33
1.26
42025--42049
6
4.2
6
100
0
50
16
36
0
48
1.46
45945--45983
2
19.5
2
100
0
78
51
0
0
48
1.00
46597--46625
6
4.8
6
100
0
58
34
17
13
34
1.89
47195--47480
119
2.4
119
82
6
326
45
8
18
28
1.78
53109--53402
145
2.0
144
99
0
579
45
10
20
22
1.82
56294--56325
16
2.0
16
100
0
64
18
18
25
37
1.94
58760--58824
35
1.9
32
84
9
85
38
18
4
38
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58760--58824
32
1.9
34
82
14
82
38
18
4
38
1.72
71068--71142
33
2.3
33
88
0
105
24
26
34
14
1.94
71583--71700
60
2.0
60
88
3
175
31
13
17
37
1.89
76700--76739
18
2.2
18
90
0
62
57
5
7
30
1.48
76707--76741
18
1.9
18
100
0
70
51
5
8
34
1.56
77563--77595
3
11.0
3
93
0
57
63
0
3
33
1.10
78484--78521
13
2.9
13
84
0
58
2
28
21
47
1.64
79010--79071
3
20.3
3
77
9
54
56
1
0
41
1.09
79229--79841
76
8.0
76
93
0
1010
34
22
19
23
1.96
79845--80167
165
2.0
165
91
1
531
37
12
13
36
1.83
85402--85430
12
2.5
12
94
5
51
0
6
6
86
0.72
90976--91008
3
11.0
3
93
0
57
63
0
3
33
1.10
91779--91856
3
25.3
3
82
10
86
60
0
0
39
0.97
93994--94057
33
1.9
33
93
0
110
26
23
17
32
1.96
99530--99567
2
19.0
2
100
0
76
50
0
0
50
1.00
105036--105067
12
2.7
12
100
0
64
25
6
50
18
1.70
105883--105964
37
2.2
38
86
6
114
34
1
2
62
1.16
110712--110761
3
17.3
3
91
8
86
66
0
0
34
0.92

Tables:   1

The End!