genome.fa.s5597.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005597.1 Hibiscus syriacus cultivar Beakdansim tig00013021_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70205

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6963--7544	291	2.0	291	95	0	1047	30	10	36	22	1.88
12703--12750	10	4.8	10	97	0	87	29	31	0	39	1.57
12792--12832	18	2.3	18	87	4	57	29	7	2	60	1.36
14932--15003	26	3.0	24	68	27	62	26	5	4	63	1.34
18698--18763	34	1.9	34	100	0	132	30	18	15	36	1.91
33402--33430	4	7.2	4	100	0	58	75	0	0	24	0.80
35484--35508	3	8.3	3	100	0	50	68	0	0	32	0.90
35884--36171	20	14.2	20	79	10	275	42	22	19	15	1.89
35903--36171	60	4.4	63	81	11	303	41	22	19	16	1.90
36266--36305	6	6.7	6	100	0	80	32	50	17	0	1.47
36806--36880	6	12.5	6	100	0	150	0	16	50	33	1.45
36989--37384	20	19.6	20	80	12	368	16	19	23	40	1.91
46418--46459	20	2.0	22	86	9	61	40	14	26	19	1.89
49935--49980	19	2.3	20	81	3	58	54	13	6	26	1.62
51218--51293	13	5.9	13	78	1	73	31	2	15	50	1.58
51218--51293	26	3.0	26	84	1	91	31	2	15	50	1.58
51246--51309	26	2.5	26	84	5	67	32	0	18	48	1.49
53097--53182	44	2.0	44	90	0	136	30	26	18	24	1.98
53103--53204	21	4.8	22	77	15	90	33	27	17	21	1.96
53263--53294	13	2.3	15	89	10	50	37	15	0	46	1.46
53845--53954	20	5.4	20	69	20	84	31	30	10	27	1.91
53845--53980	41	3.3	41	91	0	227	30	31	11	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53861--53975	21	5.6	21	73	12	103	29	30	13	26	1.94
55576--55602	2	13.5	2	100	0	54	51	0	0	48	1.00
60121--60156	15	2.3	16	90	4	56	38	5	2	52	1.39
60301--60337	17	2.2	17	90	0	56	27	13	13	45	1.81
62427--62465	4	9.8	4	88	0	60	51	23	2	23	1.61

Tables:   1

The End!