genome.fa.s5598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005598.1 Hibiscus syriacus cultivar Beakdansim tig00013022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66613

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2368--2424	20	2.8	20	100	0	114	24	31	24	19	1.98
3890--3967	20	3.6	23	76	11	92	20	23	26	29	1.99
14644--14686	20	2.2	20	86	0	59	34	13	16	34	1.88
17731--17896	57	3.0	56	84	1	217	34	28	20	16	1.94
20418--20468	24	2.1	24	92	0	84	25	23	31	19	1.98
20407--20449	17	2.5	17	100	0	86	23	27	30	18	1.98
22490--22652	57	2.9	57	87	0	236	36	27	19	16	1.93
27625--27747	60	2.1	59	81	4	140	43	3	4	48	1.38
31175--31211	16	2.2	17	90	4	58	37	5	21	35	1.77
32485--32538	19	2.7	20	80	11	58	59	0	0	40	0.98
32893--32946	23	2.3	23	78	9	56	42	1	0	55	1.10
32925--32973	23	2.1	23	85	7	64	59	0	2	38	1.09
33483--33560	35	2.2	35	90	0	129	43	25	0	30	1.55
33483--33589	35	3.1	34	81	6	99	42	27	0	28	1.61
34539--34618	35	2.3	35	84	0	97	33	2	22	41	1.67
36056--36337	44	6.5	44	77	6	236	34	16	21	27	1.95
36073--36355	131	2.2	130	82	3	320	34	15	22	27	1.95
36052--36337	87	3.3	87	78	4	274	34	16	22	26	1.95
36542--36583	21	2.0	21	85	0	57	47	26	0	26	1.52
37547--37640	3	31.7	3	95	2	172	34	1	0	64	1.00
39037--39082	13	3.5	13	82	11	58	41	0	0	58	0.98
41926--42011	42	2.0	42	100	0	172	43	13	24	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49579--49604	2	13.0	2	100	0	52	50	0	0	50	1.00
54180--54232	18	2.9	18	100	0	106	26	33	16	22	1.96
55075--55128	21	2.6	21	90	0	72	37	20	18	24	1.94
60342--60388	12	3.9	12	82	0	67	25	14	14	44	1.84
60341--60390	24	2.1	24	92	0	82	30	14	14	42	1.84
60900--60951	2	26.0	2	100	0	104	50	0	0	50	1.00
62628--63045	207	2.0	207	97	1	786	20	22	19	37	1.94
64404--64457	23	2.3	23	84	12	67	24	12	18	44	1.85

Tables:   1

The End!