Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000056.1 Hibiscus syriacus cultivar Beakdansim tig00000083_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75850

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6855--6898
6
7.3
6
84
0
61
31
4
2
61
1.28
6940--7035
47
1.9
51
81
10
119
47
10
1
40
1.45
13270--13829
286
2.0
285
86
3
797
30
18
20
30
1.96
16366--16404
20
2.0
20
84
0
51
30
28
20
20
1.98
16409--16471
22
2.6
24
87
9
85
17
20
22
39
1.92
22290--22403
35
3.2
35
72
9
106
27
20
20
32
1.97
22266--22406
71
2.0
70
87
4
203
26
20
21
31
1.98
23471--23496
13
2.0
13
100
0
52
84
0
15
0
0.62
23468--23501
13
2.9
11
84
16
50
82
0
17
0
0.67
23468--23501
16
2.1
16
88
0
50
82
0
17
0
0.67
24520--24761
76
3.1
77
76
8
231
38
17
16
28
1.91
24911--25057
78
1.9
78
92
0
249
39
18
16
25
1.91
30050--30103
22
2.5
22
100
0
108
51
3
0
44
1.19
46525--46602
1
78.0
1
71
0
57
85
14
0
0
0.59
46525--46601
19
4.2
19
85
12
108
85
14
0
0
0.59
46642--46667
1
26.0
1
100
0
52
100
0
0
0
0.00
47411--47977
105
5.4
105
91
3
890
32
25
18
22
1.97
47412--47977
211
2.7
209
91
2
900
32
25
18
22
1.97
49653--49703
11
4.3
12
75
12
52
19
13
0
66
1.24
49968--50026
29
2.1
29
87
3
84
18
6
0
74
1.03
52617--52654
18
2.2
17
90
4
58
31
15
13
39
1.86
55807--55916
23
4.8
23
76
4
114
31
23
25
19
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55802--55916
46
2.5
46
95
0
212
31
23
25
20
1.98
61174--61238
22
2.9
23
74
4
69
32
21
26
20
1.97
67566--67633
33
2.0
34
88
2
102
36
30
14
17
1.90
70068--70121
27
2.0
27
86
13
76
42
0
5
51
1.25

Tables:   1

The End!