genome.fa.s560.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000560.1 Hibiscus syriacus cultivar Beakdansim tig00001093_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95159

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905--985	2	41.0	2	97	2	155	49	0	0	50	1.00
1244--1295	26	2.0	26	92	0	86	26	9	15	48	1.76
4187--4226	21	1.9	21	84	0	53	45	0	10	45	1.37
10820--10845	2	13.0	2	100	0	52	50	0	0	50	1.00
11613--11640	14	2.0	14	100	0	56	50	7	7	35	1.57
17496--17632	39	3.5	39	85	2	168	24	22	30	21	1.99
23740--23775	7	5.3	7	93	6	65	27	0	72	0	0.85
28186--28214	13	2.2	13	100	0	58	34	10	6	48	1.64
31826--31909	44	1.9	44	87	4	125	29	14	19	36	1.91
32926--33009	38	2.2	38	83	6	109	40	36	8	14	1.76
32367--33229	264	3.4	251	80	10	949	36	27	12	24	1.91
36199--36283	41	2.1	41	86	4	118	43	15	8	32	1.76
36568--36698	40	3.2	40	83	1	145	36	21	13	28	1.92
36607--36741	40	3.4	39	82	10	139	40	22	15	21	1.90
36681--36738	20	2.9	20	97	0	107	41	25	15	17	1.89
36852--36897	22	2.1	22	95	0	83	26	43	10	19	1.84
39415--39554	42	3.3	42	75	5	122	22	31	20	25	1.98
39438--39534	21	4.6	21	79	5	97	23	31	21	22	1.98
39482--39554	21	3.5	21	90	3	103	19	28	26	26	1.98
40972--41005	14	2.4	14	95	0	59	35	0	17	47	1.48
40915--41072	81	2.0	78	90	3	244	31	1	17	49	1.57
41185--41223	13	2.9	14	82	17	55	7	20	30	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41185--41227	14	3.1	14	78	18	54	9	18	27	44	1.80
41524--41573	12	4.2	12	89	0	64	16	0	24	60	1.36
41534--41574	6	6.8	6	94	0	73	17	0	19	63	1.31
41524--41574	18	2.8	18	87	0	75	15	0	23	60	1.35
44004--44037	12	2.8	12	90	0	50	14	0	29	55	1.40
44828--44896	19	3.5	19	88	6	66	33	14	18	33	1.91
44845--44896	19	2.6	21	93	6	90	28	13	21	36	1.91
44884--44927	20	2.2	20	100	0	88	13	9	27	50	1.72
44924--44967	20	2.2	20	91	0	70	20	15	20	43	1.88
44958--45011	20	2.7	19	75	8	63	24	14	33	27	1.94
45363--45412	21	2.4	21	77	9	57	36	20	18	26	1.95
45443--45633	20	9.6	20	84	4	233	35	25	17	21	1.95
46321--46366	24	2.0	23	87	12	67	26	15	21	36	1.93
48639--48851	33	6.2	33	77	13	191	46	17	22	14	1.84
48653--48857	19	11.7	19	70	23	164	45	17	21	15	1.85
48653--48818	54	3.2	53	91	5	266	46	16	21	14	1.83
48778--48832	14	3.6	14	73	21	56	45	20	23	10	1.82
48639--48857	87	2.6	85	85	7	275	45	17	22	15	1.85
48847--48963	53	2.2	53	98	1	227	13	23	17	44	1.85
48866--48963	19	5.4	19	84	13	143	14	22	17	45	1.84
49163--49198	11	3.2	11	88	4	54	63	19	0	16	1.30
49756--49812	27	2.1	27	100	0	114	31	14	38	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51021--51184	19	9.1	19	76	13	141	46	23	19	10	1.81
51096--51184	33	2.7	33	92	0	151	46	20	21	12	1.83
51189--51247	19	3.4	19	77	22	83	6	15	30	47	1.71
51205--51231	14	1.9	14	100	0	54	7	14	29	48	1.71
51189--51311	33	3.8	32	85	5	149	8	17	26	47	1.77
51238--51293	14	3.7	14	76	17	58	8	21	23	46	1.79
51200--51294	32	2.9	32	87	4	129	7	18	25	48	1.74
51358--51636	91	3.1	92	96	2	519	46	19	12	21	1.83
53313--53409	20	5.2	20	72	18	100	46	17	24	11	1.81
53311--53375	21	3.1	21	82	4	96	47	15	26	10	1.78
53360--53416	14	3.7	14	75	20	60	43	22	24	8	1.81
53311--53433	33	3.5	33	90	8	165	46	18	24	10	1.81
53449--53505	14	3.7	14	75	20	60	8	24	22	43	1.81
53444--53521	33	2.3	34	95	2	140	7	24	20	47	1.76
53460--53565	21	5.6	20	76	15	109	13	21	18	46	1.83
53644--53714	33	2.2	33	92	0	115	49	16	22	11	1.78
54094--54266	20	8.6	20	83	6	206	18	19	27	35	1.95
54260--54309	21	2.4	20	80	9	55	26	18	20	36	1.95
60112--60163	23	2.2	24	74	16	56	48	17	13	21	1.81
71873--72121	131	1.9	131	92	0	419	35	14	13	36	1.85
71887--72152	131	2.0	129	81	5	302	38	12	13	34	1.83
72446--72508	28	2.3	27	78	8	63	46	1	3	49	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72585--72618	16	2.0	18	88	11	54	64	5	2	26	1.30
72739--72781	21	2.0	21	100	0	86	39	0	13	46	1.44
72750--72835	35	2.5	35	84	0	100	37	1	20	40	1.61
81543--81574	15	2.1	15	100	0	64	31	18	6	43	1.75
84587--84626	21	2.0	20	85	5	53	32	2	2	62	1.22
84976--85061	29	3.0	29	92	0	136	38	5	17	38	1.74
93841--93886	19	2.3	19	88	11	65	58	4	2	34	1.30

Tables:   1

The End!