genome.fa.s5600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005600.1 Hibiscus syriacus cultivar Beakdansim tig00013026_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74067

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14152--14244	43	2.3	38	80	18	116	39	11	6	41	1.67
14161--14243	43	2.0	42	95	2	148	38	12	7	42	1.70
16748--16785	19	2.1	18	85	14	51	26	13	0	60	1.33
19656--19712	17	3.2	17	82	7	69	17	1	3	77	1.00
19656--19712	13	4.2	14	77	20	59	17	1	3	77	1.00
23689--23750	29	2.3	29	86	10	87	62	0	1	35	1.05
23722--23801	24	3.5	21	71	21	63	65	1	0	33	1.01
29927--29993	20	3.3	20	91	0	107	35	23	17	22	1.95
29987--30033	20	2.3	20	89	7	69	38	27	17	17	1.91
29922--30017	40	2.4	38	80	16	122	38	23	17	19	1.93
29999--30037	20	2.0	20	100	0	78	35	25	20	17	1.95
30142--30221	22	3.6	22	91	0	133	22	45	15	17	1.85
30607--30661	20	2.8	19	81	8	65	16	16	20	47	1.83
32780--32833	21	2.6	21	87	0	81	29	35	18	16	1.93
32822--32889	21	3.2	21	80	0	82	20	38	25	16	1.92
34150--34295	68	2.2	66	92	4	242	29	1	17	51	1.54
34373--34411	13	2.9	14	82	17	55	7	20	30	41	1.80
34373--34415	14	3.1	14	78	18	54	9	18	27	44	1.80
34399--34464	20	3.3	20	93	0	105	18	16	21	43	1.87
37891--37930	16	2.5	16	83	0	53	67	0	5	27	1.11
38106--38159	19	2.8	19	85	2	72	33	7	22	37	1.82
38087--38297	20	10.6	20	72	8	108	24	12	25	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38087--38178	39	2.3	40	83	5	107	29	10	22	36	1.88
38157--38258	40	2.5	40	84	10	145	21	15	23	39	1.92
45767--45860	20	4.6	20	80	10	118	11	23	22	42	1.86
45810--45969	22	7.5	22	71	13	147	19	17	23	39	1.92
45790--45966	42	4.2	40	88	7	237	18	18	23	40	1.92
45810--45975	43	4.0	41	87	6	217	21	16	22	38	1.93
46046--46089	6	7.7	6	97	2	74	29	52	18	0	1.46
46981--47007	6	4.5	6	100	0	54	0	14	51	33	1.43
47101--47169	19	3.5	19	73	11	75	39	21	20	18	1.93
47118--47190	22	3.5	22	70	11	71	39	26	17	16	1.91
47101--47249	41	3.6	41	84	8	169	40	23	18	17	1.91
47186--47254	20	3.4	20	70	4	66	40	23	20	15	1.91
47202--47273	21	3.5	21	69	3	74	34	26	16	22	1.95
47138--47279	41	3.5	41	83	3	162	38	23	17	19	1.93
47218--47283	21	3.2	21	65	4	53	39	25	15	19	1.91
48544--48579	16	2.2	16	100	0	72	19	36	13	30	1.91
56509--56562	23	2.3	23	84	12	67	44	18	12	24	1.85
57860--58281	209	2.0	209	99	0	826	37	19	22	20	1.94
59966--60019	2	27.0	2	100	0	108	50	0	0	50	1.00
60510--60568	12	5.0	11	76	13	55	45	15	13	25	1.82
60510--60569	24	2.5	24	88	0	84	45	15	13	26	1.83
62513--62646	60	2.2	60	82	5	155	32	13	16	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63020--63061	23	1.9	21	85	9	57	59	0	0	40	0.97
65834--65889	21	2.7	21	88	0	85	25	19	19	35	1.95
66731--66783	18	2.9	18	100	0	106	22	16	33	26	1.96
70323--70352	13	2.3	13	94	0	51	23	10	6	60	1.52
71363--71394	2	16.0	2	100	0	64	50	0	0	50	1.00
73462--73503	10	4.3	10	90	3	59	78	7	2	11	1.04

Tables:   1

The End!