genome.fa.s5601.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005601.1 Hibiscus syriacus cultivar Beakdansim tig00013029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92345

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4206--4451	128	1.9	129	90	0	395	35	12	15	36	1.85
4836--4911	35	2.2	35	90	0	116	36	1	22	39	1.63
14217--14272	29	1.9	29	82	7	69	17	8	16	57	1.64
19229--19265	2	18.5	2	100	0	74	48	0	0	51	1.00
20010--20068	31	1.9	31	92	0	100	40	6	10	42	1.65
20093--20135	22	2.0	22	100	0	86	51	13	0	34	1.42
20095--20143	22	2.2	22	88	3	71	55	14	0	30	1.40
20083--20541	54	8.5	54	76	12	453	52	12	0	34	1.39
20083--20485	80	4.9	83	86	10	509	52	12	0	34	1.39
20297--20350	14	3.6	14	72	18	54	59	3	0	37	1.15
20307--20457	76	2.0	76	94	0	266	52	10	0	37	1.36
20339--20403	22	3.0	22	95	0	121	50	12	0	36	1.40
20195--20677	108	4.5	107	78	11	418	53	12	0	34	1.40
20415--20457	22	2.0	22	95	0	77	51	11	0	37	1.39
20417--20465	22	2.2	22	85	3	62	55	12	0	32	1.37
20471--20519	22	2.2	22	85	3	62	57	12	0	30	1.36
20083--20672	188	3.1	188	83	6	827	53	12	0	34	1.41
20554--20677	54	2.3	54	90	0	194	53	11	0	34	1.43
20606--20654	22	2.2	22	85	7	64	55	14	0	30	1.40
20630--20686	18	3.4	18	69	18	59	54	12	0	33	1.38
20631--20701	32	2.4	29	86	9	90	52	9	0	38	1.35
20648--20797	15	9.5	15	74	15	133	50	4	0	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27687--27725	20	2.0	20	85	10	53	46	0	5	48	1.24
42422--42448	2	13.5	2	100	0	54	48	0	0	51	1.00
42472--42506	16	2.2	16	89	0	52	42	0	0	57	0.99
42480--42523	16	2.8	16	83	16	56	36	2	0	61	1.09
43505--43540	16	2.3	16	90	4	56	30	5	0	63	1.17
47302--47336	16	2.1	17	89	5	54	60	0	2	37	1.12
53529--53668	71	2.0	71	100	0	280	47	7	11	32	1.68
58393--58446	23	2.5	20	81	18	65	29	1	1	66	1.12
58395--58447	20	2.7	18	76	18	52	30	1	1	66	1.13
58517--58552	2	18.0	2	100	0	72	50	0	0	50	1.00
59752--59785	10	3.4	10	87	0	50	20	5	0	73	1.04
69172--69266	48	1.9	50	85	4	131	47	13	23	15	1.81
70010--70677	105	6.4	105	98	0	1266	33	25	18	22	1.96
72782--72835	23	2.5	20	81	18	65	29	1	1	66	1.12
72784--72836	20	2.7	18	76	18	52	30	1	1	66	1.13
72847--72872	13	2.0	13	100	0	52	7	7	0	84	0.77
73624--73648	12	2.1	12	100	0	50	76	0	8	16	1.02
74884--74919	19	1.9	18	88	5	54	41	2	0	55	1.14
77322--77433	47	2.5	44	85	4	134	39	9	20	30	1.85
77924--77948	7	3.6	7	100	0	50	16	32	12	40	1.84
81185--81324	70	2.0	70	100	0	280	37	12	20	30	1.90
82900--82955	27	2.1	27	89	0	85	32	16	21	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82797--83475	135	5.0	133	80	7	683	29	16	19	34	1.94
83174--83230	27	2.1	28	83	3	71	33	15	17	33	1.92
82868--83475	275	2.2	274	88	3	897	30	16	18	34	1.94
83608--83722	60	1.9	60	92	0	194	26	17	20	35	1.95
86648--86797	75	2.0	75	94	2	266	44	18	1	35	1.58
87109--87191	30	2.7	31	81	9	91	44	21	12	21	1.84
87137--87195	31	1.9	30	93	3	100	40	23	13	22	1.89
89574--89632	24	2.5	24	83	5	68	33	23	22	20	1.97
89574--89639	23	2.8	24	84	4	73	31	22	22	22	1.98
89659--89979	103	3.1	103	94	0	570	37	23	12	27	1.91
91157--91197	21	2.0	21	85	0	55	17	24	29	29	1.97

Tables:   1

The End!