Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005603.1 Hibiscus syriacus cultivar Beakdansim tig00013031_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112564

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6852--6924
23
3.2
23
71
19
62
75
2
6
15
1.13
7300--7354
27
2.1
26
83
10
67
60
0
5
34
1.20
8513--8551
2
20.5
2
89
10
64
51
0
0
48
1.00
10082--10116
2
17.5
2
100
0
70
51
0
0
48
1.00
15448--15499
20
2.5
21
84
3
70
38
19
23
19
1.93
15485--15562
41
1.9
41
91
0
129
38
25
16
19
1.92
15488--15582
20
4.7
20
79
7
111
35
26
17
20
1.95
16312--16365
24
2.2
24
90
0
81
22
16
20
40
1.91
18857--18977
33
3.7
33
85
4
181
45
19
20
14
1.85
18857--18921
19
3.7
19
70
19
68
46
20
21
12
1.83
18861--18948
19
5.2
19
64
25
61
47
19
18
14
1.82
18997--19057
19
3.5
19
65
21
51
13
21
21
44
1.86
18980--19057
33
2.4
33
88
0
120
12
24
20
42
1.87
19164--19200
14
2.6
14
91
0
65
45
24
0
29
1.53
22526--22561
18
2.0
18
88
0
54
52
0
16
30
1.44
23706--23795
23
3.8
24
77
4
103
25
15
21
37
1.92
25618--25697
42
1.9
42
84
0
106
22
17
38
21
1.93
25919--26103
91
2.0
90
90
6
291
47
18
12
22
1.82
27790--27926
19
7.1
19
89
3
193
45
18
21
13
1.83
27916--27966
19
2.7
18
79
8
57
15
17
23
43
1.88
28519--28571
20
2.7
20
90
0
79
26
18
28
26
1.98
28540--28634
41
2.3
41
80
3
102
21
18
23
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28684--28724
21
2.0
21
85
0
55
34
29
17
19
1.94
36889--36941
21
2.4
21
87
6
70
39
13
1
45
1.54
37121--37196
30
2.5
30
85
4
91
14
5
17
63
1.48
46288--46439
30
5.4
31
76
20
136
52
10
0
36
1.36
46348--46389
21
2.0
22
95
4
77
50
14
0
35
1.43
46322--46421
51
1.9
52
90
6
159
52
13
0
35
1.40
46271--46437
82
2.0
82
88
5
248
52
11
0
35
1.37
47901--47944
21
2.1
21
100
0
88
38
13
25
22
1.91
50081--50140
19
2.9
21
63
12
52
40
23
16
20
1.91
50152--50192
21
2.0
21
100
0
82
29
29
14
26
1.95
78086--78153
34
2.0
34
86
11
95
45
7
8
38
1.63
79666--79708
22
2.0
22
86
9
61
53
4
0
41
1.21
87136--87446
151
2.1
148
95
3
568
32
20
20
26
1.97
89719--89751
15
2.1
16
88
5
50
33
15
27
24
1.95
103952--104035
39
2.2
39
97
0
159
35
15
22
26
1.94
104261--104296
19
1.9
18
88
5
54
77
0
11
11
0.99

Tables:   1

The End!