Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005606.1 Hibiscus syriacus cultivar Beakdansim tig00013040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3509357
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 11
Found at i:2502007 original size:18 final size:17
Alignment explanation
Indices: 2501967--2502008 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
2501957 GACCACTAAA
2501967 ATAAAAAATCAATTAGT
1 ATAAAAAATCAATTAGT
2501984 ATAAAAAATCAATTAGT
1 ATAAAAAATCAATTAGT
*
2502001 TTAAAAAA
1 ATAAAAAA
2502009 GAATAATGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (17 bp):
ATAAAAAATCAATTAGT
Found at i:2503512 original size:15 final size:15
Alignment explanation
Indices: 2503494--2503568 Score: 53
Period size: 16 Copynumber: 4.9 Consensus size: 15
2503484 ATGCAAATAC
2503494 AGAAAATAAAATGCA
1 AGAAAATAAAATGCA
*
2503509 AGAAATAAAAAATG-A
1 AGAAA-ATAAAATGCA
**
2503524 CTAAAATAAAATGCA
1 AGAAAATAAAATGCA
* **
2503539 ACAAAATTAAAGGGCA
1 AGAAAA-TAAAATGCA
*
2503555 AAAACAATAAAATG
1 AGAA-AATAAAATG
2503569 TTGAAATTTA
Statistics
Matches: 45, Mismatches: 11, Indels: 7
0.71 0.17 0.11
Matches are distributed among these distances:
14 7 0.16
15 14 0.31
16 22 0.49
17 2 0.04
ACGTcount: A:0.65, C:0.08, G:0.12, T:0.15
Consensus pattern (15 bp):
AGAAAATAAAATGCA
Found at i:2503813 original size:34 final size:33
Alignment explanation
Indices: 2503756--2503850 Score: 111
Period size: 34 Copynumber: 2.8 Consensus size: 33
2503746 GTTTGTGCAA
* *
2503756 TAAAGTAAAATGTTAGTAAGTTAGTAAGAACAA-
1 TAAAATAAAA-GTTAGTATGTTAGTAAGAACAAG
* *
2503789 TAAAAATGAGAAGTTAGTATGTTAGTATGAACAAG
1 T-AAAAT-AAAAGTTAGTATGTTAGTAAGAACAAG
*
2503824 TAAAATAAAAGTTAGAATGTTAGTAAG
1 TAAAATAAAAGTTAGTATGTTAGTAAG
2503851 TTAGAAAAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
33 19 0.37
34 29 0.56
35 4 0.08
ACGTcount: A:0.49, C:0.02, G:0.20, T:0.28
Consensus pattern (33 bp):
TAAAATAAAAGTTAGTATGTTAGTAAGAACAAG
Found at i:2504051 original size:126 final size:123
Alignment explanation
Indices: 2503888--2504165 Score: 400
Period size: 126 Copynumber: 2.2 Consensus size: 123
2503878 AAGAGTCCAG
* *
2503888 ACCATAATAATGTGGTTCTTATACCAGATCGAGTCACCACAAGGTCGAATCAAATAATACAAACA
1 ACCATAATAATGTGGATCTTACACCAGATCGAGTCACCACAAGGTCGAATCAAATAATACAAACA
*
2503953 AATATATAAAAAATAAAATAGAATAAATAAAATAAGAAAT-TTAGTGGTTAACACAGTCTGA
66 AATATAT-AAAAATAAAATA-AAT-AA-AAAATAAAAAATATTAGTGGTTAACACAGTCTGA
* * *
2504014 ACCATAATAATGTGGATCTTACCCCTA-ATCGAGTCACCACAAGGTCGAATCGAATAATGCAAAC
1 ACCATAATAATGTGGATCTTACACC-AGATCGAGTCACCACAAGGTCGAATCAAATAATACAAAC
** *
2504078 AAATATATAAAAATAAAATAAATAAAAAATAAAAAATATTAGTGGTTAGTAGAGTCTGA
65 AAATATATAAAAATAAAATAAATAAAAAATAAAAAATATTAGTGGTTAACACAGTCTGA
2504137 ACCATAATAATGTGGATCTTATC-CCAGAT
1 ACCATAATAATGTGGATCTTA-CACCAGAT
2504166 TGGGTCACTG
Statistics
Matches: 139, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
122 12 0.09
123 45 0.32
124 4 0.03
125 12 0.09
126 65 0.47
127 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.13, T:0.25
Consensus pattern (123 bp):
ACCATAATAATGTGGATCTTACACCAGATCGAGTCACCACAAGGTCGAATCAAATAATACAAACA
AATATATAAAAATAAAATAAATAAAAAATAAAAAATATTAGTGGTTAACACAGTCTGA
Found at i:2525823 original size:15 final size:15
Alignment explanation
Indices: 2525803--2525833 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
2525793 CAAAGCTTGA
2525803 TTCAAATAGTGAGTT
1 TTCAAATAGTGAGTT
2525818 TTCAAATAGTGAGTT
1 TTCAAATAGTGAGTT
2525833 T
1 T
2525834 GATATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (15 bp):
TTCAAATAGTGAGTT
Found at i:2528365 original size:91 final size:90
Alignment explanation
Indices: 2528089--2528366 Score: 212
Period size: 91 Copynumber: 3.1 Consensus size: 90
2528079 AAAGTTTCCA
* *
2528089 AACTTTAAAGTAGTATGTTTTTGCAAGTTTC-AAAACTCTTGGTCAAAGCTTGATTCAAATAGTG
1 AACTTTAAAGTAATATG-TTTTGCAAGTTTCAAAAAAT-TTGGTCAAAGCTTGATTCAAATAGTG
2528153 AGTTTTGATATTTTTTAAGAAAATTCT
64 AGTTTTGATATTTTTTAAGAAAATTCT
* ** * * * * * * **
2528180 AACTTTAAA--AAT-TGTTCTAAAGAGTTTGAATGATATTTGTGTCGTAA-TTTGAACTTTAAGG
1 AACTTTAAAGTAATATGTTTTGCA-AGTTTCAA-AAAATTTG-GTC-AAAGCTTG-A-TTCAAAT
* * * * * ** *
2528241 AAT--GTTTTGAAACTCTTGAA-AAGCTTTCA
60 AGTGAGTTTTGATATTTTTTAAGAA-AATTCT
*
2528270 AACTTTAAAGTACTATGATTTTGCAAGTTTCAAAAAATTTGGTCAAAGCTTGATTCAAATAGTGA
1 AACTTTAAAGTAATATG-TTTTGCAAGTTTCAAAAAATTTGGTCAAAGCTTGATTCAAATAGTGA
2528335 GTTTTGATATTTTTTAAGAAAATTCT
65 GTTTTGATATTTTTTAAGAAAATTCT
2528361 AACTTT
1 AACTTT
2528367 GAAAATTGTT
Statistics
Matches: 130, Mismatches: 41, Indels: 32
0.64 0.20 0.16
Matches are distributed among these distances:
87 4 0.03
88 7 0.05
89 14 0.11
90 36 0.28
91 40 0.31
92 16 0.12
93 9 0.07
94 4 0.03
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (90 bp):
AACTTTAAAGTAATATGTTTTGCAAGTTTCAAAAAATTTGGTCAAAGCTTGATTCAAATAGTGAG
TTTTGATATTTTTTAAGAAAATTCT
Found at i:2528664 original size:181 final size:181
Alignment explanation
Indices: 2522170--2528662 Score: 9152
Period size: 181 Copynumber: 36.2 Consensus size: 181
2522160 ATACTTTACC
*
2522170 CTTTAAAGGATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
*
2522235 TTTGATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
2522300 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
* *
2522351 CTTTAAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
*
2522416 TTTGATAATTTTTGAGAAAATTC-AACCTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
66 TTTGATATTTTTTGAGAAAATTCTAA-CTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
*
2522480 GACATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAA
130 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
2522532 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* *
2522597 TTTGATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTATAGAGTTTGAATGATATATTTT
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG--ATA-TTT
* * *
2522662 TTTACATTATTTGAACTTTAATGAAAGTATT-GAAACTCTTGAAAAGTTTCCAAA
128 TTGACATAATTTGAACTTTAAGGAAAGT-TTCGAAACTCTTGAAAAGTTTCCAAA
2522716 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * * *
2522781 TTTCATATTTTTTTAGAAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
* *
2522846 AGATAATTTGAACTTTAAGGAAATTTTCGAAACTCTTGAAAAGTTTCCAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2522897 CTTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCATGATTCAAATAGTGAG
1 C-TTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAG
2522962 TTTTGATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTT
65 TTTTGATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTT
* *
2523026 TGACATAATTTGAACTTTAAGGAAAGTGTCGACACTCTTGAAAAGTTTCCAAA
129 TGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2523079 CTTTAAAGTAGTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * *
2523144 TTTGATATTTTTTAAGAAAATTCTAACTTTAAAAATTGTTCTAAAGAGTTTGAATGATATTTGTG
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
* * * *
2523209 TCGTAATTTGAACTTTAAGGAATGTTTTGAAACTCTTGAAAAGCTTT-CAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAG-TTTCCAAA
* * * *
2523260 CTTTAAAGTACTATGATTTTGCAAGTTTCAAAAATTTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* *
2523325 TTTGATATTTTTTAAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGATTGATAATTTTT
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGAT-ATTTTT
2523390 -ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
130 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
* * * *
2523441 CTTTAAAGTATTTTGTTTTTGCAAGTTTCGAAACACTTGGTCAAAGCTTGATTCAAAGAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* *
2523506 TTTGATATTTTTTGAGAAAATTCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTT
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
* * *
2523571 ACATAATTTGAACTTTAAGGAAAGTGTCAAAACTCTTGAATAGTTTCCAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2523622 CTTTAAAGTATTATGTTTTTCCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGT-AGG
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGA-G
* * *
2523686 TTTTGATATTTTTTGAGAAAATCCTAACTTTTAAAATTGTTTTAAAGAGTTTGAATGATATTTTT
65 TTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTT
* * * ** ****
2523751 TTACATAATTTGAACTTTAAGGAAAATTTCAAAACT-TT--ACTGTATT-TTGT
129 TGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT-TTCCAAA
* * *** * * * *
2523801 TTTTGCAAGT-TTCAAAACTCTTG---G--TCAAAA--CTTGATTC--A-C---A-T-AGAGAGT
1 CTTT-AAAGTATT--ATGTTTTTGCAAGTTTCAAAACTCTTG-GTCAAAGCTTGATTCAAATAGT
* * *
2523850 ---TTTCAT-ATTTTTTTTGAGAAAATTCTAACTTTGAAAATTATTCTAAAGAGTTTTAATGATA
62 GAGTTT--TGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA
2523911 TTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
125 TTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
* * * *
2523968 ATTTAAAGTATTAAGTTTTTGCAAGTTTCAAAACTCTTGGTCAGAGTTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * * * *
2524033 TTTTATATTTTTTTCAGAAAATTCCAACTTTGAAAATTGTTCTAAAGTGTTTGAATGTTATTTTT
66 TTTGATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTT
* * * *
2524098 TTACATAATTTGAATTTTAGGGGAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
129 TGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2524151 CTTTAAAGTATTATGTTTTTTCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * *
2524216 TTTGATTTTTTTTTTTTTTAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATTATA-
66 TTTGA-----TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATAT
* * * *
2524280 TTTTGACATAGTTTGAACTTTAAGGAAAGTTTCAAAACTCATGAAAAGTTTTCAAA
126 TTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
2524336 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* *
2524401 TTTGATATTTTTTGAGAAACA-TCAAACTTTGAAAATTATTCTAAAGAGTTTGAATGATATTTTT
66 TTTGATATTTTTTGAGAAA-ATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
* *
2524465 GACATAATTTAAACTTCAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
130 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2524517 CTTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTTAAAGCTTGATTCAAATAGTGAG
1 C-TTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAG
* * *
2524582 TTTTCATATTTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAGTTTGAATGATATT
65 TTTTGATA---TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATT
* * *
2524647 TTTTACATTATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
127 TTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
**
2524702 CTTTAAAGTATTATGTTTTCCCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
*
2524767 TTTGATATTTTTTGAGAAAATTCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
2524832 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
* *
2524883 CTTTAAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAATAGTGAG-
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
2524947 TTTGATA-TTTTTGAG-AAATTC-AACCTTTG-AAA-TGTTCTAAAGAG-TTGAATGA-ATTTTT
66 TTTGATATTTTTTGAGAAAATTCTAA-CTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
*
2525005 GACATAATTTGAACTTTAAGG-AAGTTTCAAAACTCTTG-AAAGTTTCC-AA
130 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
2525054 CTTTCAAAGTATTA-GTTTTTGCAAGTTTCAAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGA
1 CTTT-AAAGTATTATGTTTTTGCAAGTTTC-AAAACTCTTGGTCAAAGCTTGATTCAAATAGTGA
* *
2525118 GTTTTGATA-TTTTTGAGAAAATTCCAAC-TTGAAAATTGTTCTATAGAGTTTGAATGATATATT
64 GTTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATAT-TT
** *
2525181 TT--TTTACATTTGAACTTTAATGAAAGTATT-GAAACTCTTGAAAAGTTTCCAAA
128 TTGACATA-ATTTGAACTTTAAGGAAAGT-TTCGAAACTCTTGAAAAGTTTCCAAA
2525234 CTTTAAAGTATTATG-TTTTGCAAGTTTCAAAACTCTTGGTCAAAGC-TGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * *
2525297 TTTCATATTTTTTTAGAAAA-TCCAACTTTG-AAATTGTTCTAAAGAG-TT---TGATA-TTTTG
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
* *
2525355 AGATAATTTG-ACTTTAAGG-AATTTTCGAAACTCTTG-AAAGTTTCCAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2525403 CTTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCATGATTC-AATAGTGAG
1 C-TTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAG
*
2525467 TTTTGATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTG-ATTATA-TTT
65 TTTTGATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTT
*
2525530 TGACATAATTTGAACTTTAAGG-AAG--TCGACACTCTTG-AAAGTTTCCAAA
129 TGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2525579 CTTTAAAGTAGTATGTTTTTGCAAGTTTC-AAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * *
2525643 TTTGATA-TTTTTAAGAAAATTCTAACTTT-AAAAATGTTCT-AAGAGTTTGAATGATA-TTGTG
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
* * * *
2525704 TCGTAATTTGAACTTTAAGGAATGTTTTGAAACTCTTG-AAAGCTTT-CAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAG-TTTCCAAA
* * *
2525754 CTTT-AAGTACTATGATTTTGCAAGTTTCAAAAAT-TTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAG-
*
2525817 TTTCAAATAGTGAGTTTGATATTTTTTA-AGAAATTCTAACTTTG--AATTG-TCTAAAGAGTTT
65 -TT----T--TGA---T-AT-TTTTTGAGA-AAATTCTAACTTTGAAAATTGTTCTAAAGAGTTT
* *
2525878 GATTGATAATTTTT-ACATAATTTGAACTTTAAGGAATGTTTCGAAACTCTTGAAAAGTTTCCAA
117 GAATGAT-ATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAA
2525942 A
181 A
* * * *
2525943 CTTTAAAGTATTTTGTTTTTGCAAGTTTCGAAACACTTGGTCAAAGCTTGATTCAAAGAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* *
2526008 TTTGATATTTTTTGAGAAAATTCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTT
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
* * *
2526073 ACATAATTTGAACTTTAAGGAAAGTGTCAAAACTCTTGAATAGTTTCCAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2526124 CTTTAAAGTATTATGTTTTTCCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGT-AGG
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGA-G
* *
2526188 TTTTGATATTTTTTGAGAAAATTCTAACTTTTAAAATTGTTTTAAAGAGTTTGAATGATATTTTT
65 TTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTT
* * * ** ****
2526253 TTACATAATTTGAACTTTAAGGAAAATTTCAAAACT-TT--ACTGTATT-TTGT
129 TGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT-TTCCAAA
* * *** * * * *
2526303 TTTTGCAAGT-TTCAAAACTCTTG---G--TCAAAA--CTTGATTC--A-C---A-T-AGAGAGT
1 CTTT-AAAGTATT--ATGTTTTTGCAAGTTTCAAAACTCTTG-GTCAAAGCTTGATTCAAATAGT
* * *
2526352 ---TTTCAT-ATTTTTTTTGAGAAAATTCTAACTTTGAAAATTATTCTAAAGAGTTTTAATGATA
62 GAGTTT--TGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA
2526413 TTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
125 TTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
* *
2526470 ATTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * *
2526535 TTT-ATATTTTTTTTTCAGAAAATTC-AAC-TTGAAAATTGTTCTAAAGTGTTTGAATGTTATTT
66 TTTGATA---TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TT
* * * *
2526597 TTTTACATAATTTGAATTTTAGGGGAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
127 TTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2526652 CTTTAAAGTATTATGTTTTTTCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * *
2526717 TTTGATTTTTTTTTTTTTAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATTATA-T
66 TTTGA----TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATT
* * * *
2526781 TTTGACATAGTTTGAACTTTAAGGAAAGTTTCAAAACTCATGAAAAGTTTTCAAA
127 TTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
2526836 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* *
2526901 TTTGATATTTTTTGAGAAACA-TCAAACTTTGAAAATTATTCTAAAGAGTTTGAATGATATTTTT
66 TTTGATATTTTTTGAGAAA-ATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
*
2526965 GACATAATTT-AACTTCAAGG-AAGTTTCGAAACTCTTGAAAAGTTTCCAAA
130 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2527015 CTTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTTAAAGCTTGATTCAAATAGTGAG
1 C-TTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAG
* * *
2527080 TTTTCATATTTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAGTTTGAATGATATT
65 TTTTGATA---TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATT
* * *
2527145 TTTTACATTATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
127 TTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2527200 CTTTAAAGTATTATGTTTTTCCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
*
2527265 TTTGATATTTTTTGAGAAAATTCTAACTTTTAAAATTGTTCTAAAGAG-TTGAATGATA-TTTTG
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
2527328 ACATAATTTGAACTTTAAGGAAAGTTTCG-AACTCTTGAAAAGTTTCCAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
* *
2527378 CTTTAAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
*
2527443 TTTGATATTTTTTGATAAAATTC-AACCTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
66 TTTGATATTTTTTGAGAAAATTCTAA-CTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
*
2527507 GACATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAA
130 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
2527559 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* *
2527624 TTTGATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTATAGAGTTTGAAT-ATATTTTTT
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTTT
* * *
2527688 TACATTATTTGAACTTT-ATGAAAGTATT-GAAACTCTTGAAAAGTTTCCAAA
130 GACATAATTTGAACTTTAAGGAAAGT-TTCGAAACTCTTGAAAAGTTTCCAAA
*
2527739 CTTTAAAGTATTATGTTTTTGC-AGTTTCAAAACTCTTGGTCAAAGCTCGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * * *
2527803 TTTCATATTTTTTTAGAAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
* *
2527868 AGATAATTTGAACTTTAAGGAAATTTTCGAAACTCTTGAAAAGTTTCCAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2527919 CTTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTC-TGGTCAAAGCATGATTC-AA-AGTGAG
1 C-TTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAG
2527981 -TTTG--ATTTTTTGAGAAAATTCTAACTTTGAAAATTG-TCT-AA-AGTTTGAAT-ATATTTTT
65 TTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
* *
2528039 GACATAATTTGAACTTTAAGGAAAGTGTCGACACTCTTGAAAAGTTTCCAAA
130 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2528091 CTTTAAAGTAGTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* * *
2528156 TTTGATATTTTTTAAGAAAATTCTAACTTTAAAAATTGTTCTAAAGAGTTTGAATGATATTTGTG
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
* * * *
2528221 TCGTAATTTGAACTTTAAGGAATGTTTTGAAACTCTTGAAAAGCTTT-CAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAG-TTTCCAAA
* * *
2528272 CTTTAAAGTACTATGATTTTGCAAGTTTCAAAAAAT-TTGGTCAAAGCTTGATTCAAATAGTGAG
1 CTTTAAAGTATTATGTTTTTGCAAGTTTC-AAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAG
* *
2528336 TTTTGATATTTTTTAAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGATTGATAATTTT
65 TTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGAT-ATTTT
*
2528401 T-ACATAATTTGAACTTTAAGGAATGTTTCGAAACTCTTGAAAAGTTTCCAAA
129 TGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
* * * *
2528453 CTTTAAAGTATTTTGTTTTTGCAAGTTTCGAAACACTTGGTCAAAGCTTGATTCAAAGAGTGAGT
1 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* *
2528518 TTTGATATTTTTTGAGAAAATTCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTT
66 TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
* * *
2528583 ACATAATTTGAACTTTAAGGAAAGTGTCAAAACTCTTGAATAGTTTCCAAA
131 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2528634 CTTTAAAGTATTATGTTTTTCCAAGTTTC
1 CTTTAAAGTATTATGTTTTTGCAAGTTTC
2528663 GAGAAAATTC
Statistics
Matches: 5688, Mismatches: 416, Indels: 416
0.87 0.06 0.06
Matches are distributed among these distances:
164 80 0.01
165 114 0.02
166 14 0.00
167 26 0.00
168 4 0.00
169 17 0.00
170 39 0.01
171 127 0.02
172 194 0.03
173 88 0.02
174 142 0.02
175 104 0.02
176 94 0.02
177 117 0.02
178 225 0.04
179 260 0.05
180 429 0.08
181 1959 0.34
182 489 0.09
183 243 0.04
184 443 0.08
185 254 0.04
186 32 0.01
187 67 0.01
188 59 0.01
189 17 0.00
190 24 0.00
191 27 0.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.41
Consensus pattern (181 bp):
CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
TTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTG
ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
Found at i:2529670 original size:366 final size:361
Alignment explanation
Indices: 2528735--2530835 Score: 2904
Period size: 366 Copynumber: 5.9 Consensus size: 361
2528725 GAACTTTAAG
* ** * *
2528735 GAAAA-TTTCAAAACTTTACTGTATTTTGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAACTTGA
1 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
* * *
2528799 TTCACATAGAGAGTTTTCATATTTTTTTTGAGAAAATTCTAACTTTG-AAATT-ATTCTAAAGAG
66 TTCAAATAGTGAGTTTTCATATTTTTTTTGAAAAAATTCTAACTTTGAAAATTGA-TCTAAAGAG
* * *
2528862 TTTTAATGATA-TTTTGACA-TAATTGAACTTTAAGGAAAGTTCGAAACTCTTGAAAAGTTTCCA
130 TTTGAATGATATTTTTTACATTATTTGAACTTTAAGGAAAGTTCGAAACTCTTGAAAAGTTTCCA
* *
2528925 AAATTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAATAGTGA
195 AACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGA
* * * *
2528990 GTTTTTATATTTTTTTCAGAAAATTCCAACTTTGAAAATTGTTCTAAAGTGTTTGAATGTTATTT
260 GTTTTGATA-TTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TT
* * *
2529055 TTTTACATAATTTGAATTTAGGGAAG-TTCGAAACTCTT
323 TTTGACATAATTTGAATTAAGGAAAGTTTCGAAACTCTT
2529093 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTT-CAAGTTTCAAAACTCTTGGTCAAAGC-TGA
1 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
* * ** * *
2529156 TTCAAATAGTGAGTTTTGATTTTTTTTTTTTAGAAATTCTAAC-TTGAAAATTGTTCTAAAGAGT
66 TTCAAATAGTGAGTTTTCATATTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAGT
* * *
2529220 TTGAAT-ATATTTTTTACA-TAGTTTGAACTTTAAGGAAAGTTTCAAAACTCATGAAAAGTTTTC
131 TTGAATGATATTTTTTACATTA-TTTGAACTTTAAGGAAAG-TTCGAAACTCTTGAAAAGTTTCC
2529283 AAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTG
194 AAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTG
* *
2529348 AGTTTTGATATTTTTTGAGAAACA-TCAAACTTTGAAAATTATTCTAAAGAGTTTGAATGATATT
259 AGTTTTGATATTTTTTGAGAAA-ATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATT
*
2529412 TTTGACATAATTTAAACTTCAAGGAAAGTTTCGAAACTCTT
323 TTTGACATAATTTGAA-TT-AAGGAAAGTTTCGAAACTCTT
*
2529453 GAAAAGTTTCCAAACTTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTTAAAGCTTG
1 GAAAAGTTTCCAAAC-TTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTG
2529518 ATTCAAATAGTGAGTTTTCATATTTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGA
65 ATTCAAATAGTGAGTTTTCATA-TTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGA
*
2529583 GTTTGAATGATATTTTTTACATTATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAGTTTC
129 GTTTGAATGATATTTTTTACATTATTTGAACTTTAAGGAAAG-TTCGAAACTCTTGAAAAGTTTC
*
2529648 CAAACTTTAAAGTATTATGTTTTTCCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGT
193 CAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGT
* * * *
2529713 GAGTTTTGATATTTTTTGAGAAAATTCTAACTTTTAAAATTGTTTTAAAGAGTTTGAATGATTTT
258 GAGTTTTGATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATT
* * *
2529778 TTTTACATAA--T---TT---G-AACTTT---AA----G
323 TTTGACATAATTTGAATTAAGGAAAGTTTCGAAACTCTT
* * *
2529801 GAAAA-TTTCAAAACTTTACAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAACTTGA
1 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
* * *
2529865 TTCAAATAGAGAGTTTTCATATTTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGT
66 TTCAAATAGTGAGTTTTCATATTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAGT
* * * *
2529930 TTTAATGATATTTTTGACATAATTTGAACTTTAAGGAAAATTTCGAAACTCTTGAAAAGTTTCCA
131 TTGAATGATATTTTTTACATTATTTGAACTTTAAGG-AAAGTTCGAAACTCTTGAAAAGTTTCCA
* * *
2529995 AAATTTAAAGTATTAAGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAATAGTGA
195 AACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGA
*
2530060 GTTTTGATATTTTTTTCAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTT
260 GTTTTGATA-TTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TT
* *
2530125 TTTTACATAATTTGAATTTTAAGGGAAGTTTCGAAACTCTT
323 TTTGACATAATTTGAA--TTAAGGAAAGTTTCGAAACTCTT
*
2530166 GAAAAGGTTT-CAAACTTTAAAGTATTATGTTTTTGAAAGTTTCAAAACTCTTGGTCAAAGCTTG
1 GAAAA-GTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTG
2530230 ATTCAAATAGTGAGTTTTCATA-TTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAG
65 ATTCAAATAGTGAGTTTTCATATTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAG
*
2530294 TTTGAATGATATTTTTTACATTATTTGAACTTTAATGAAAGTTCGAAACTC-TGAAAAGTTTCCA
130 TTTGAATGATATTTTTTACATTATTTGAACTTTAAGGAAAGTTCGAAACTCTTGAAAAGTTTCCA
*
2530358 AAC-TTAAAG---TATGTTTTTGCAAGTTTCAAAACTCTTGGTTAAA-CTTGATTCAAATAGTTG
195 AACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAG-TG
* *
2530418 -GTTTT-CTATATTTTT-AGAAAA-TCCAACTTCGAAAATTGTTCTAAAGAGTTTGAATGATATT
259 AGTTTTGATAT-TTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATT
* *
2530479 TTTGAGATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTT
323 TTTGACATAATTTGAA--TTAAGGAAAGTTTCGAAACTCTT
* * * * *
2530520 GAAAAGTTTCGAAACTTTAAAGTATTATGTTTTTGCATGTTTAAAAACTCTTGGTCAAACCTTGT
1 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
* * * * *
2530585 TTCAAATAGCGAGTTTTGATA--TTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAG-
66 TTCAAATAGTGAGTTTTCATATTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAGT
* * *
2530647 TTGAATGATATTTTTTTACATAATTTGAACTTTAATG-ATGTTC-AAACTCTTGAAAAGTTTCCA
131 TTGAATGATA-TTTTTTACATTATTTGAACTTTAAGGAAAGTTCGAAACTCTTGAAAAGTTTCCA
*
2530710 AACTTT-AAGT-TTATG-TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTAGATTC-AATAGTGA
195 AACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGA
* *
2530771 GTTTTCATATTTTTTGA-AAAA-TCCAAC-TTGAAAGTTGTTCTAAAGAGTTTGAATGATATTTT
260 GTTTTGATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTT
2530833 TGA
325 TGA
2530836 AACTCTCGAA
Statistics
Matches: 1574, Mismatches: 116, Indels: 112
0.87 0.06 0.06
Matches are distributed among these distances:
345 168 0.11
346 117 0.07
347 20 0.01
348 5 0.00
349 1 0.00
351 6 0.00
352 74 0.05
353 122 0.08
354 128 0.08
355 42 0.03
356 14 0.01
357 91 0.06
358 117 0.07
359 157 0.10
360 29 0.02
361 21 0.01
362 31 0.02
363 37 0.02
364 33 0.02
365 105 0.07
366 251 0.16
367 5 0.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (361 bp):
GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
TTCAAATAGTGAGTTTTCATATTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAGT
TTGAATGATATTTTTTACATTATTTGAACTTTAAGGAAAGTTCGAAACTCTTGAAAAGTTTCCAA
ACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAG
TTTTGATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
GACATAATTTGAATTAAGGAAAGTTTCGAAACTCTT
Found at i:2529827 original size:162 final size:163
Alignment explanation
Indices: 2529638--2530835 Score: 738
Period size: 183 Copynumber: 6.9 Consensus size: 163
2529628 CGAAACTCTT
* *
2529638 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTCCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
1 GAAAA-TTTCAAAACTTTAAAGTATTATGTTTTTCCAAGTTTCAAAACTCTTGGTCAAAACTTGA
* * * *
2529703 TTCAAATAGTGAGTTTTGATA-TTTTTTGAGAAAATTCTAACTTTTAAAATTGTTTTAAAGAGTT
65 TTCAAATAGAGAGTTTTCATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTT
* *
2529767 TGAATGATTTTTTTTACATAATTTGAACTTTAAG
130 TGAATGATATTTTTGACATAATTTGAACTTTAAG
* *
2529801 GAAAATTTCAAAACTTTACAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAACTTGAT
1 GAAAATTTCAAAACTTTAAAGTATTATGTTTTTCCAAGTTTCAAAACTCTTGGTCAAAACTTGAT
2529866 TCAAATAGAGAGTTTTCATATTTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTT
66 TCAAATAGAGAGTTTTCATA-TTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTT
*
2529931 TTAATGATATTTTTGACATAATTTGAACTTTAAG
130 TGAATGATATTTTTGACATAATTTGAACTTTAAG
* ** *
2529965 GAAAATTTCGAAACTCTTGAAAAGT-TTCCAAAATTTAAAGTAT-TAAGTTTTTGCAAGTTTCAA
1 GAAAATTTCAAAACT-TT--AAAGTATT---ATGTTT----T-TCCAAG--TTT-C-A-----AA
* ** * * * *
2530028 AACTCTTGGTCAAAGTTTGATTCAAATAGTGAGTTTTGATATTTTTTTCAGAAAATTCCAACTTT
46 AC-TCTTGGTCAAAACTTGATTCAAATAGAGAGTTTTCATATTTTTTTGAGAAAATTCTAACTTT
* *
2530093 GAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTTACATAATTTGAATTTTAAG
110 GAAAATTGTTCTAAAGAGTTTGAATGATA-TTTTTGACATAATTTGAACTTTAAG
* * * * ** ** **
2530148 GGAAGTTTCGAAACTCTTGAAAAGGTTTCAAACTTTAAAGTATTATGTTTTTGAAAGTTTCAAA-
1 GAAAATTTCAAAACT-TT--AAA-G--T---A---T----TA-TGT-TTTTCCAAGTTTCAAAAC
* * *** * *
2530212 ACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTCATATTTTTTTGAAAAAATTCTAACTTTG
48 TCT-TGGTCAAAA-CTTGATTCAAATAGAGAGTTTTCATATTTTTTTGAGAAAATTCTAACTTTG
* * * *
2530277 AAAATTGATCTAAAGAGTTTGAATGATATTTTTTACATTATTTGAACTTTAAT
111 AAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAG
* * * * *
2530330 GAAAGTTCGAAACTCTGAAAAGTTTCCAAACTTAAAGTATGTTTTTGCAAGTTTCAAAACTCTTG
1 GAAAATT------TC--AAAACTTT--AAA-GT--ATTATGTTTTTCCAAGTTTCAAAACTCTTG
* * * * *
2530395 GT-TAAACTTGATTCAAATAGTTG-GTTTTC-TATATTTTT-AGAAAA-TCCAACTTCGAAAATT
53 GTCAAAACTTGATTCAAATAG-AGAGTTTTCATATTTTTTTGAGAAAATTCTAACTTTGAAAATT
*
2530455 GTTCTAAAGAGTTTGAATGATATTTTTGAGATAATTTGAACTTTAAG
117 GTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAG
* * **** *
2530502 GAAAGTTTCAAAACTCTTGAAAAGTTTCGAAACTTTAAAGTATTATGTTTTTGCATGTTTAAAAA
1 GAAAATTTCAAAACT-TT--AAAG--T----A--TT-ATGT-TT-T-TCCAAG--T-TTCAAAA-
* * * * *
2530567 CTCTTGGTCAAACCTTGTTTCAAATAGCGAGTTTTGATA-TTTTTTGAGAAAATTCCAACTTTGA
47 CTCTTGGTCAAAACTTGATTCAAATAGAGAGTTTTCATATTTTTTTGAGAAAATTCTAACTTTGA
*
2530631 AAATTGTTCTAAAGAG-TTGAATGATATTTTTTTACATAATTTGAACTTTAATG
112 AAATTGTTCTAAAGAGTTTGAATGATA-TTTTTGACATAATTTGAACTTTAA-G
* * * * *
2530684 ATGTTCAAACTCTTGAAAAGTTTCCAAACTTTAAGTTTATG-TTTTGCAAGTTTCAAAACTCTTG
1 --G---AAAAT-TTCAAAACTTT--AAA--GT-A--TTATGTTTTTCCAAGTTTCAAAACTCTTG
* * * * *
2530748 GTCAAAGCTAGATTC-AATAGTGAGTTTTCATA-TTTTTTGA-AAAA-TCCAAC-TTGAAAGTTG
53 GTCAAAACTTGATTCAAATAGAGAGTTTTCATATTTTTTTGAGAAAATTCTAACTTTGAAAATTG
2530808 TTCTAAAGAGTTTGAATGATATTTTTGA
118 TTCTAAAGAGTTTGAATGATATTTTTGA
2530836 AACTCTCGAA
Statistics
Matches: 834, Mismatches: 117, Indels: 160
0.75 0.11 0.14
Matches are distributed among these distances:
162 74 0.09
163 5 0.01
164 91 0.11
165 7 0.01
166 5 0.01
167 4 0.00
168 3 0.00
169 4 0.00
170 1 0.00
171 28 0.03
172 81 0.10
173 14 0.02
174 34 0.04
175 41 0.05
176 13 0.02
177 21 0.03
178 13 0.02
179 29 0.03
180 19 0.02
181 52 0.06
182 86 0.10
183 156 0.19
184 7 0.01
186 4 0.00
187 11 0.01
188 9 0.01
189 5 0.01
190 6 0.01
191 1 0.00
192 3 0.00
193 1 0.00
194 1 0.00
195 2 0.00
196 2 0.00
197 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.41
Consensus pattern (163 bp):
GAAAATTTCAAAACTTTAAAGTATTATGTTTTTCCAAGTTTCAAAACTCTTGGTCAAAACTTGAT
TCAAATAGAGAGTTTTCATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTT
GAATGATATTTTTGACATAATTTGAACTTTAAG
Found at i:2530171 original size:183 final size:182
Alignment explanation
Indices: 2528755--2529815 Score: 1531
Period size: 181 Copynumber: 5.9 Consensus size: 182
2528745 AAACTTTACT
* * * *
2528755 GTATTTTGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAACTTGATTCACATAGAGAGTTTTCATA
1 GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTCATA
* * * *
2528820 TTTTTTTTGAGAAAATTCTAACTTTG-AAATTATTCTAAAGAGTTTTAATGATA-TTTTGACATA
66 -TTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTACATA
2528883 A-TTGAACTTTAAGGAAAG-TTCGAAACTCTTGAAAAGTTTCCAAAATTTAAA
130 ATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAATTTAAA
* *
2528934 GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAATAGTGAGTTTTTATA
1 GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTCATA
* * *
2528999 TTTTTTTCAGAAAATTCCAACTTTGAAAATTGTTCTAAAGTGTTTGAATGTTATTTTTTTACATA
66 TTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTTTTACATA
* *
2529064 ATTTGAA-TTT-AGGGAAG-TTCGAAACTCTTGAAAAGTTTCCAAACTTTAAA
130 ATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAATTTAAA
*
2529114 GTATTATGTTTTT-CAAGTTTCAAAACTCTTGGTCAAAGC-TGATTCAAATAGTGAGTTTTGATT
1 GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTCA--
* * *
2529177 TTTTTTTTTTAG-AAATTCTAAC-TTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTTACAT
64 TATTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTACAT
* * * * *
2529239 AGTTTGAACTTTAAGGAAAGTTTCAAAACTCATGAAAAGTTTTCAAACTTTAAA
129 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAATTTAAA
*
2529293 GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATA
1 GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTCATA
* * *
2529358 -TTTTTTGAGAAACA-TCAAACTTTGAAAATTATTCTAAAGAGTTTGAATGATATTTTTGACATA
66 TTTTTTTGAGAAA-ATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTACATA
* * *
2529421 ATTTAAACTTCAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTTAAA
130 ATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA-ATTTAAA
*
2529475 GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTTAAAGCTTGATTCAAATAGTGAGTTTTCATA
1 GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTCATA
* * *
2529540 TTTTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAGTTTGAATGATATTTTTTACAT
66 --TTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTACAT
* * *
2529605 TATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAA
129 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAATTTAAA
* *
2529659 GTATTATGTTTTTCCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATA
1 GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTCATA
* * * *
2529724 -TTTTTTGAGAAAATTCTAACTTTTAAAATTGTTTTAAAGAGTTTGAATGATTTTTTTTACATAA
66 TTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTACATAA
* *
2529788 TTTGAACTTTAAGGAAAATTTCAAAACT
131 TTTGAACTTTAAGGAAAGTTTCGAAACT
2529816 TTACAGTATT
Statistics
Matches: 799, Mismatches: 63, Indels: 38
0.89 0.07 0.04
Matches are distributed among these distances:
176 17 0.02
177 5 0.01
178 84 0.11
179 167 0.21
180 114 0.14
181 171 0.21
182 74 0.09
184 69 0.09
185 98 0.12
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (182 bp):
GTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTCATA
TTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTACATAA
TTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAATTTAAA
Found at i:2530187 original size:183 final size:182
Alignment explanation
Indices: 2529801--2530833 Score: 1497
Period size: 183 Copynumber: 5.8 Consensus size: 182
2529791 GAACTTTAAG
* * *
2529801 GAAAA-TTTCAAAACTTTACAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAACTTGA
1 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
* *
2529865 TTCAAATAGAGAGTTTTCATATTTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGT
66 TTCAAATAGTGAGTTTTCATA-TTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGT
* * *
2529930 TTTAATGATATTTTTGACATAATTTGAACTTTAAGGAAAATTTCGAAACTCTT
130 TTGAATGATATTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTT
* * *
2529983 GAAAAGTTTCCAAAATTTAAAGTATTAAGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGA
1 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
* *
2530048 TTCAAATAGTGAGTTTTGATATTTTTTTCAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTT
66 TTCAAATAGTGAGTTTTCATATTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTT
* *
2530113 TGAATGATATTTTTTTACATAATTTGAATTTTAAGGGAAGTTTCGAAACTCTT
131 TGAATGATA-TTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTT
*
2530166 GAAAAGGTTT-CAAACTTTAAAGTATTATGTTTTTGAAAGTTTCAAAACTCTTGGTCAAAGCTTG
1 GAAAA-GTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTG
* * *
2530230 ATTCAAATAGTGAGTTTTCATATTTTTTTGAAAAAATTCTAACTTTGAAAATTGATCTAAAGAGT
65 ATTCAAATAGTGAGTTTTCATATTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGT
* *
2530295 TTGAATGATATTTTTTACATTATTTGAACTTTAATGAAAG-TTCGAAACTC-T
130 TTGAATGATATTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTT
*
2530346 GAAAAGTTTCCAAAC-TTAAAG---TATGTTTTTGCAAGTTTCAAAACTCTTGGTTAAA-CTTGA
1 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
* *
2530406 TTCAAATAGTTG-GTTTTC-TATATTTTT-AGAAAA-TCCAACTTCGAAAATTGTTCTAAAGAGT
66 TTCAAATAG-TGAGTTTTCATATTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGT
* * *
2530467 TTGAATGATATTTTTGAGATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTT
130 TTGAATGATATTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTT
* * * * *
2530520 GAAAAGTTTCGAAACTTTAAAGTATTATGTTTTTGCATGTTTAAAAACTCTTGGTCAAACCTTGT
1 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
* *
2530585 TTCAAATAGCGAGTTTTGATA-TTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAG-T
66 TTCAAATAGTGAGTTTTCATATTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTT
* *
2530648 TGAATGATATTTTTTTACATAATTTGAACTTTAATG-ATG-TTC-AAACTCTT
131 TGAATGATA-TTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTT
*
2530698 GAAAAGTTTCCAAACTTT-AAGT-TTATG-TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTAGA
1 GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
*
2530760 TTC-AATAGTGAGTTTTCATA-TTTTTTGA-AAAA-TCCAAC-TTGAAAGTTGTTCTAAAGAGTT
66 TTCAAATAGTGAGTTTTCATATTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTT
2530820 TGAATGATATTTTT
131 TGAATGATATTTTT
2530834 GAAACTCTCG
Statistics
Matches: 771, Mismatches: 62, Indels: 47
0.88 0.07 0.05
Matches are distributed among these distances:
171 24 0.03
172 77 0.10
173 18 0.02
174 46 0.06
175 59 0.08
176 39 0.05
177 4 0.01
178 57 0.07
179 36 0.05
180 31 0.04
181 59 0.08
182 81 0.11
183 236 0.31
184 4 0.01
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (182 bp):
GAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGA
TTCAAATAGTGAGTTTTCATATTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTT
TGAATGATATTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTT
Found at i:2530940 original size:148 final size:146
Alignment explanation
Indices: 2530690--2530984 Score: 463
Period size: 147 Copynumber: 2.0 Consensus size: 146
2530680 AATGATGTTC
*
2530690 AAACTCTTGAAAAGTTTCCAAACTTTAAGTTTATGTTTTGCAAGTTTCAAAACTCTTGGTCAAAG
1 AAACTCTCGAAAAGTTTCCAAACTTTAAGTTTATGTTTTGCAAGTTTCAAAACTCTTGGTCAAAG
*
2530755 CTAGATTCAATAGTGAGTTTTCATATTTTTTGAAAAA-TCCAAC-TTGAAAGTTGTTCTAAAGAG
66 CTAGATTCAATAGTGAGTTTTCATATTTTTTGAAAAATTCCAACTTTGAAAATTGTTCTAAAGAG
2530818 TTTGAATGATATTTTTG
131 TTTGAAT-ATATTTTTG
2530835 AAACTCTCGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTC-AAACTCTTGGTCA
1 AAACTCTCGAAAAGTTTCCAAACTTT-AAGT-TTATG-TTTTGCAAGTTTCAAAACTCTTGGTCA
* * *
2530899 AAGCTTGATTCAAATAGTGAGTTTTGATA-TTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTA
63 AAGCTAGATTC-AATAGTGAGTTTTCATATTTTTTGA-AAAATTCCAACTTTGAAAATTGTTCTA
2530963 AAGAGTTTGAATATATTTTTG
126 AAGAGTTTGAATATATTTTTG
2530984 A
1 A
2530985 CATAATTTGA
Statistics
Matches: 138, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
145 25 0.18
146 4 0.03
147 35 0.25
148 33 0.24
149 15 0.11
150 26 0.19
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (146 bp):
AAACTCTCGAAAAGTTTCCAAACTTTAAGTTTATGTTTTGCAAGTTTCAAAACTCTTGGTCAAAG
CTAGATTCAATAGTGAGTTTTCATATTTTTTGAAAAATTCCAACTTTGAAAATTGTTCTAAAGAG
TTTGAATATATTTTTG
Found at i:2531637 original size:181 final size:181
Alignment explanation
Indices: 2530834--2532019 Score: 1825
Period size: 183 Copynumber: 6.6 Consensus size: 181
2530824 TGATATTTTT
*
2530834 GAAACTCTCGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTC-AAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
2530898 AAAGCTTGATTCAAATAGTGAGTTTTGATA-TTTTTGAGAAAATTCTAACTTTGAAAATTGTTCT
66 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCT
*
2530962 AAAGAGTTTGAAT-ATATTTTTGACATAATTTGAACTTTAAGGAAAGTGTC
131 AAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
* * *
2531012 GTAACTCTTGAAAAGTTACCAAACTTTAAAGTAGTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
* *
2531077 AAAGCTTGATTCAAACAGTGAGTTTTGAT-TTTTTTTAGAAAATTCTAACTTTGAAAATTGTTCT
66 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCT
* * * * *
2531141 AAAGAGTTTGAATGATATATTTTTTACATTACTTGAACTTTAATGAAAGTTTT
131 AAAGAGTTTGAATG--ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
*
2531194 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGATTTTGCAAGTTTCAAAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
* ** * *
2531259 AAAGCTAGATTCAAATAGTGAGTTTTCTTATTTTTTGATAAAATTCTAACTTTTAAAATTGTTCT
66 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCT
*
2531324 AAAGAGTTTGAATGATATTTTTTTTACATAATTTGAACTTTAAGGAAAGTTTC
131 AAAGAGTTTGAATGATA--TTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
* * * *
2531377 AAAACTCTTGAATAGTTTCCAAAATTTAAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
* **
2531442 AAAGCTTAATTCAAATTTTGAGTTTTGATATTTTTTGAGAAAATTC-AACCTTTGAAAATTGTTC
66 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAA-CTTTGAAAATTGTTC
2531506 TAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
130 TAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
*
2531558 AAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
* *
2531623 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCCAACTTTAAAAATTGTTCT
66 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCT
** * * * ** *
2531688 ATGGAGTTTGAATGATATATTTTTTTACATTATTTGATCTTTAATTAATGTTTC
131 AAAGAGTTTGAATG--ATA-TTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
2531742 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
* * *
2531807 AAAGCTTGATTCAAATAGTGAGTTTTCAT-TTTTTTTA-AAAA-TC-CACTTTG-AAATTGTTCT
66 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCT
*
2531867 AAAGAGTTTGAATGATATTTTTGAGATAATTTGAACTTTAAGGAAAGTTTC
131 AAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
*
2531918 GAACCTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
*
2531983 AAAGCTTGATTCAAATAGAGAGTTTAATGATATTTTT
66 AAAGCTTGATTCAAATAGTGAGTTT--TGATATTTTT
2532020 GACATAATTT
Statistics
Matches: 919, Mismatches: 73, Indels: 31
0.90 0.07 0.03
Matches are distributed among these distances:
176 115 0.13
177 3 0.00
178 51 0.06
179 113 0.12
180 5 0.01
181 170 0.18
182 125 0.14
183 217 0.24
184 120 0.13
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (181 bp):
GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCT
AAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
Found at i:2531959 original size:360 final size:363
Alignment explanation
Indices: 2530834--2532019 Score: 1870
Period size: 365 Copynumber: 3.3 Consensus size: 363
2530824 TGATATTTTT
*
2530834 GAAACTCTCGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTC-AAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
*
2530898 AAAGCTTGATTCAAATAGTGAGTTTTGATA-TTTTTGAGAAAATTCTAACTTTGAAAATTGTTCT
66 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTAAAAATTGTTCT
* * *
2530962 AAAGAGTTTG-A--ATATA-TTTTTGACATAATTTGAACTTTAAGGAAAGTGTCGTAACTCTTGA
131 AAAGAGTTTGAATGATATATTTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGA
* *
2531023 AAAGTTACCAAACTTTAAAGTAGTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATT
196 AAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATT
*
2531088 CAAACAGTGAGTTTTGATTTTTTTTAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAA
261 CAAATAGTGAGTTTTGATTTTTTTTAGAAAATTC-AACTTTGAAAATTGTTCTAAAGAGTTTGAA
* * * * *
2531153 TGATATATTTTTTACATTACTTGAACTTTAATGAAAGTTTT
325 TG--ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
*
2531194 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGATTTTGCAAGTTTCAAAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
* ** * *
2531259 AAAGCTAGATTCAAATAGTGAGTTTTCTTATTTTTTGATAAAATTCTAACTTTTAAAATTGTTCT
66 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTAAAAATTGTTCT
*
2531324 AAAGAGTTTGAATGATAT-TTTTTTTACATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGA
131 AAAGAGTTTGAATGATATATTTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGA
* * * *
2531388 ATAGTTTCCAAAATTTAAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATT
196 AAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATT
** *
2531453 CAAATTTTGAGTTTTGATATTTTTTGAGAAAATTCAACCTTTGAAAATTGTTCTAAAGAGTTTGA
261 CAAATAGTGAGTTTTGAT-TTTTTTTAGAAAATTCAA-CTTTGAAAATTGTTCTAAAGAGTTTGA
2531518 ATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
324 ATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
*
2531558 AAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
*
2531623 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCCAACTTTAAAAATTGTTCT
66 AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTAAAAATTGTTCT
** * * ** *
2531688 ATGGAGTTTGAATGATATATTTTTTTACATTATTTGATCTTTAATTAATGTTTCGAAACTCTTGA
131 AAAGAGTTTGAATGATATATTTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGA
2531753 AAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATT
196 AAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATT
* *
2531818 CAAATAGTGAGTTTTCATTTTTTTTA-AAAA-TCCACTTTG-AAATTGTTCTAAAGAGTTTGAAT
261 CAAATAGTGAGTTTTGATTTTTTTTAGAAAATTCAACTTTGAAAATTGTTCTAAAGAGTTTGAAT
*
2531880 GATATTTTTGAGATAATTTGAACTTTAAGGAAAGTTTC
326 GATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
*
2531918 GAACCTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
1 GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
*
2531983 AAAGCTTGATTCAAATAGAGAGTTTAATGATATTTTT
66 AAAGCTTGATTCAAATAGTGAGTTT--TGATATTTTT
2532020 GACATAATTT
Statistics
Matches: 760, Mismatches: 55, Indels: 20
0.91 0.07 0.02
Matches are distributed among these distances:
360 197 0.26
361 44 0.06
362 55 0.07
363 5 0.01
364 177 0.23
365 237 0.31
366 45 0.06
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (363 bp):
GAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC
AAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAACTTTAAAAATTGTTCT
AAAGAGTTTGAATGATATATTTTTTTACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGA
AAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATT
CAAATAGTGAGTTTTGATTTTTTTTAGAAAATTCAACTTTGAAAATTGTTCTAAAGAGTTTGAAT
GATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTC
Found at i:2532037 original size:131 final size:131
Alignment explanation
Indices: 2531869--2532148 Score: 483
Period size: 131 Copynumber: 2.1 Consensus size: 131
2531859 ATTGTTCTAA
* *
2531869 AGAGTTTGAATGATATTTTTGAGATAATTTGAACTTTAAGGAAAGTTTCGAACCTCTTGAAAAGT
1 AGAGTTT-AATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT
* *
2531934 TTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAAT
65 TTCCAAAATTTAAAGTATTAAGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAAT
2531999 AG
130 AG
2532001 AGAGTTTAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTT
1 AGAGTTTAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTT
*
2532066 TCCAAAATTTAAAGTATTAAGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAATA
66 TCCAAAATTTAAAGTATTAAGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATA
2532131 G
131 G
*
2532132 TGAGTTT--TGATATTTTT
1 AGAGTTTAATGATATTTTT
2532149 TTTCAGAAAA
Statistics
Matches: 142, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
129 10 0.07
131 125 0.88
132 7 0.05
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (131 bp):
AGAGTTTAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTT
TCCAAAATTTAAAGTATTAAGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATA
G
Found at i:2532698 original size:183 final size:182
Alignment explanation
Indices: 2532001--2533595 Score: 2472
Period size: 183 Copynumber: 8.8 Consensus size: 182
2531991 ATTCAAATAG
2532001 AGAGTTT-AATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT
1 AGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT
* * *
2532065 TTCCAAAATTTAAAGTATTAAGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAAT
66 TTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAAT
* *
2532130 AGTGAGTTTTGATATTTTTTTTCAGAAAATTCCAACTTTGAAAATTGTTCTAA
131 AGTGAGTTTTGATA-TTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
* * *
2532183 AGAGTTTGAATGATATTTTTTTACATAATTTGAATTTTAAGGGAAGTTTCGAAACTCTTGAAAAG
1 AGAGTTTGAATGATA-TTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAG
*
2532248 TTTTCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAA
65 TTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAA
2532313 TAGTGAGTTTTGATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
130 TAGTGAGTTTTGATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
*
2532365 AGAGTTTGAAT-ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAATTCTTGAAAAGT
1 AGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT
*
2532429 TTCCAAACTTTTAAAGTATTATGTTTTTGCAAGTTTCAAAATTCTTGGTCAAAGCTTGATTCAAA
66 TTCCAAAC-TTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAA
* * * * * *
2532494 TTGAGAGTTTTCATATTTTTTTGAAAAAATACTAACTTTGAAAATTGATCTAA
130 TAGTGAGTTTTGATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
* * * * *
2532547 AGAGTTTGAATGATATTTTTGAGATAATTT-TACATTTAAGGAAAGTGTCGAAACACTTAAAAAG
1 AGAGTTTGAATGATATTTTTGACATAATTTGAAC-TTTAAGGAAAGTTTCGAAACTCTTGAAAAG
** *
2532611 TTTCCAAACTTTAAAGTATTATGTTTTCACAAGTTTCAAAACTCTTGGTCAAAGATTGATTCAAA
65 TTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAA
* *
2532676 TAGTGAGTTTTGATATTTTTTTTAGAAAATTCCAACTTTGAAAATTGTTCTAA
130 TAGTGAGTTTTGATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
2532729 AGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT
1 AGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT
* * * *
2532794 TTCCAAACTTTAAAGT-TT-TTTTTTTGCATGTTTAAAAACTCTTGGTCAAAGCTTGATTCAAAG
66 TTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAAT
* *
2532857 AGTGAGTTTTGATA-TTTTTTGAGAAAATTATAACTTTTAAAATTGTTCTAA
131 AGTGAGTTTTGATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
* * * *
2532908 AAAGTTTGAATGATATTTTTTTACATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAATAG
1 AGAGTTTGAATGATA-TTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAG
* *
2532973 TTTCCAAACTTTAAAGTGTTATGTTTTTGCAAGTTTCAAAACTATTGGTCAAAGCTTGATTCAAA
65 TTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAA
* *
2533038 TAGTGAGTTTTGATTTTTTTTTTTGAGAAACTTCTAACTTTGAAAATTGTTCTAA
130 TAGTGAGTTTTGA--TATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
* *
2533093 AGAATTTGAATTATA-TTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT
1 AGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT
* *
2533157 TTCCAAACTTTAAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAAT
66 TTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAAT
* *
2533222 AGTGAGTTTTAATA-TTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAA
131 AGTGAGTTTTGATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
* * * *
2533273 AGAGTTTGAATGATATATTTTTTACATTATTTGAACTTTAATGAAAGTTTCGAAACTCTTCAAAA
1 AGAGTTTGAATG--ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAA
*
2533338 GTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTTAAAGCTTGATTCAA
64 GTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAA
* * *
2533403 ATAGTGAGTTTTAATATTTTTTT-AGAAAATTCGAACTTTGAAAATTATTCTAA
129 ATAGTGAGTTTTGATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
* * * * *
2533456 AGAGTTTGAATGATATATTTTTTACATTATTTGAACTTTAATGAAAGTTTCAAAACTCTTCAAAA
1 AGAGTTTGAATG--ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAA
*
2533521 GTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTTAAAGCTTGATTCAA
64 GTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAA
2533586 ATAGTGAGTT
129 ATAGTGAGTT
2533596 CACTACAGCA
Statistics
Matches: 1302, Mismatches: 94, Indels: 33
0.91 0.07 0.02
Matches are distributed among these distances:
179 47 0.04
180 213 0.16
181 75 0.06
182 325 0.25
183 467 0.36
184 129 0.10
185 46 0.04
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.42
Consensus pattern (182 bp):
AGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGT
TTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAAT
AGTGAGTTTTGATATTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAA
Found at i:2533060 original size:856 final size:841
Alignment explanation
Indices: 2531173--2532893 Score: 2330
Period size: 856 Copynumber: 2.0 Consensus size: 841
2531163 TTTACATTAC
** * * * *
2531173 TTGAACTTTAATGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGATTTTG
1 TTGAACTTTAA-GAAAGTTTAAAAACTCTTGAAAAGTTTACAAAATTTAAACTATTA--A--GTG
* ** * * **
2531238 CAAGTTTCAAAACTCTTGGTCAAAGCTAGATTCAAATAGTGAGTTTTCTTAT-TTTTTG-ATAAA
61 AAAGTTTCAAAACTCTTGG-CAAAG-TTTATCCAAATAGTAAG--TTGATATGTTTTTGCA-AAA
* * *
2531301 ATTCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTTTACATAATTTGAACTTTA
121 ATTCAAACTTTGAAAATTGTTCAAAAGAGTTTG-AT--T-TTTTTTTTACATAATTTGAACTTTA
* *
2531366 AGGAAAGTTTCAAAACTCTTGAATAGTTTCCAAAATTTAAATTATTATGTTTTTGCAAGTTTCAA
182 AGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAAATTTAAAGTATTATGTTTTTGCAAGTTTCAA
**
2531431 AACTCTTGGTCAAAGCTTAATTCAAATTTTGAGTTTTGATATTTTTTGAGAAAATTCAACCTTTG
247 AACTCTTGGTCAAAGCTTAATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCAACCTTTG
2531496 AAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCAAA
312 AAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCAAA
2531561 ACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAA
377 ACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAA
* * * * * **
2531626 GCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCCAACTTTAAAAATTGTTCTATG
442 GCTTGATTCAAATAGAGAGTTTTCATATTTTTTGAAAAAATACCAACTTTAAAAATTGATCTAAA
* * ** * * * *
2531691 GAGTTTGAATGATATATTTTTTTACATTATTTGATCTTTAATTAATGTTTCGAAACTCTTGAAAA
507 GAGTTTGAATGA-ATATTTTTTGACATAATTTGATCTTTAAGGAAAGTGTCGAAACACTTAAAAA
** *
2531756 GTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAA
571 GTTTCCAAACTTTAAAGTATTATGTTTTCACAAGTTTCAAAACTCTTGGTCAAAGATTGATTCAA
2531821 ATAGTGAGTTTTCATTTTTTTTAAAAATCCACTTTGAAATTGTTCTAAAGAGTTTGAATGATATT
636 ATAGTGAGTTTTCATTTTTTTTAAAAATCCACTTTGAAATTGTTCTAAAGAGTTTGAATGATATT
* *
2531886 TTTGAGATAATTTGAACTTTAAGGAAAGTTTCGAACCTCTTGAAAAGTTTCCAAACTTTAAAGTA
701 TTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTA
* *
2531951 TTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGAGAGTTTAATGATAT
766 TTATGTTTTTGCAAGTTTAAAAACTCTTGGTCAAAGCTTGATTCAAAGAGAGAGTTT-ATGATAT
*
2532016 TTTTGACATAAT
830 TTTTGACAAAAT
** * *
2532028 TTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAATTTAAAGTATTAAGTTTTTG
1 TTGAACTTTAA-GAAAGTTTAAAAACTCTTGAAAAGTTTACAAAATTTAAACTATTAAG----TG
* * * * *
2532093 CAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAATAGTGAGTTTTGATATTTTTTTTCAGAAA
61 AAAGTTTCAAAACTCTTGG-CAAAGTTT-ATCCAAATAGTAAG--TTGATATGTTTTTGCA-AAA
* * * *
2532158 ATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTTACATAATTTGAATTTTAA
121 ATTCAAACTTTGAAAATTGTTCAAAAGAGTTTG-AT--TTTTTTTTTACATAATTTGAACTTTAA
* * * *
2532223 GGGAAGTTTCGAAACTCTTGAAAAGTTTTCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAA
183 GGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAAATTTAAAGTATTATGTTTTTGCAAGTTTCAAA
*
2532288 ACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCTAA-CTTTG
248 ACTCTTGGTCAAAGCTTAATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTC-AACCTTTG
*
2532352 AAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAA
312 AAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCAAA
* *
2532416 ATTCTTGAAAAGTTTCCAAACTTTTAAAGTATTATGTTTTTGCAAGTTTCAAAATTCTTGGTCAA
377 ACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAA
* * *
2532481 AGCTTGATTCAAATTGAGAGTTTTCATATTTTTTTGAAAAAATACTAACTTTGAAAATTGATCTA
441 AGCTTGATTCAAATAGAGAGTTTTCATA-TTTTTTGAAAAAATACCAACTTTAAAAATTGATCTA
* *
2532546 AAGAGTTTGAATG-ATA-TTTTTGAGATAATTTTA-CATTTAAGGAAAGTGTCGAAACACTTAAA
505 AAGAGTTTGAATGAATATTTTTTGACATAATTTGATC-TTTAAGGAAAGTGTCGAAACACTTAAA
2532608 AAGTTTCCAAACTTTAAAGTATTATGTTTTCACAAGTTTCAAAACTCTTGGTCAAAGATTGATTC
569 AAGTTTCCAAACTTTAAAGTATTATGTTTTCACAAGTTTCAAAACTCTTGGTCAAAGATTGATTC
*
2532673 AAATAGTGAGTTTTGATATTTTTTTTAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGA
634 AAATAGTGAGTTTT--CATTTTTTTTA-AAAA-TCC-ACTTTG-AAATTGTTCTAAAGAGTTTGA
2532738 ATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACT
693 ATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACT
* * *
2532803 TTAAAGT-TT-TTTTTTTGCATGTTTAAAAACTCTTGGTCAAAGCTTGATTCAAAGAGTGAGTTT
758 TTAAAGTATTATGTTTTTGCAAGTTTAAAAACTCTTGGTCAAAGCTTGATTCAAAGAGAGAGTTT
*
2532866 -TGATATTTTTTGAGAAAAT
823 ATGATA-TTTTTGACAAAAT
2532885 TAT-AACTTT
1 T-TGAACTTT
2532894 TAAAATTGTT
Statistics
Matches: 788, Mismatches: 59, Indels: 36
0.89 0.07 0.04
Matches are distributed among these distances:
853 2 0.00
854 111 0.14
855 164 0.21
856 252 0.32
857 107 0.14
858 53 0.07
859 8 0.01
860 91 0.12
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.41
Consensus pattern (841 bp):
TTGAACTTTAAGAAAGTTTAAAAACTCTTGAAAAGTTTACAAAATTTAAACTATTAAGTGAAAGT
TTCAAAACTCTTGGCAAAGTTTATCCAAATAGTAAGTTGATATGTTTTTGCAAAAATTCAAACTT
TGAAAATTGTTCAAAAGAGTTTGATTTTTTTTTTACATAATTTGAACTTTAAGGAAAGTTTCAAA
ACTCTTGAAAAGTTTCCAAAATTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAA
GCTTAATTCAAATAGTGAGTTTTGATATTTTTTGAGAAAATTCAACCTTTGAAAATTGTTCTAAA
GAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAAAAGTT
TCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATA
GAGAGTTTTCATATTTTTTGAAAAAATACCAACTTTAAAAATTGATCTAAAGAGTTTGAATGAAT
ATTTTTTGACATAATTTGATCTTTAAGGAAAGTGTCGAAACACTTAAAAAGTTTCCAAACTTTAA
AGTATTATGTTTTCACAAGTTTCAAAACTCTTGGTCAAAGATTGATTCAAATAGTGAGTTTTCAT
TTTTTTTAAAAATCCACTTTGAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGA
ACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAG
TTTAAAAACTCTTGGTCAAAGCTTGATTCAAAGAGAGAGTTTATGATATTTTTGACAAAAT
Found at i:2533703 original size:42 final size:41
Alignment explanation
Indices: 2533640--2533883 Score: 237
Period size: 42 Copynumber: 6.0 Consensus size: 41
2533630 AGTTTCAAAT
* *
2533640 CTTTAGTGGCGTTTTCAAAACAAACGCCGCTATATATTAGTA
1 CTTTAGTGGCGTTTT-TAAACAAACGCCGCTATATACTAGTA
*
2533682 CTTTAGTGGCGTTTTTTAAACAAACGCCGCTATAGACTAGTA
1 CTTTAGTGGCG-TTTTTAAACAAACGCCGCTATATACTAGTA
* * * *
2533724 CTTTTGTTGCGTTTTTATACAAACGCCGCTAAAGTACT-GTA
1 CTTTAGTGGCGTTTTTAAACAAACGCCGCTATA-TACTAGTA
** *
2533765 CTTTAGTGGCGTTTTTAAAC-AACGCCTTTATAGACTAGTA
1 CTTTAGTGGCGTTTTTAAACAAACGCCGCTATATACTAGTA
* * * *
2533805 CTTTCGTGGC--ATTTATACAAACGCCGCTAAAGTACT-GTA
1 CTTTAGTGGCGTTTTTAAACAAACGCCGCTATA-TACTAGTA
* * * * *
2533844 CTTTAGTGGCATTTTTTGAACAAACACTGCTATAGACTAG
1 CTTTAGTGGC-GTTTTTAAACAAACGCCGCTATATACTAG
2533884 GAATGACAGA
Statistics
Matches: 163, Mismatches: 30, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
38 6 0.04
39 24 0.15
40 24 0.15
41 43 0.26
42 62 0.38
43 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (41 bp):
CTTTAGTGGCGTTTTTAAACAAACGCCGCTATATACTAGTA
Found at i:2533837 original size:79 final size:82
Alignment explanation
Indices: 2533659--2533883 Score: 296
Period size: 79 Copynumber: 2.8 Consensus size: 82
2533649 CGTTTTCAAA
* *
2533659 ACAAACGCCGCTATA-TATTAGTACTTTAGTGGCGTTTTTTAAACAAACGCCGCTATAGACTAGT
1 ACAAACGCCGCTAAAGTACT-GTACTTTAGTGGCG-TTTTTAAACAAACGCCGCTATAGACTAGT
* **
2533723 ACTTTTGTTGCGTTTTTAT
64 ACTTTCGTTGCGCATTTAT
**
2533742 ACAAACGCCGCTAAAGTACTGTACTTTAGTGGCGTTTTTAAAC-AACGCCTTTATAGACTAGTAC
1 ACAAACGCCGCTAAAGTACTGTACTTTAGTGGCGTTTTTAAACAAACGCCGCTATAGACTAGTAC
2533806 TTTCG-TG-GCATTTAT
66 TTTCGTTGCGCATTTAT
* * * *
2533821 ACAAACGCCGCTAAAGTACTGTACTTTAGTGGCATTTTTTGAACAAACACTGCTATAGACTAG
1 ACAAACGCCGCTAAAGTACTGTACTTTAGTGGC-GTTTTTAAACAAACGCCGCTATAGACTAG
2533884 GAATGACAGA
Statistics
Matches: 126, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
79 39 0.31
80 10 0.08
81 37 0.29
82 9 0.07
83 28 0.22
84 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (82 bp):
ACAAACGCCGCTAAAGTACTGTACTTTAGTGGCGTTTTTAAACAAACGCCGCTATAGACTAGTAC
TTTCGTTGCGCATTTAT
Found at i:2533845 original size:39 final size:39
Alignment explanation
Indices: 2533659--2533857 Score: 168
Period size: 39 Copynumber: 4.9 Consensus size: 39
2533649 CGTTTTCAAA
* * * * *
2533659 ACAAACGCCGCTATATATTAGTACTTTAGTGGCGTTTTTTAA
1 ACAAACGCCGCTAAAGACTAGTACTTTAGTGGC---ATTTAT
* * **
2533701 ACAAACGCCGCTATAGACTAGTACTTTTGTTGCGTTTTTAT
1 ACAAACGCCGCTAAAGACTAGTACTTTAG-TG-GCATTTAT
* *
2533742 ACAAACGCCGCTAAAGTACT-GTACTTTAGTGGCGTTTTT
1 ACAAACGCCGCTAAAG-ACTAGTACTTTAGTGGCATTTAT
* ** * *
2533781 AAACAACGCCTTTATAGACTAGTACTTTCGTGGCATTTAT
1 ACA-AACGCCGCTAAAGACTAGTACTTTAGTGGCATTTAT
2533821 ACAAACGCCGCTAAAGTACT-GTACTTTAGTGGCATTT
1 ACAAACGCCGCTAAAG-ACTAGTACTTTAGTGGCATTT
2533858 TTTGAACAAA
Statistics
Matches: 129, Mismatches: 22, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
39 36 0.28
40 33 0.26
41 28 0.22
42 29 0.22
43 2 0.02
44 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (39 bp):
ACAAACGCCGCTAAAGACTAGTACTTTAGTGGCATTTAT
Found at i:2536689 original size:16 final size:16
Alignment explanation
Indices: 2536668--2536735 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
2536658 TTTGGAACCG
2536668 TTGGAAATTGTGATGT
1 TTGGAAATTGTGATGT
2536684 TTGGAAA-TGTTGGATG-
1 TTGGAAATTG-T-GATGT
*
2536700 -AGGTAAATTGTGA--T
1 TTGG-AAATTGTGATGT
*
2536714 ATGGAAATTGTGATGT
1 TTGGAAATTGTGATGT
2536730 TTGGAA
1 TTGGAA
2536736 CTGTTGGTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
14 9 0.22
15 8 0.20
16 18 0.44
17 6 0.15
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.38
Consensus pattern (16 bp):
TTGGAAATTGTGATGT
Found at i:2538098 original size:21 final size:21
Alignment explanation
Indices: 2538074--2538132 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
2538064 TGATTTATTA
**
2538074 TTATGGATTTCATTTTTCTTG
1 TTATGGATTTCAAGTTTCTTG
* *
2538095 TTATGGATTTTAAGTTTGTTG
1 TTATGGATTTCAAGTTTCTTG
* *
2538116 TTATGGATGTAAAGTTT
1 TTATGGATTTCAAGTTT
2538133 ATTGGAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.56
Consensus pattern (21 bp):
TTATGGATTTCAAGTTTCTTG
Found at i:2538348 original size:43 final size:42
Alignment explanation
Indices: 2538301--2538553 Score: 242
Period size: 43 Copynumber: 5.9 Consensus size: 42
2538291 CGTTTATTCT
* ** * *
2538301 AAAAAACGCCGCTATATACT-AGATTTTTTGCGGTGTTTGT-G
1 AAAAAACGCCGCTAAAT-CTAAGACCTATTGCGGCGTTTGTGG
* *
2538342 AGAAAAATGCCGTTAAATCTCAAGACCTATTGCGGCGTTTGTGG
1 A-AAAAACGCCGCTAAATCT-AAGACCTATTGCGGCGTTTGTGG
*
2538386 AAAAAACGCCGCTAAATCTCAACACCTATTGCGGCGTTTGTGG
1 AAAAAACGCCGCTAAATCT-AAGACCTATTGCGGCGTTTGTGG
* *
2538429 GAAAAACGCCGCTAAATCTCAACACCTATTGCGGCGTTTGTGG
1 AAAAAACGCCGCTAAATCT-AAGACCTATTGCGGCGTTTGTGG
** * * * *
2538472 GTAAAACGTCGCTAAATCGGAACACCTATTGCAGCGTTTGTTGG
1 AAAAAACGCCGCTAAATC-TAAGACCTATTGCGGCGTTTG-TGG
* * *
2538516 -AAAAACGCCACTAAATACCAACACCTATTGCGGCGTTT
1 AAAAAACGCCGCTAAAT-CTAAGACCTATTGCGGCGTTT
2538554 TTTGTTACCA
Statistics
Matches: 185, Mismatches: 20, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
41 3 0.02
42 13 0.07
43 163 0.88
44 6 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (42 bp):
AAAAAACGCCGCTAAATCTAAGACCTATTGCGGCGTTTGTGG
Found at i:2538391 original size:86 final size:85
Alignment explanation
Indices: 2538328--2538553 Score: 303
Period size: 86 Copynumber: 2.6 Consensus size: 85
2538318 ACTAGATTTT
* * * *
2538328 TTGCGGTGTTTGTGAGAAAAATGCCGTTAAATCTCAAGACCTATTGCGGCGTTTGTGGAAAAAAC
1 TTGCGGCGTTTGTGAGAAAAACGCCGCTAAATCTCAACACCTATTGCGGCGTTTGTGGAAAAAAC
2538393 GCCGCTAAATCTCAACACCTA
66 GCCGCTAAATCT-AACACCTA
* **
2538414 TTGCGGCGTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGCGTTTGTGGGTAAAAC
1 TTGCGGCGTTTGTGAGAAAAACGCCGCTAAATCTCAACACCTATTGCGGCGTTTGTGGAAAAAAC
* *
2538479 GTCGCTAAATCGGAACACCTA
66 GCCGCTAAATC-TAACACCTA
* *
2538500 TTGCAGCGTTTGTTG-GAAAAACGCCACTAAATAC-CAACACCTATTGCGGCGTTT
1 TTGCGGCGTTTG-TGAGAAAAACGCCGCTAAAT-CTCAACACCTATTGCGGCGTTT
2538554 TTTGTTACCA
Statistics
Matches: 126, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
86 123 0.98
87 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (85 bp):
TTGCGGCGTTTGTGAGAAAAACGCCGCTAAATCTCAACACCTATTGCGGCGTTTGTGGAAAAAAC
GCCGCTAAATCTAACACCTA
Found at i:2538731 original size:18 final size:19
Alignment explanation
Indices: 2538694--2538732 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
2538684 TGCGGCGCTT
*
2538694 AAAAACGCCGCTATAGGTA
1 AAAAACGCCGCTAAAGGTA
*
2538713 AAAAACGCCGC-AAATGTA
1 AAAAACGCCGCTAAAGGTA
2538731 AA
1 AA
2538733 GTTTTGCTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.49, C:0.21, G:0.18, T:0.13
Consensus pattern (19 bp):
AAAAACGCCGCTAAAGGTA
Found at i:2539361 original size:181 final size:181
Alignment explanation
Indices: 2538756--2546194 Score: 11559
Period size: 182 Copynumber: 40.9 Consensus size: 181
2538746 GCGTTTTCAT
* * * * * *
2538756 ATATTTTTTTAGAAAAATCCAACTTCGAAAATTGTTGTAAAGAGTTTGAATGATATTTTTGAGAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* *
2538821 AATTTGAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAATGTATTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
* * *
2538886 TTGCAAGTTTAAAAACTCTTGGTCAAAGCTTGTTTCAAATAGCGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * **
2538937 ATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATAATATATTTTTTTT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT--GATA-TTTTTGA
*
2539002 CATAATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
63 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
* *
2539067 TTTTTGCAAGTTTCAAAACTCTTGGTCGAAGCTTGATTCAAATAGTGAGTTTTC
128 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * * * *
2539121 AAATTTTTTTAGAAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAGAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* * *
2539186 AATTTAAAATTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTTAAAGTATTATGTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTT
*
2539251 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAACAGTGAGTTTTG
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
2539303 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* * *
2539367 AATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTTAAATTATTATGTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTT
2539432 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
*
2539484 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTACTAAAGAGTTTGAAT-ATATTTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* *
2539548 AATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
*
2539613 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAAGAGTGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* *
2539664 ATATTTTTTGAGAAAATTCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTTTTA
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA---TTTTTGA
* * * *
2539729 CATAATTTGAACTTTAAAGAAAGTTTCAAAACTCTTGAATAGTTTCCAAACATTAAAGTATTATG
63 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
*
2539794 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAATAGTGAGTTTTG
128 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
*
2539848 ATTTATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGGGTTTGAATGATA-TTTTGAC
1 A--TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAC
* *
2539912 ATAATTT-ACACTTTAAGGAAAGTTTCGAAACTCTTAAAAAGTTTCCAAACTTTAAATTATTATG
64 ATAATTTGA-ACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
*
2539976 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAATAGTGAGTTTTG
128 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
*
2540030 ATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* *
2540095 AATTTGAACTTTAAAGAAAGTTTCGAAACTCTTAAAAAGTTTCCAAACTTTAAAGTATTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
* *
2540160 TTGCAAGTTTCAAAACTATTGGTCAAAGCTTGATTCATATAGTGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* *
2540211 ATATTTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATATTTTTTA
1 ATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG--ATATTTTTGA
* * *
2540276 CATTATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAAGTTTCCAAACTTTAAACTATTAT
63 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTG-AAAAGTTTCCAAACTTTAAAGTATTAT
* *
2540341 GTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTAGATTCAAATAGTGAGTTTTC
127 GTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * * *
2540396 ATATATTTTTTAGAAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAGA
1 ATAT-TTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* * *
2540461 TAATTTGAACTTTAAGGAAAGTTTGGAAACTCTTGAAAAGATTCCAAACTTTTAAAGTATTTTGT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGT
*
2540526 TTTTGCAAGATTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
129 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
2540579 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* * *
2540644 AATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAA-TTTAAAATATTACGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
* *
2540708 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGAGAGTTTTC
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * * *
2540759 ATATTTTTTTGGAAAAAAATCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTTT
1 ATA-TTTTTT-GAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA--TTTTTG
* *
2540824 ACATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAATAGTTTCCAAACTTTAAAGTATTAT
62 ACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTAT
2540889 GTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
127 GTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
*
2540944 ATTTTTTATTTGGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTTGA
1 A-TATTT-TTT-GAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGA
*
2541008 CATAATTCGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
63 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
*
2541073 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTC
128 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * * * *
2541127 ATATTTTTTTTATAAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAGA
1 ATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* * * *
2541192 TAATTCGAAATTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTTAAATTATTATGT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGT
*
2541257 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATATTGAGTTTTG
129 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
2541310 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* *
2541374 AATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
* *
2541439 TTTCATGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * *
2541490 ATTTATTTTTTTTAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATTATA-CTTTGA
1 A--TA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGA
*
2541554 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAATTATTATG
63 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
*
2541619 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAAT--TGAGTTTTG
128 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
2541671 ATATTTTTTGAGAAAATTC-AACCTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
1 ATATTTTTTGAGAAAATTCTAA-CTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* * *
2541735 TAATTTGAACTTTAAAGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTTTGTT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
*
2541800 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATCCAAATAGTGAGTTTTG
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * *
2541852 ATTTTTTTTTTTGTGAAAATTCTAACTTTGAAAATTATTCTAAAGAGTTTGAATGATATTTTTGA
1 A---TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGA
* *
2541917 GATAATTTGAACTTTAAGGAAAGTTTCGAAGCTCTTGAAAAGTTTCCAAACTTTTAAAGTATTAT
63 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTAT
*
2541982 GTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGATTTTTG
127 GTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
2542037 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-ATA-TTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* * *
2542100 AATTTGAACTTTAAGGAAAGTGTCGTAACTCTTGAAAAGTTTCCAAACTTTAAAGTAGTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
* * * *
2542165 TTGCAAGTTTTAAAACTCTTTGTCAAAGCTTGATTTAAATATTGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* *
2542216 ATATTTTTTAAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATATTTTTTAC
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG--ATATTTTTGAC
* *
2542281 ATTATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGT
64 ATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGT
* *
2542346 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTAGATTCAAATAGTGAGTTTTC
129 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * * * *
2542399 TTATTTTTTTTAGAAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAGA
1 ATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
*
2542464 TAATTTGAACTTTAAGGAAAGTTTCGAAATTCTTGAAAAGTTTCCAAACTTTTAAAGTATTATGT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGT
* * *
2542529 TTTTGCAAGTTTCAAAATTCTTGGTCAAAGCTTGATTCAAATAGAGAGTTTTC
129 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * *
2542582 ATATTTTTTTGAAAAAATACTAACTTTGAAAATTGATCTAAAGAGTTTGAATGATATTTTTGACA
1 ATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* * * * * *
2542647 TTATTT-TACATTTAATGAAAGTGTCGAAACTCTTAAAAAGTTTTCAAACTTTAAAGTATTATGT
65 TAATTTGAAC-TTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGT
** * *
2542711 TTTCACAAGTTTCAAAACTCTTGGTCAAAGATTGATTCATATAGTGAGTTTTG
129 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * *
2542764 ATATTTTTTTTAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTCACA
1 ATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* * *
2542829 TAATTTGAACTTTAAGAAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTGTGTT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
*
2542894 TTTGTAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* *
2542946 ATTTTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATTATA-TTTTGACA
1 A-TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* *
2543010 TAATTTGAACATTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAATTATTATGTT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
* * *
2543075 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAATAGTTAGTTTTA
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* *
2543127 ATATTTTTTGAG-AAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATATTTTTTAC
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG--ATATTTTTGAC
* * * *
2543191 ATTATTTGAACTTTAATGAAAGTTTCTAAACTCTTCAAAAGTTTCCAAACTTTAAAGTATTATGT
64 ATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGT
* *
2543256 TTTTGCAAGTTTCAAAACTCTTGGTTAAAGCTTGATTCAAATAGTGAGTTTTCAT
129 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTT--G
* * * * *
2543311 ATATTTTTTTAGAAAAATCCAACTTCGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAGAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* * *
2543376 AATTTGAACTTTAAGGAATGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAATGTATTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
* * *
2543441 TTGCAAGTTTAAAAACTCTTGGTCAAAGCTTGTTTCAAATAGCGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * * * **
2543492 ATATTTTTTGAGAAAATTCCAACTTTAAAAATTGTTCTTAAGAGTTTGAATAATATTTTTTTTCA
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTTTGACA
* *
2543557 TAATTTGAACTATAATGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
*
2543622 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTC
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * * *
2543674 ATATTTTTTTAGAAAACTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAGAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* * * *
2543739 AATTTAAAATTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTTAAATTATTATGTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTT
2543804 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
2543856 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* * *
2543920 AATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTTAAATTATTATGTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTT
2543985 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
2544037 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* *
2544101 AATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
* *
2544166 TTGCAAGATTCAAAACTCTTGGTCAAAGCTTGATTCAAAGAGTGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* *
2544217 ATATTTTTTGAGAAAATTCTAACATTT-AAAATTGTTCTAAAGTGTTTGAATGATATTTTTTTTA
1 ATATTTTTTGAGAAAATTCTAAC-TTTGAAAATTGTTCTAAAGAGTTTGAATGATA--TTTTTGA
* * *
2544281 CATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAATAGTTTCCAAACATTAAAGTATTATG
63 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
*
2544346 TTTTTGCAAGTTTCAAAACTCTTGGTC-AAGTTTGATTC-----GTGAG-TTTG
128 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * *
2544393 ATTTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGGGTTTGATTGATATTTTT-ACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* * * *
2544457 AATTTAAACTTTAAGGAAAATTTCGAAACTCTTAAAAAGTTTCCAAACTTTAAATTATTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
*
2544522 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAATAGTGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
*
2544573 ATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
*
2544638 AATTTGAACTTTAAAGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
*
2544703 TTGCAAGTTTCAAAACTATTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * * *
2544754 ATATTTTTTTTAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAACGATATATTTTTTA
1 ATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG--ATATTTTTGA
* * *
2544819 CATTATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAAGTTTCCAAACTTTAAACTATTAT
63 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTG-AAAAGTTTCCAAACTTTAAAGTATTAT
* * *
2544884 GTTTTTGTAAGTTTCAAAACTCTTGGTCAAAGCTAGATTCAAATAGTGAGTTTTC
127 GTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * * * *
2544939 ATAGTTTTTTTTAGAAAAATCCAACTTTCAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAG
1 ATA--TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAC
* * * *
2545004 ATAATTTGAGCTTTAAGGAAAATTTGGAAACTCTTGAAAAGTTTCCAAACTTTTAAAGTATTTTG
64 ATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATG
2545069 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
128 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
*
2545123 ATATTTTTTGAGAAAATTTCTAACTTTGTAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACA
1 ATATTTTTTGAGAAAA-TTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* *
2545187 TAATTTGAACTTTAAGGAAAGTGTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTACGTT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
* *
2545252 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGAGAGTTTTC
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* *
2545304 ATATTTTTTTGGAAAAAATTCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTTT
1 ATA-TTTTTT-GAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA---TTTTT
* * *
2545369 TACATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAATAGTTTCCAAACTTTAAAGTATTA
61 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTA
*
2545434 TGTTTTTGCAAGTTTCAAAACTCTTGGTAAAAGCTTGATTCAAATAGTGAGTTTTG
126 TGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* *
2545490 ATTTTTTTTGGAGAAAATTCTAACATTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTTGACA
1 ATATTTTTT-GAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
2545554 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
* *
2545619 TTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAATAGTGAGTTTTC
130 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * *
2545671 ATATTTTTTTTAGAAAA-TCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTTGAGA
1 ATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* * * * *
2545734 TAATTCGAAATTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTTATATTATTATGT
65 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGT
*
2545799 TTTTGCAAGTTTC-AAACTC-TGGTCAAAGCTTGATTCAAATATTGAGTTTTG
129 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
2545850 ATA-TTTTTGAGAAAATTCTAAC-TTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACAT
1 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* *
2545912 AATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
66 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
*
2545977 TTGCATGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
131 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * *
2546028 ATTTTTTTTTTGTGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATTATA-TTTTGAC
1 A--TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAC
* * *
2546092 ATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTAAATTATTACGT
64 ATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGT
*
2546157 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTC
129 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTC
2546195 GATGAGGGAA
Statistics
Matches: 6691, Mismatches: 471, Indels: 191
0.91 0.06 0.03
Matches are distributed among these distances:
173 86 0.01
174 14 0.00
175 3 0.00
176 80 0.01
177 102 0.02
178 84 0.01
179 295 0.04
180 627 0.09
181 1400 0.21
182 1611 0.24
183 1001 0.15
184 692 0.10
185 429 0.06
186 267 0.04
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (181 bp):
ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
Found at i:2539871 original size:547 final size:544
Alignment explanation
Indices: 2538742--2546194 Score: 11526
Period size: 547 Copynumber: 13.7 Consensus size: 544
2538732 AGTTTTGCTG
* * * * * * *
2538742 TAGTGCGTTTTCATATATTTTTTTAGAAAAATCCAACTTCGAAAATTGTTGTAAAGAGTTTGAAT
1 TAGTGAGTTTTGAT-TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT
* *
2538807 GATATTTTTGAGATAATTTGAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTT
65 GATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTT
* * * *
2538872 AATGTATTATGTTTTTGCAAGTTTAAAAACTCTTGGTCAAAGCTTGTTTCAAATAGCGAGTTTTG
130 AAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
* * **
2538937 ATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATAATATATTTTTTTT
195 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT--GATA-TTTTTGA
*
2539002 CATAATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
257 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
* * * *
2539067 TTTTTGCAAGTTTCAAAACTCTTGGTCGAAGCTTGATTCAAATAGTGAGTTTTCAAATTTTTTTA
322 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGA
* * * * *
2539132 GAAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAGATAATTTAAAATT
387 GAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTT
*
2539197 TAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTTAAAGTATTATGTTTTTGCAAGTTT
452 TAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTTTTTGCAAGTTT
2539262 CAAAACTCTTGGTCAAAGCTTGATTCAAA
516 CAAAACTCTTGGTCAAAGCTTGATTCAAA
*
2539291 CAGTGAGTTTTGA-TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-
1 TAGTGAGTTTTGATTATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG
* *
2539354 ATATTTTTGACATAATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTT
66 ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTT
*
2539419 AAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
130 AAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
*
2539484 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTACTAAAGAGTTTGAAT-ATATTTTTGACAT
195 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* *
2539548 AATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
260 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTT
*
2539613 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAAGAGTGAGTTTTGATATTTTTTGAGAA
325 TTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAA
* *
2539678 AATTCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTTTTACATAATTTGAACTT
390 AATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA---TTTTTGACATAATTTGAACTT
* * * *
2539743 TAAAGAAAGTTTCAAAACTCTTGAATAGTTTCCAAACATTAAAGTATTATGTTTTTGCAAGTTTC
452 TAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTC
*
2539808 AAAACTCTTGGTCAAAGTTTGATTCAAA
517 AAAACTCTTGGTCAAAGCTTGATTCAAA
*
2539836 TAGTGAGTTTTGATTTATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGGGTTTGAAT
1 TAGTGAGTTTTGA-TTATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT
*
2539901 GATA-TTTTGACATAATTT-ACACTTTAAGGAAAGTTTCGAAACTCTTAAAAAGTTTCCAAACTT
65 GATATTTTTGACATAATTTGA-ACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTT
* *
2539964 TAAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAATAGTGAGTTTT
129 TAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTT
*
2540029 GATATTTTTTGAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
194 GATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* *
2540094 TAATTTGAACTTTAAAGAAAGTTTCGAAACTCTTAAAAAGTTTCCAAACTTTAAAGTATTATGTT
259 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
* *
2540159 TTTGCAAGTTTCAAAACTATTGGTCAAAGCTTGATTCATATAGTGAGTTTTGATATTTTTTTGAG
324 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATA-TTTTTTGAG
* * *
2540224 AAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATATTTTTTACATTATTTGAACT
388 AAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG--ATATTTTTGACATAATTTGAACT
* *
2540289 TTAATGAAAGTTTCGAAACTCTTGAAAAAGTTTCCAAACTTTAAACTATTATGTTTTTGCAAGTT
451 TTAAGGAAAGTTTCGAAACTCTTG-AAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTT
*
2540354 TCAAAACTCTTGGTCAAAGCTAGATTCAAA
515 TCAAAACTCTTGGTCAAAGCTTGATTCAAA
* * *
2540384 TAGTGAGTTTTCATATATTTTTT-AGAAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAAT
1 TAGTGAGTTTTGAT-TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT
* * *
2540448 GATATTTTTGAGATAATTTGAACTTTAAGGAAAGTTTGGAAACTCTTGAAAAGATTCCAAACTTT
65 GATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TT
* *
2540513 TAAAGTATTTTGTTTTTGCAAGATTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTT
129 TAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTT
2540578 GATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
194 GATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* * *
2540643 TAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAA-TTTAAAATATTACGTT
259 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
* *
2540707 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGAGAGTTTTCATATTTTTTTGGA
324 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATA-TTTTTT-GA
* * * *
2540772 AAAAAATCTAACTTTTAAAATTGTTCTAAAGAGTTTGAATGATATTTTTTTTACATAATTTGAAC
387 GAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA--TTTTTGACATAATTTGAAC
* *
2540837 TTTAAGGAAAGTTTCAAAACTCTTGAATAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTT
450 TTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTT
2540902 TCAAAACTCTTGGTCAAAGCTTGATTCAAA
515 TCAAAACTCTTGGTCAAAGCTTGATTCAAA
*
2540932 TAGTGAGTTTTGATTTTTTATTTGGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAA
1 TAGTGAGTTTTGATTATTT-TTT-GAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAA
*
2540997 TGATA-TTTTGACATAATTCGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTT
64 TGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTT
2541061 TAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTT
129 TAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTT
* * * * * *
2541126 CATATTTTTTTTATAAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAG
194 GATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAC
* * * *
2541191 ATAATTCGAAATTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTTAAATTATTATG
258 ATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATG
*
2541256 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATATTGAGTTTTGATATTTTTTGA
322 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGA
*
2541321 GAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACATAATTTAAACTT
387 GAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTT
* * *
2541385 TAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTTCATGTTTC
452 TAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTC
2541450 AAAACTCTTGGTCAAAGCTTGATTCAAA
517 AAAACTCTTGGTCAAAGCTTGATTCAAA
*
2541478 TAGTGAGTTTTGATTTATTTTTTTTAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAA
1 TAGTGAGTTTTGA-TTA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAA
* *
2541543 TTATA-CTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTT
64 TGATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTT
* *
2541607 TAAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAAT--TGAGTTTT
129 TAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTT
2541670 GATATTTTTTGAGAAAATTC-AACCTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAC
194 GATATTTTTTGAGAAAATTCTAA-CTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAC
* * *
2541734 ATAATTTGAACTTTAAAGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTTTGT
258 ATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGT
* *
2541799 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATCCAAATAGTGAGTTTTGATTTTTTTTTTT
323 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGA---TATTTTTT
* * *
2541864 GTGAAAATTCTAACTTTGAAAATTATTCTAAAGAGTTTGAATGATATTTTTGAGATAATTTGAAC
385 GAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAAC
*
2541929 TTTAAGGAAAGTTTCGAAGCTCTTGAAAAGTTTCCAAACTTTTAAAGTATTATGTTTTTGCAAGT
450 TTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTTTTTGCAAGT
2541994 TTCAAAACTCTTGGTCAAAGCTTGATTCAAA
514 TTCAAAACTCTTGGTCAAAGCTTGATTCAAA
*
2542025 TAGTGATTTTTGA-TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-
1 TAGTGAGTTTTGATTATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG
* *
2542088 ATA-TTTTGACATAATTTGAACTTTAAGGAAAGTGTCGTAACTCTTGAAAAGTTTCCAAACTTTA
66 ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTA
* * * * *
2542152 AAGTAGTATGTTTTTGCAAGTTTTAAAACTCTTTGTCAAAGCTTGATTTAAATATTGAGTTTTGA
131 AAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGA
* *
2542217 TATTTTTTAAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATATTTTTTACA
196 TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG--ATATTTTTGACA
* *
2542282 TTATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
259 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
* ** *
2542347 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTAGATTCAAATAGTGAGTTTTCTTATTTTTTTTAG
324 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATA-TTTTTTGAG
* * *
2542412 AAAAATCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAGATAATTTGAACTTT
388 AAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTT
*
2542477 AAGGAAAGTTTCGAAATTCTTGAAAAGTTTCCAAACTTTTAAAGTATTATGTTTTTGCAAGTTTC
453 AAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTTTTTGCAAGTTTC
*
2542542 AAAATTCTTGGTCAAAGCTTGATTCAAA
517 AAAACTCTTGGTCAAAGCTTGATTCAAA
* * * * *
2542570 TAGAGAGTTTTCA-TATTTTTTTGAAAAAATACTAACTTTGAAAATTGATCTAAAGAGTTTGAAT
1 TAGTGAGTTTTGATTA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT
* * * * * *
2542634 GATATTTTTGACATTATTT-TACATTTAATGAAAGTGTCGAAACTCTTAAAAAGTTTTCAAACTT
65 GATATTTTTGACATAATTTGAAC-TTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTT
** * *
2542698 TAAAGTATTATGTTTTCACAAGTTTCAAAACTCTTGGTCAAAGATTGATTCATATAGTGAGTTTT
129 TAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTT
* * *
2542763 GATATTTTTTTTAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTCAC
194 GATA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAC
* * *
2542828 ATAATTTGAACTTTAAGAAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTGTGT
258 ATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGT
* *
2542893 TTTTGTAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATTTTTTTTTGA
323 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGA-TATTTTTTGA
* *
2542958 GAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATTATA-TTTTGACATAATTTGAACAT
387 GAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTT
*
2543022 TAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAATTATTATGTTTTTGCAAGTTTC
452 TAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTC
*
2543087 AAAACTCTTGGTCAAAGCTTAATTCAAA
517 AAAACTCTTGGTCAAAGCTTGATTCAAA
* * *
2543115 TAGTTAGTTTT-AATATTTTTTGAG-AAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATG
1 TAGTGAGTTTTGATTATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG
* * * * *
2543178 ATATATTTTTTACATTATTTGAACTTTAATGAAAGTTTCTAAACTCTTCAAAAGTTTCCAAACTT
66 --ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTT
*
2543243 TAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTTAAAGCTTGATTCAAATAGTGAGTTTT
129 TAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTT
* * * * *
2543308 CATATATTTTTTTAGAAAAATCCAACTTCGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGA
194 --GATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGA
* * * *
2543373 GATAATTTGAACTTTAAGGAATGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAATGTATTATG
257 CATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATG
* * *
2543438 TTTTTGCAAGTTTAAAAACTCTTGGTCAAAGCTTGTTTCAAATAGCGAGTTTTGATATTTTTTGA
322 TTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGA
* * * * **
2543503 GAAAATTCCAACTTTAAAAATTGTTCTTAAGAGTTTGAATAATATTTTTTTTCATAATTTGAACT
387 GAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTTTGACATAATTTGAACT
* *
2543568 ATAATGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTT
451 TTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTT
2543633 CAAAACTCTTGGTCAAAGCTTGATTCAAA
516 CAAAACTCTTGGTCAAAGCTTGATTCAAA
* * * *
2543662 TAGTGAGTTTTCA-TATTTTTTTAGAAAACTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATG
1 TAGTGAGTTTTGATTATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG
* * * *
2543726 ATATTTTTGAGATAATTTAAAATTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTT
66 ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTT
*
2543791 AAATTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
130 AAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTG
2543856 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACAT
195 ATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACAT
* * *
2543920 AATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTTAAATTATTATGTT
260 AATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTT
2543985 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGA
324 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGA
*
2544050 AAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACATAATTTAAACTTTA
389 AAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTA
* *
2544114 AGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGATTCAA
454 AGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAA
2544179 AACTCTTGGTCAAAGCTTGATTCAAA
519 AACTCTTGGTCAAAGCTTGATTCAAA
* *
2544205 GAGTGAGTTTTGA-TATTTTTTGAGAAAATTCTAACATTT-AAAATTGTTCTAAAGTGTTTGAAT
1 TAGTGAGTTTTGATTATTTTTTGAGAAAATTCTAAC-TTTGAAAATTGTTCTAAAGAGTTTGAAT
* * * *
2544268 GATATTTTTTTTACATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAATAGTTTCCAAACA
65 GATA--TTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACT
*
2544333 TTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTC-AAGTTTGATTC-----GTGAG-TT
128 TTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTT
* * *
2544391 TGATTTTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGGGTTTGATTGATATTTTT-AC
193 TGATATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGAC
* * * *
2544455 ATAATTTAAACTTTAAGGAAAATTTCGAAACTCTTAAAAAGTTTCCAAACTTTAAATTATTATGT
258 ATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGT
*
2544520 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTCAAATAGTGAGTTTTGATATTTTTTGAG
323 TTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAG
*
2544585 AAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTT
388 AAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTT
*
2544650 AAAGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCA
453 AAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCA
*
2544715 AAACTATTGGTCAAAGCTTGATTCAAA
518 AAACTCTTGGTCAAAGCTTGATTCAAA
* * *
2544742 TAGTGAGTTTTGA-TATTTTTTTTAGAAAATTCCAACTTTGAAAATTGTTCTAAAGAGTTTGAAC
1 TAGTGAGTTTTGATTA-TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAAT
* * *
2544806 GATATATTTTTTACATTATTTGAACTTTAATGAAAGTTTCGAAACTCTTGAAAAAGTTTCCAAAC
65 G--ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTG-AAAAGTTTCCAAAC
* * *
2544871 TTTAAACTATTATGTTTTTGTAAGTTTCAAAACTCTTGGTCAAAGCTAGATTCAAATAGTGAGTT
127 TTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTT
* * * * *
2544936 TTCATAGTTTTTTTTAGAAAAATCCAACTTTCAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
192 TTGATA--TTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
* * * *
2545001 GAGATAATTTGAGCTTTAAGGAAAATTTGGAAACTCTTGAAAAGTTTCCAAACTTTTAAAGTATT
255 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATT
*
2545066 TTGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTT
319 ATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTT
*
2545131 TGAGAAAATTTCTAACTTTGTAAATTGTTCTAAAGAGTTTGAAT-ATATTTTTGACATAATTTGA
384 TGAGAAAA-TTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGA
* *
2545195 ACTTTAAGGAAAGTGTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTACGTTTTTGCAAG
448 ACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAG
2545260 TTTCAAAACTCTTGGTCAAAGCTTGATTCAAA
513 TTTCAAAACTCTTGGTCAAAGCTTGATTCAAA
* * * *
2545292 TAGAGAGTTTTCA-TATTTTTTTGGAAAAAATTCTAACTTTTAAAATTGTTCTAAAGAGTTTGAA
1 TAGTGAGTTTTGATTA-TTTTTT-GAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAA
* * *
2545356 TGATATTTTTTTTTACATAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAATAGTTTCCAAA
64 TGATA---TTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAA
*
2545421 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTAAAAGCTTGATTCAAATAGTGAGT
126 CTTTAAAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGT
* *
2545486 TTTGATTTTTTTTGGAGAAAATTCTAACATTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTT
191 TTTGATATTTTTT-GAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTT
2545550 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTA
255 GACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTA
* *
2545615 TGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGTTTGATTCAAATAGTGAGTTTTCATATTTTTT
320 TGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATA-TTTTT
* * * *
2545680 TTAGAAAA-TCCAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATA-TTTTGAGATAATTCGAA
384 TGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAA
* * * *
2545743 ATTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTTATATTATTATGTTTTTGCAAG
449 CTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAAC-TTTAAAGTATTATGTTTTTGCAAG
2545808 TTTC-AAACTC-TGGTCAAAGCTTGATTCAAA
513 TTTCAAAACTCTTGGTCAAAGCTTGATTCAAA
*
2545838 TATTGAGTTTTGA-TA-TTTTTGAGAAAATTCTAAC-TTGAAAATTGTTCTAAAGAGTTTGAAT-
1 TAGTGAGTTTTGATTATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG
* *
2545899 ATATTTTTGACATAATTTAAACTTTAAGGAAAGTTTTGAAACTCTTGAAAAGTTTCCAAACTTTA
66 ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTA
*
2545964 AAGTATTATGTTTTTGCATGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGA
131 AAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGA
* * *
2546029 TTTTTTTTTTGTGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATTATA-TTTTGACA
196 --TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACA
* * *
2546093 TAATTTGAACTTTAAGGAAAGTTTCAAAACTCTTGAAAAGTTTCCAAACTTTAAATTATTACGTT
259 TAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTT
*
2546158 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTAATTC
324 TTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTC
2546195 GATGAGGGAA
Statistics
Matches: 6384, Mismatches: 430, Indels: 190
0.91 0.06 0.03
Matches are distributed among these distances:
536 117 0.02
537 230 0.04
538 215 0.03
539 199 0.03
540 20 0.00
541 3 0.00
542 93 0.01
543 599 0.09
544 179 0.03
545 786 0.12
546 919 0.14
547 1124 0.18
548 712 0.11
549 625 0.10
550 307 0.05
551 215 0.03
552 41 0.01
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (544 bp):
TAGTGAGTTTTGATTATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATG
ATATTTTTGACATAATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTA
AAGTATTATGTTTTTGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGA
TATTTTTTGAGAAAATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATA
ATTTGAACTTTAAGGAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTT
TGCAAGTTTCAAAACTCTTGGTCAAAGCTTGATTCAAATAGTGAGTTTTGATATTTTTTGAGAAA
ATTCTAACTTTGAAAATTGTTCTAAAGAGTTTGAATGATATTTTTGACATAATTTGAACTTTAAG
GAAAGTTTCGAAACTCTTGAAAAGTTTCCAAACTTTAAAGTATTATGTTTTTGCAAGTTTCAAAA
CTCTTGGTCAAAGCTTGATTCAAA
Found at i:2539954 original size:19 final size:18
Alignment explanation
Indices: 2539930--2539967 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
2539920 CACTTTAAGG
*
2539930 AAAGTTTCGAAACTCTTAA
1 AAAGTTTCCAAACT-TTAA
2539949 AAAGTTTCCAAACTTTAA
1 AAAGTTTCCAAACTTTAA
2539967 A
1 A
2539968 TTATTATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (18 bp):
AAAGTTTCCAAACTTTAA
Found at i:2540135 original size:19 final size:18
Alignment explanation
Indices: 2540101--2540148 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 18
2540091 ACATAATTTG
*
2540101 AACTTTAAAGAAAGTTTCGA
1 AACTTT-AA-AAAGTTTCCA
2540121 AACTCTTAAAAAGTTTCCA
1 AACT-TTAAAAAGTTTCCA
2540140 AACTTTAAA
1 AACTTTAAA
2540149 GTATTATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 5 0.19
19 13 0.50
20 6 0.23
21 2 0.08
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (18 bp):
AACTTTAAAAAGTTTCCA
Found at i:2544494 original size:18 final size:18
Alignment explanation
Indices: 2544462--2544510 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
2544452 TACATAATTT
* *
2544462 AAACTTTAAGGAAAATTTCG
1 AAACTTTAA--AAAGTTTCC
2544482 AAACTCTTAAAAAGTTTCC
1 AAACT-TTAAAAAGTTTCC
2544501 AAACTTTAAA
1 AAACTTTAAA
2544511 TTATTATGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 5 0.19
19 12 0.46
20 5 0.19
21 4 0.15
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.31
Consensus pattern (18 bp):
AAACTTTAAAAAGTTTCC
Found at i:2546756 original size:24 final size:24
Alignment explanation
Indices: 2546724--2546782 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 24
2546714 CACAACATCA
* *
2546724 ACAATATAATTCACAATACTACA-C
1 ACAACATAATTCA-AATACCACACC
2546748 ACAACATAA-TCAAATACCACAGCC
1 ACAACATAATTCAAATACCACA-CC
2546772 ACAGACATAAT
1 ACA-ACATAAT
2546783 AAGTTGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 8 0.28
23 3 0.10
24 12 0.41
25 6 0.21
ACGTcount: A:0.51, C:0.27, G:0.03, T:0.19
Consensus pattern (24 bp):
ACAACATAATTCAAATACCACACC
Found at i:2560245 original size:24 final size:24
Alignment explanation
Indices: 2560218--2560265 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
2560208 GCATGACATG
2560218 GTACATAAATGTTTTATACATCAT
1 GTACATAAATGTTTTATACATCAT
*
2560242 GTACATAGATGTTTTATACATCAT
1 GTACATAAATGTTTTATACATCAT
2560266 CAGGAAGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (24 bp):
GTACATAAATGTTTTATACATCAT
Found at i:2561450 original size:21 final size:21
Alignment explanation
Indices: 2561424--2561466 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
2561414 CCTAATGCTC
2561424 AGCTAAATGTAGAGTCGTCTA
1 AGCTAAATGTAGAGTCGTCTA
2561445 AGCTAAATGTAGAGTCGTCTA
1 AGCTAAATGTAGAGTCGTCTA
2561466 A
1 A
2561467 TCTGAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (21 bp):
AGCTAAATGTAGAGTCGTCTA
Found at i:2567642 original size:24 final size:24
Alignment explanation
Indices: 2567615--2567710 Score: 174
Period size: 24 Copynumber: 4.0 Consensus size: 24
2567605 GCATGACATG
2567615 GTACATAGATGTTTTATACATCAT
1 GTACATAGATGTTTTATACATCAT
*
2567639 GTACATATATGTTTTATACATCAT
1 GTACATAGATGTTTTATACATCAT
2567663 GTACATAGATGTTTTATACATCAT
1 GTACATAGATGTTTTATACATCAT
*
2567687 GTACATAGATGTTTCATACATCAT
1 GTACATAGATGTTTTATACATCAT
2567711 CAGGAAGACT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (24 bp):
GTACATAGATGTTTTATACATCAT
Found at i:2575103 original size:24 final size:24
Alignment explanation
Indices: 2575076--2575123 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
2575066 GCATGACATG
2575076 GTACATAGATGTTTTATACATTAT
1 GTACATAGATGTTTTATACATTAT
*
2575100 GTACATATATGTTTTATACATTAT
1 GTACATAGATGTTTTATACATTAT
2575124 CAGGAAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.48
Consensus pattern (24 bp):
GTACATAGATGTTTTATACATTAT
Found at i:2583369 original size:90 final size:89
Alignment explanation
Indices: 2583255--2583429 Score: 278
Period size: 90 Copynumber: 2.0 Consensus size: 89
2583245 TCCCGAATAT
* * * *
2583255 TTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGATTAG
1 TTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTAG
2583320 GATAACTTGGATAGAAAAGGATAA
66 GATAACTTGGATAGAAAAGGATAA
2583344 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTA
1 TTAAATTC-AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTA
* * *
2583409 GGGTAACTTGGTTATAAAAGG
65 GGATAACTTGGATAGAAAAGG
2583430 GTGTGTTAGG
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 7 0.09
90 71 0.91
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (89 bp):
TTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTAG
GATAACTTGGATAGAAAAGGATAA
Found at i:2589334 original size:3 final size:3
Alignment explanation
Indices: 2589326--2589356 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
2589316 TTAATATGAG
2589326 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2589357 ATATTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:2589718 original size:13 final size:13
Alignment explanation
Indices: 2589700--2589729 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
2589690 ACTTTGTGAA
2589700 TTGTGTCTCAAAG
1 TTGTGTCTCAAAG
2589713 TTGTGTCTCAAAG
1 TTGTGTCTCAAAG
2589726 TTGT
1 TTGT
2589730 TTCTATGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.13, G:0.23, T:0.43
Consensus pattern (13 bp):
TTGTGTCTCAAAG
Found at i:2592910 original size:13 final size:13
Alignment explanation
Indices: 2592889--2592918 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2592879 ACTTTGTGAA
*
2592889 TTGTGTCTCAAAG
1 TTGTCTCTCAAAG
2592902 TTGTCTCTCAAAG
1 TTGTCTCTCAAAG
2592915 TTGT
1 TTGT
2592919 TTCTAAGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (13 bp):
TTGTCTCTCAAAG
Found at i:2596809 original size:23 final size:23
Alignment explanation
Indices: 2596779--2596850 Score: 96
Period size: 23 Copynumber: 3.2 Consensus size: 23
2596769 CCAAAGGATA
*
2596779 ACATAGGTTTGCACTGAAGTGCC
1 ACATAGGTTTGCACCGAAGTGCC
2596802 ACATAGGTTTGCACCGAAGTGCC
1 ACATAGGTTTGCACCGAAGTGCC
*
2596825 ACATA--TTTGTC-CCGAAGTACC
1 ACATAGGTTTG-CACCGAAGTGCC
2596846 ACATA
1 ACATA
2596851 ATTATCCCGG
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.39
22 1 0.02
23 27 0.59
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (23 bp):
ACATAGGTTTGCACCGAAGTGCC
Found at i:2596839 original size:21 final size:21
Alignment explanation
Indices: 2596794--2596859 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
2596784 GGTTTGCACT
2596794 GAAGTGCCACATAGGTTTG-CACC
1 GAAGTGCCACATA--TTTGTC-CC
2596817 GAAGTGCCACATATTTGTCCC
1 GAAGTGCCACATATTTGTCCC
* * *
2596838 GAAGTACCACATAATTATCCC
1 GAAGTGCCACATATTTGTCCC
2596859 G
1 G
2596860 GAGGACCACA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
21 25 0.64
22 1 0.03
23 13 0.33
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (21 bp):
GAAGTGCCACATATTTGTCCC
Found at i:2596867 original size:21 final size:21
Alignment explanation
Indices: 2596815--2596872 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
2596805 TAGGTTTGCA
* *
2596815 CCGAAGTG-CCACATATTTGTC
1 CCGAAG-GACCACATAATTATC
*
2596836 CCGAAGTACCACATAATTATC
1 CCGAAGGACCACATAATTATC
*
2596857 CCGGAGGACCACATAA
1 CCGAAGGACCACATAA
2596873 AACCCTCGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (21 bp):
CCGAAGGACCACATAATTATC
Found at i:2608103 original size:24 final size:24
Alignment explanation
Indices: 2608066--2608144 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
2608056 TGTTGTGTAG
* *
2608066 TTGCACATATAGTGCCACGTAGAA
1 TTGCACAGAAAGTGCCACGTAGAA
* * * *
2608090 TTGTACCGAAAGTGCCTCATAGAA
1 TTGCACAGAAAGTGCCACGTAGAA
* *
2608114 TTGCACATAAACTGCCACGTAGAA
1 TTGCACAGAAAGTGCCACGTAGAA
2608138 TGTGCAC
1 T-TGCAC
2608145 GAATGTACCA
Statistics
Matches: 42, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
24 37 0.88
25 5 0.12
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (24 bp):
TTGCACAGAAAGTGCCACGTAGAA
Found at i:2608952 original size:16 final size:16
Alignment explanation
Indices: 2608931--2608971 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
2608921 CCTAAACAAT
*
2608931 AATATACTGATATAAG
1 AATATACTGATATAAA
*
2608947 AATATAATGATATAAA
1 AATATACTGATATAAA
2608963 AATCATACT
1 AAT-ATACT
2608972 CTCATCATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (16 bp):
AATATACTGATATAAA
Found at i:2626829 original size:251 final size:251
Alignment explanation
Indices: 2626380--2626882 Score: 898
Period size: 251 Copynumber: 2.0 Consensus size: 251
2626370 ATCGTAGACT
2626380 TATGTTTAAAAGGTGGATTAGGTCTAGTTACTATGTAAAACACATTGCTTATGTTGATTCTCCTT
1 TATGTTTAAAAGGTGGATTAGGTCTAGTTACTATGTAAAACACATTGCTTATGTTGATTCTCCTT
* * *
2626445 AGTTTCTCTCAAACACTAAATATTGACTACTTAGTTTCTCTCGAACACTAAGTATTTTTCTGACG
66 AGTTTCTCTCAAACACTAAATATTGAATACTTAGTTTCTCTAGAACACTAAGTATTTTTCTAACG
2626510 AATGGCTACTCTCATAGCTCATACAACCCTAAGTCATTAAGCACCATAAACAAAACAAACAAAAT
131 AATGGCTACTCTCATAGCTCATACAACCCTAAGTCATTAAGCACCATAAACAAAACAAACAAAAT
2626575 CATATAAAAAGAACAATCATCATTTTAAAGAAAAAGCTTAAACATCTATAATGAAC
196 CATATAAAAAGAACAATCATCATTTTAAAGAAAAAGCTTAAACATCTATAATGAAC
* *
2626631 TATGTTTTAAAGGTGGATTAGGTTTAGTTACTATGTAAAACACATTGCTTATGTTGATTCTCCTT
1 TATGTTTAAAAGGTGGATTAGGTCTAGTTACTATGTAAAACACATTGCTTATGTTGATTCTCCTT
2626696 AGTTTCTCTCAAACACTAAATATTGAATACTTAGTTTCTCTAGAACACTAAGTATTTTTCTAACG
66 AGTTTCTCTCAAACACTAAATATTGAATACTTAGTTTCTCTAGAACACTAAGTATTTTTCTAACG
* * * * *
2626761 AATGGCTACTCTCATAGCTCATACAACCTTAAGTCATTAATCACCATAAACAAAAGAAATAGAAT
131 AATGGCTACTCTCATAGCTCATACAACCCTAAGTCATTAAGCACCATAAACAAAACAAACAAAAT
* *
2626826 CATATAAAAATAACAATCATCATTTTAAAGAAAAAGCTTAAACATCTATAGTGAAC
196 CATATAAAAAGAACAATCATCATTTTAAAGAAAAAGCTTAAACATCTATAATGAAC
2626882 T
1 T
2626883 CCTACCAAAT
Statistics
Matches: 240, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
251 240 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (251 bp):
TATGTTTAAAAGGTGGATTAGGTCTAGTTACTATGTAAAACACATTGCTTATGTTGATTCTCCTT
AGTTTCTCTCAAACACTAAATATTGAATACTTAGTTTCTCTAGAACACTAAGTATTTTTCTAACG
AATGGCTACTCTCATAGCTCATACAACCCTAAGTCATTAAGCACCATAAACAAAACAAACAAAAT
CATATAAAAAGAACAATCATCATTTTAAAGAAAAAGCTTAAACATCTATAATGAAC
Found at i:2632577 original size:47 final size:46
Alignment explanation
Indices: 2632480--2632592 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 46
2632470 CTATGTTATT
* * * * *
2632480 ATTAAGGCATGAAAGGATGTCATAACTAAAATGCATGAATGGTTGA
1 ATTAAGGCATGAAAGGATGCCACAAATAAAATGCATGAACGGATGA
* * *
2632526 ATTAATGCATGAAAAGGATGCCACAAATGAAATGCATGAACGGATGC
1 ATTAAGGCATG-AAAGGATGCCACAAATAAAATGCATGAACGGATGA
* *
2632573 ATTAAGGTATGAACGGATGC
1 ATTAAGGCATGAAAGGATGC
2632593 ATTAAGGCAT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
46 18 0.33
47 37 0.67
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.23
Consensus pattern (46 bp):
ATTAAGGCATGAAAGGATGCCACAAATAAAATGCATGAACGGATGA
Found at i:2632586 original size:20 final size:20
Alignment explanation
Indices: 2632559--2632658 Score: 94
Period size: 20 Copynumber: 4.7 Consensus size: 20
2632549 CAAATGAAAT
2632559 GCATGAACGGATGCATTAAG
1 GCATGAACGGATGCATTAAG
*
2632579 GTATGAACGGATGCATTAAG
1 GCATGAACGGATGCATTAAG
* *
2632599 GCATGAAAGGATGCCATAACTAAAAAT
1 GCATGAACGGATG-CAT---T---AAG
2632626 GCATGAACGGATGCATTAAG
1 GCATGAACGGATGCATTAAG
*
2632646 GCAT-AAAGGATGC
1 GCATGAACGGATGC
2632659 CATAAATGAA
Statistics
Matches: 66, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
19 8 0.12
20 36 0.55
21 3 0.05
23 1 0.02
24 1 0.02
26 3 0.05
27 14 0.21
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.20
Consensus pattern (20 bp):
GCATGAACGGATGCATTAAG
Found at i:2632698 original size:92 final size:91
Alignment explanation
Indices: 2632588--2632983 Score: 578
Period size: 92 Copynumber: 4.3 Consensus size: 91
2632578 GGTATGAACG
2632588 GATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAACGGATGCATTAAGGCAT-AA
1 GATGCATTAAGGCATGAAAGGATGCCATAACT-AAAATGCATGAACGGATGCATTAAGGCATGAA
2632652 AGGATGCCATAAATGAAATGCATGAAA
65 AGGATGCCATAAATGAAATGCATGAAA
* * * *
2632679 TGATGTATTAAGGCATGAAAGGATGCCATAACTAAAATGTATGAATGGATGTATTAAGGCATGAA
1 -GATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAA
* *
2632744 AGGATGTCATAAATGAAATGCATGAAC
65 AGGATGCCATAAATGAAATGCATGAAA
* * *
2632771 GAATACATTAAGGCAAGAAAGGATGTCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAA
1 G-ATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAA
** * *
2632836 ACCATGCCATAAATGAAATGTATAAAA
65 AGGATGCCATAAATGAAATGCATGAAA
* *
2632863 GGATGCATTAAGGCATAAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATTAA
1 -GATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAA
* * *
2632928 AGGATGTCATAACTAAAATGCATGAACA
65 AGGATGCCATAAATGAAATGCATGAA-A
2632956 GATGCATTAAGGCATGAAAGGATGCCAT
1 GATGCATTAAGGCATGAAAGGATGCCAT
2632984 TAATGAAAAC
Statistics
Matches: 268, Mismatches: 32, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
91 27 0.10
92 239 0.89
93 2 0.01
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.22
Consensus pattern (91 bp):
GATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAA
GGATGCCATAAATGAAATGCATGAAA
Found at i:2632700 original size:46 final size:46
Alignment explanation
Indices: 2632581--2632983 Score: 522
Period size: 46 Copynumber: 8.8 Consensus size: 46
2632571 GCATTAAGGT
*
2632581 ATGAACGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGC
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACT-AAAATGC
* * *
2632628 ATGAACGGATGCATTAAGGCAT-AAAGGATGCCATAAATGAAATGC
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGC
* * *
2632673 ATGAAATGATGTATTAAGGCATGAAAGGATGCCATAACTAAAATGT
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGC
* * * * *
2632719 ATGAATGGATGTATTAAGGCATGAAAGGATGTCATAAATGAAATGC
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGC
* * * * *
2632765 ATGAACGAATACATTAAGGCAAGAAAGGATGTCATAACTAAAATGC
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGC
* ** * * *
2632811 ATGAACGGATGCATTAAGGCATGAAACCATGCCATAAATGAAATGT
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGC
* *
2632857 ATAAAAGGATGCATTAAGGCATAAAAGGATGCCATAACTAAAATGC
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGC
* * *
2632903 ATGAACGGATGCATTAAGGCATTAAAGGATGTCATAACTAAAATGC
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGC
2632949 ATGAACA-GATGCATTAAGGCATGAAAGGATGCCAT
1 ATGAA-AGGATGCATTAAGGCATGAAAGGATGCCAT
2632984 TAATGAAAAC
Statistics
Matches: 309, Mismatches: 45, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
45 25 0.08
46 262 0.85
47 22 0.07
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGC
Found at i:2632740 original size:138 final size:136
Alignment explanation
Indices: 2632579--2632992 Score: 576
Period size: 138 Copynumber: 3.0 Consensus size: 136
2632569 ATGCATTAAG
*
2632579 GTATGAACGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAAATGCATGAACGGATGCATTA
1 GTATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACT-AAAATGCATGAACGGATGCATTA
* * * *
2632644 AGGCATAAAGGATGCCATAAATGAAATGCATGAAATGATGTATTAAGGCATGAAAGGATGCCATA
65 AGGCATAAAGGATGTCATAACTAAAATGCATGAAA-GATGCATTAAGGCATGAAAGGATGCCATA
*
2632709 ACTAAAAT
129 AATAAAAT
* * * * * * *
2632717 GTATGAATGGATGTATTAAGGCATGAAAGGATGTCATAAATGAAATGCATGAACGAATACATTAA
1 GTATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAA
* * **
2632782 GGCAAGAAAGGATGTCATAACTAAAATGCATGAACGGATGCATTAAGGCATGAAACCATGCCATA
66 GGC-ATAAAGGATGTCATAACTAAAATGCATGAA-AGATGCATTAAGGCATGAAAGGATGCCATA
*
2632847 AATGAAAT
129 AATAAAAT
* *
2632855 GTATAAAAGGATGCATTAAGGCATAAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAA
1 GTATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAA
*
2632920 GGCATTAAAGGATGTCATAACTAAAATGCATGAACAGATGCATTAAGGCATGAAAGGATGCCATT
66 GGCA-TAAAGGATGTCATAACTAAAATGCATGAA-AGATGCATTAAGGCATGAAAGGATGCCATA
2632985 AATGAAAA
129 AAT-AAAA
2632993 CAATGAATAA
Statistics
Matches: 240, Mismatches: 32, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
137 25 0.10
138 212 0.88
139 3 0.01
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.22
Consensus pattern (136 bp):
GTATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAACTAAAATGCATGAACGGATGCATTAA
GGCATAAAGGATGTCATAACTAAAATGCATGAAAGATGCATTAAGGCATGAAAGGATGCCATAAA
TAAAAT
Found at i:2632972 original size:20 final size:21
Alignment explanation
Indices: 2632947--2632986 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
2632937 TAACTAAAAT
2632947 GCATGAACA-GATG-CATTAAG
1 GCATGAA-AGGATGCCATTAAG
2632967 GCATGAAAGGATGCCATTAA
1 GCATGAAAGGATGCCATTAA
2632987 TGAAAACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 11 0.61
21 6 0.33
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (21 bp):
GCATGAAAGGATGCCATTAAG
Found at i:2636001 original size:39 final size:39
Alignment explanation
Indices: 2635908--2636003 Score: 111
Period size: 39 Copynumber: 2.5 Consensus size: 39
2635898 AGCATAAAGA
* * * *
2635908 CCTGCAGTAAGGACATACCCTATGCACAAAGCAGACGTG
1 CCTGCAGTAAGGACTTACCATAAGCACAAAGCAGACGAG
* * * * *
2635947 CTTGCAGTAATGACTTACCATAAGCGCAAAGCCGAGGAG
1 CCTGCAGTAAGGACTTACCATAAGCACAAAGCAGACGAG
2635986 CCTGCAGTAAGGACTTAC
1 CCTGCAGTAAGGACTTAC
2636004 AAGTCATAGA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.32, C:0.26, G:0.24, T:0.18
Consensus pattern (39 bp):
CCTGCAGTAAGGACTTACCATAAGCACAAAGCAGACGAG
Found at i:2638351 original size:16 final size:16
Alignment explanation
Indices: 2638327--2638358 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2638317 TAATTTAATC
*
2638327 AAATTACAGTATAAGT
1 AAATAACAGTATAAGT
2638343 AAATAACAGTATAAGT
1 AAATAACAGTATAAGT
2638359 TAAAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.28
Consensus pattern (16 bp):
AAATAACAGTATAAGT
Found at i:2646690 original size:30 final size:30
Alignment explanation
Indices: 2646654--2646734 Score: 144
Period size: 30 Copynumber: 2.7 Consensus size: 30
2646644 TCGTGAACTC
*
2646654 TAAATAAATGAATATGAACACTTTCAAAAA
1 TAAATAAACGAATATGAACACTTTCAAAAA
2646684 TAAATAAACGAATATGAACACTTTCAAAAA
1 TAAATAAACGAATATGAACACTTTCAAAAA
*
2646714 TAAATACACGAATATGAACAC
1 TAAATAAACGAATATGAACAC
2646735 AATACTAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.56, C:0.14, G:0.07, T:0.23
Consensus pattern (30 bp):
TAAATAAACGAATATGAACACTTTCAAAAA
Found at i:2647530 original size:2 final size:2
Alignment explanation
Indices: 2647525--2647557 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2647515 TACACACACG
2647525 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2647558 TAATCACCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2650833 original size:17 final size:17
Alignment explanation
Indices: 2650790--2650855 Score: 71
Period size: 17 Copynumber: 3.8 Consensus size: 17
2650780 TTAAAGCATC
2650790 TAGTTCATTGAA-TAAAGT
1 TAGTTCATT-AATTAAA-T
*
2650808 TATTTCATTAATTAAAT
1 TAGTTCATTAATTAAAT
* *
2650825 TAGTTCATTAATCAAAC
1 TAGTTCATTAATTAAAT
*
2650842 TAGTTCATTTATTA
1 TAGTTCATTAATTA
2650856 CACTAACTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
17 29 0.71
18 12 0.29
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.45
Consensus pattern (17 bp):
TAGTTCATTAATTAAAT
Found at i:2654763 original size:17 final size:17
Alignment explanation
Indices: 2654741--2654783 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
2654731 TGAATAAAGT
* *
2654741 TAGTTCCTTAATTAAAC
1 TAGTTCATTAATCAAAC
*
2654758 TAGTTCATTCATCAAAC
1 TAGTTCATTAATCAAAC
2654775 TAGTTCATT
1 TAGTTCATT
2654784 TATTACATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.42
Consensus pattern (17 bp):
TAGTTCATTAATCAAAC
Found at i:2656866 original size:37 final size:37
Alignment explanation
Indices: 2656816--2656893 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
2656806 CGTACTATTC
2656816 AAAGATTAACCATCTCTTTTAAATTTGGTATAATGAT
1 AAAGATTAACCATCTCTTTTAAATTTGGTATAATGAT
2656853 AAAGATTAACCATCTCTTTTAAATTTGGTATAATGAT
1 AAAGATTAACCATCTCTTTTAAATTTGGTATAATGAT
2656890 AAAG
1 AAAG
2656894 TTATCTCTAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (37 bp):
AAAGATTAACCATCTCTTTTAAATTTGGTATAATGAT
Found at i:2658772 original size:67 final size:67
Alignment explanation
Indices: 2658596--2658772 Score: 291
Period size: 67 Copynumber: 2.6 Consensus size: 67
2658586 TACTTGCACA
* *
2658596 AGAGCACCTAATCATATTTATTCCAGGTGACTCACACAGGAGTCCTGAAGGGGAGCCCCAAAGGA
1 AGAGCACCTAATCATATTTATTCCAGGTGACTCACATAGGAGTCCCGAAGGGGAGCCCCAAAGGA
2658661 TG
66 TG
2658663 AGAGCACCTAATCATATTTATTCCAGGTGACTCACATAGGAGTCCCGAAGGGGAGCCCCAAAGGA
1 AGAGCACCTAATCATATTTATTCCAGGTGACTCACATAGGAGTCCCGAAGGGGAGCCCCAAAGGA
2658728 TG
66 TG
* * * * *
2658730 AGAGAACCTAATCATATTTATTACAAGTGACTCGCATGGGAGT
1 AGAGCACCTAATCATATTTATTCCAGGTGACTCACATAGGAGT
2658773 ACCTAATCAT
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 103 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (67 bp):
AGAGCACCTAATCATATTTATTCCAGGTGACTCACATAGGAGTCCCGAAGGGGAGCCCCAAAGGA
TG
Found at i:2658916 original size:69 final size:66
Alignment explanation
Indices: 2658755--2658938 Score: 181
Period size: 69 Copynumber: 2.7 Consensus size: 66
2658745 ATTTATTACA
* * * * *
2658755 AGTGACTCGCATGGGAGTACCTAATCATATTTATTTCGGTGAATTGCACGAGTCCTAGAGGACTA
1 AGTGACTCGCATGAGAGTACCTAATCATATTTATTTAGGTGACTCGCACGAGCCCTAGAGGACTA
2658820 G
66 G
** * * * * *
2658821 AGTGACTCATACGTGAGCACCTAATCATATTTATTATGGGTGACTCGTACGGGAGCCCTTA-AGG
1 AGTGACTCGCATGAGAGTACCTAATCATATTTATT-TAGGTGACTCGCAC--GAGCCC-TAGAGG
*
2658885 ATTAG
62 ACTAG
* *
2658890 AGTGAATCGCATGAGAGTACCTAATCATATATATTTTAGGTGACTCGCA
1 AGTGACTCGCATGAGAGTACCTAATCATATTTA-TTTAGGTGACTCGCA
2658939 TATAAAAATG
Statistics
Matches: 93, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
66 30 0.32
67 10 0.11
69 49 0.53
70 4 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (66 bp):
AGTGACTCGCATGAGAGTACCTAATCATATTTATTTAGGTGACTCGCACGAGCCCTAGAGGACTA
G
Found at i:2665868 original size:11 final size:11
Alignment explanation
Indices: 2665854--2665879 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
2665844 CAAGTTCGAC
2665854 ATTTGTTCTTA
1 ATTTGTTCTTA
2665865 ATTTGTTCTTA
1 ATTTGTTCTTA
2665876 ATTT
1 ATTT
2665880 CAATATGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.65
Consensus pattern (11 bp):
ATTTGTTCTTA
Found at i:2673209 original size:65 final size:64
Alignment explanation
Indices: 2673076--2673235 Score: 182
Period size: 65 Copynumber: 2.5 Consensus size: 64
2673066 TACATTGAGG
* * * * *
2673076 GTGCATTGATGCATAAAA-CACATTCGATGTTTTAAAATAGTCGGGGTGCATCTATGCATAGCTT
1 GTGCATCGGTGCATAAAATCA-ATTCGATGTTTTAAAATAATCGGAGTGCATCAATGCATAGCTT
*
2673140 GTGCATCGGTGCATAAAATCAATTTGATGTTTTAATAATACAT-GGAGTGCATCAATGCATAG-T
1 GTGCATCGGTGCATAAAATCAATTCGATGTTTTAA-AATA-ATCGGAGTGCATCAATGCATAGCT
2673203 AT
64 -T
* * *
2673205 GTGCATCGGTACACAAAATCCATTCGATGTT
1 GTGCATCGGTGCATAAAATCAATTCGATGTT
2673236 CAATTAAAAC
Statistics
Matches: 82, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
64 30 0.37
65 51 0.62
66 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (64 bp):
GTGCATCGGTGCATAAAATCAATTCGATGTTTTAAAATAATCGGAGTGCATCAATGCATAGCTT
Found at i:2675473 original size:20 final size:20
Alignment explanation
Indices: 2675448--2675499 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
2675438 ACCCGAAAGA
2675448 TGCATCGATGCATGGCTCTG
1 TGCATCGATGCATGGCTCTG
2675468 TGCATCGATGCATGGCTCTG
1 TGCATCGATGCATGGCTCTG
2675488 TGCATCGATGCA
1 TGCATCGATGCA
2675500 CATTCAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.17, C:0.25, G:0.29, T:0.29
Consensus pattern (20 bp):
TGCATCGATGCATGGCTCTG
Found at i:2675549 original size:21 final size:22
Alignment explanation
Indices: 2675491--2675588 Score: 71
Period size: 21 Copynumber: 4.4 Consensus size: 22
2675481 GGCTCTGTGC
*
2675491 ATCGATGCACATTCAAAGA-GT
1 ATCGATGCACATTCAATGATGT
*
2675512 ACATCGATGCGTC-TTC-ATGATGT
1 --ATCGATGC-ACATTCAATGATGT
*
2675535 ATCGATGCACATTCATATGGATGC
1 ATCGATGCACATTCA-AT-GATGT
*
2675559 ATCGATGCACCTTC-AT-AGTGT
1 ATCGATGCACATTCAATGA-TGT
2675580 ATCGATGCA
1 ATCGATGCA
2675589 TTATGCACAA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
20 2 0.03
21 22 0.35
22 5 0.08
23 15 0.24
24 18 0.29
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (22 bp):
ATCGATGCACATTCAATGATGT
Found at i:2675562 original size:24 final size:24
Alignment explanation
Indices: 2675530--2675575 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
2675520 GCGTCTTCAT
*
2675530 GATGTATCGATGCACATTCATATG
1 GATGCATCGATGCACATTCATATG
*
2675554 GATGCATCGATGCACCTTCATA
1 GATGCATCGATGCACATTCATA
2675576 GTGTATCGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
GATGCATCGATGCACATTCATATG
Found at i:2675574 original size:45 final size:44
Alignment explanation
Indices: 2675491--2675588 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 44
2675481 GGCTCTGTGC
**
2675491 ATCGATGCACATTCAAAGAGTACATCGATGCGTCTTCAT-GATGT
1 ATCGATGCACATTCAAAGAGTACATCGATGCACCTTCATAG-TGT
* *
2675535 ATCGATGCACATTCATATG-GATGCATCGATGCACCTTCATAGTGT
1 ATCGATGCACATTCA-AAGAG-TACATCGATGCACCTTCATAGTGT
2675580 ATCGATGCA
1 ATCGATGCA
2675589 TTATGCACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
44 16 0.34
45 30 0.64
46 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (44 bp):
ATCGATGCACATTCAAAGAGTACATCGATGCACCTTCATAGTGT
Found at i:2686732 original size:90 final size:90
Alignment explanation
Indices: 2686579--2686760 Score: 364
Period size: 90 Copynumber: 2.0 Consensus size: 90
2686569 ATGAGGTATT
2686579 TCCTAGGTATGGAAGTCGCTAGGTCTGAGGAAGGGCTGGTCATAAACCAACGTAAGTGTGTTTTG
1 TCCTAGGTATGGAAGTCGCTAGGTCTGAGGAAGGGCTGGTCATAAACCAACGTAAGTGTGTTTTG
2686644 GATCTTCATGCAGAAACTGGGATGC
66 GATCTTCATGCAGAAACTGGGATGC
2686669 TCCTAGGTATGGAAGTCGCTAGGTCTGAGGAAGGGCTGGTCATAAACCAACGTAAGTGTGTTTTG
1 TCCTAGGTATGGAAGTCGCTAGGTCTGAGGAAGGGCTGGTCATAAACCAACGTAAGTGTGTTTTG
2686734 GATCTTCATGCAGAAACTGGGATGC
66 GATCTTCATGCAGAAACTGGGATGC
2686759 TC
1 TC
2686761 GACTGCAAAC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 92 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (90 bp):
TCCTAGGTATGGAAGTCGCTAGGTCTGAGGAAGGGCTGGTCATAAACCAACGTAAGTGTGTTTTG
GATCTTCATGCAGAAACTGGGATGC
Found at i:2696111 original size:2 final size:2
Alignment explanation
Indices: 2696104--2696131 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2696094 TTATCATAAA
2696104 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2696132 GAAAATAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2696168 original size:23 final size:25
Alignment explanation
Indices: 2696119--2696173 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 25
2696109 TATATATATA
* **
2696119 TATATATATATATGAAAATAATTATC
1 TATATA-ACATATGAAAATAAGCATC
2696145 T-TATAACATATG-AAATAAGCATC
1 TATATAACATATGAAAATAAGCATC
2696168 TATATA
1 TATATA
2696174 TATAAAGTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 10 0.40
24 10 0.40
25 4 0.16
26 1 0.04
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.38
Consensus pattern (25 bp):
TATATAACATATGAAAATAAGCATC
Found at i:2698012 original size:54 final size:53
Alignment explanation
Indices: 2697941--2698234 Score: 333
Period size: 54 Copynumber: 5.4 Consensus size: 53
2697931 ATAAGTTCTT
* * * * *
2697941 TGGGGTGCACACGTAGTGATGATACGATCGTTCATAATCTTATTATAAATTTCG
1 TGGGTTGCACACTTAGTG-TGATACGGTCGTTCATAAACTTATTATGAATTTCG
* * * *
2697995 TAGGTTGCACACTTAGTGTTAATATGGTTGTTCATAAACTTATTATGAATTAT-G
1 TGGGTTGCACACTTAGTG-TGATACGGTCGTTCATAAACTTATTATGAATT-TCG
*
2698049 TGGGTTGCACACTTAGTGTCGATACGGTCGTTCATAAACTTATTATGAA-TTCTA
1 TGGGTTGCACACTTAGTGT-GATACGGTCGTTCATAAACTTATTATGAATTTC-G
* * *
2698103 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCAAAAACATATTATGAATTTCG
1 TGGGTTGCACACTTAGTG-TGATACGGTCGTTCATAAACTTATTATGAATTTCG
* * * *
2698157 TGGGTTAG-ATACTTAGTGTCAATACGGTAGTTCATAAACTTATTATGAATTTTG
1 TGGGTT-GCACACTTAGTGT-GATACGGTCGTTCATAAACTTATTATGAATTTCG
2698211 TGGGTTGCACACTTAGTGTCGATA
1 TGGGTTGCACACTTAGTGT-GATA
2698235 GTACATATAA
Statistics
Matches: 203, Mismatches: 28, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
52 1 0.00
53 3 0.01
54 194 0.96
55 5 0.02
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (53 bp):
TGGGTTGCACACTTAGTGTGATACGGTCGTTCATAAACTTATTATGAATTTCG
Found at i:2698215 original size:162 final size:162
Alignment explanation
Indices: 2697928--2698234 Score: 438
Period size: 162 Copynumber: 1.9 Consensus size: 162
2697918 TTTACAAGTC
* * * * *
2697928 ATTATAAGTTCTTTGGGGTGCACACGTAGTGATGATACGATCGTTCATAATCTTATTATAAATTT
1 ATTATAAGTTCTATGGGGTGCACACGTAGTGACGATACGATCGTTCAAAAACATATTATAAATTT
* * *
2697993 CGTAGGTTGCACACTTAGTGTTAATATGGTTGTTCATAAACTTATTATGAATTATGTGGGTTGCA
66 CGTAGGTTGCACACTTAGTGTCAATACGGTAGTTCATAAACTTATTATGAATTATGTGGGTTGCA
2698058 CACTTAGTGTCGATACGGTCGTTCATAAACTT
131 CACTTAGTGTCGATACGGTCGTTCATAAACTT
* * * * *
2698090 ATTATGAA-TTCTATGGGTTGCACACTTAGTGCCGATACGGTCGTTCAAAAACATATTATGAATT
1 ATTAT-AAGTTCTATGGGGTGCACACGTAGTGACGATACGATCGTTCAAAAACATATTATAAATT
* * *
2698154 TCGTGGGTTAG-ATACTTAGTGTCAATACGGTAGTTCATAAACTTATTATGAATTTTGTGGGTTG
65 TCGTAGGTT-GCACACTTAGTGTCAATACGGTAGTTCATAAACTTATTATGAATTATGTGGGTTG
2698218 CACACTTAGTGTCGATA
129 CACACTTAGTGTCGATA
2698235 GTACATATAA
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
162 124 0.98
163 3 0.02
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.38
Consensus pattern (162 bp):
ATTATAAGTTCTATGGGGTGCACACGTAGTGACGATACGATCGTTCAAAAACATATTATAAATTT
CGTAGGTTGCACACTTAGTGTCAATACGGTAGTTCATAAACTTATTATGAATTATGTGGGTTGCA
CACTTAGTGTCGATACGGTCGTTCATAAACTT
Found at i:2702287 original size:54 final size:53
Alignment explanation
Indices: 2702228--2702559 Score: 290
Period size: 54 Copynumber: 6.3 Consensus size: 53
2702218 TTCTTTCGGG
** *
2702228 TGCACACGCAGTGCTGATACAGTCGTTCATAAACTTATTATGAATTTTGTGGGT
1 TGCACACTTAGTG-TGATACAGTCGTTCATAAACTTATTATGAATTATGTGGGT
* * * *
2702282 TGCACACTTAGTGAAGATACAATCGTTTATAAACTTATTATGAATTACGTGGGT
1 TGCACACTTAGTG-TGATACAGTCGTTCATAAACTTATTATGAATTATGTGGGT
* * * ** **
2702336 TGCACACTTAGTGTCAACACAATCAATCATAAAC-T-TTCCG----A---GGGT
1 TGCACACTTAGTGT-GATACAGTCGTTCATAAACTTATTATGAATTATGTGGGT
* * * *
2702381 TGCACACTTAGTGTCGATACGGTTGTTCATAAACTTGTTATGAATTTTGTGGGT
1 TGCACACTTAGTGT-GATACAGTCGTTCATAAACTTATTATGAATTATGTGGGT
* *
2702435 TGCACACTTAGTGCAGATACGGTCGTTCATAAACTTATTATGAATTATGTGGGT
1 TGCACACTTAGTG-TGATACAGTCGTTCATAAACTTATTATGAATTATGTGGGT
* ** * *
2702489 TGCACAC--AATGTTGATATGGTCGTACATAAACTTATTATGAATTATGTGAGT
1 TGCACACTTAGTG-TGATACAGTCGTTCATAAACTTATTATGAATTATGTGGGT
*
2702541 TGTACACTTAGTGTCGATA
1 TGCACACTTAGTGT-GATA
2702560 GTACACATAG
Statistics
Matches: 226, Mismatches: 38, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
45 31 0.14
46 1 0.00
47 3 0.01
48 1 0.00
52 48 0.21
53 2 0.01
54 140 0.62
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (53 bp):
TGCACACTTAGTGTGATACAGTCGTTCATAAACTTATTATGAATTATGTGGGT
Found at i:2705103 original size:22 final size:22
Alignment explanation
Indices: 2705073--2705125 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
2705063 TATCTAATTA
*
2705073 TATAGATAATAATTTAGA-ATAT
1 TATATATAATAATTTA-ATATAT
2705095 TATATATAATAATTTAATATAT
1 TATATATAATAATTTAATATAT
2705117 TATAATATA
1 TAT-ATATA
2705126 CAAAATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 1 0.04
22 22 0.79
23 5 0.18
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (22 bp):
TATATATAATAATTTAATATAT
Found at i:2705133 original size:17 final size:17
Alignment explanation
Indices: 2705113--2705153 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
2705103 ATAATTTAAT
2705113 ATATTATAA-TATACAAA
1 ATATTATAATTATA-AAA
*
2705130 ATA-TATAATTATATAA
1 ATATTATAATTATAAAA
2705146 ATATTATA
1 ATATTATA
2705154 TATTCCATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATTATAATTATAAAA
Found at i:2709977 original size:20 final size:20
Alignment explanation
Indices: 2709935--2709977 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2709925 GTAGACATCT
* *
2709935 TTGTAGCTGCTAAATTCATA
1 TTGTAGCTGCAAAATTCAGA
*
2709955 TTGTAGCTGCAAAATTCGGA
1 TTGTAGCTGCAAAATTCAGA
2709975 TTG
1 TTG
2709978 CGTCTGCTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (20 bp):
TTGTAGCTGCAAAATTCAGA
Found at i:2711059 original size:2 final size:2
Alignment explanation
Indices: 2711052--2711080 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2711042 TGAAGCATGA
2711052 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2711081 CACACGCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2711379 original size:15 final size:15
Alignment explanation
Indices: 2711361--2711390 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2711351 TCGATGAATA
2711361 TTTATATAAATAATT
1 TTTATATAAATAATT
*
2711376 TTTATTTAAATAATT
1 TTTATATAAATAATT
2711391 AGAATATCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTATATAAATAATT
Found at i:2719764 original size:13 final size:13
Alignment explanation
Indices: 2719729--2719770 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
2719719 TTGACCAGTC
2719729 TGACCCGACCCGT
1 TGACCCGACCCGT
*
2719742 TGA-CCAACCCGT
1 TGACCCGACCCGT
*
2719754 TGACCCGACCCGG
1 TGACCCGACCCGT
2719767 TGAC
1 TGAC
2719771 ATTCTGGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.19, C:0.43, G:0.24, T:0.14
Consensus pattern (13 bp):
TGACCCGACCCGT
Found at i:2719808 original size:29 final size:29
Alignment explanation
Indices: 2719766--2719890 Score: 119
Period size: 29 Copynumber: 4.3 Consensus size: 29
2719756 ACCCGACCCG
2719766 GTGACATTCTGGGAAATATTTCGAAAAAA
1 GTGACATTCTGGGAAATATTTCGAAAAAA
* * * *
2719795 GTGACATTTTGGGAATTATCTTC-AAGAAG
1 GTGACATTCTGGGAAATAT-TTCGAAAAAA
* * * *
2719824 GTGACAATGTAGGAAATATTTTG-AAAAA
1 GTGACATTCTGGGAAATATTTCGAAAAAA
* *
2719852 GTTGACATTCTGGGAATTATTTTGAAAAAA
1 G-TGACATTCTGGGAAATATTTCGAAAAAA
2719882 TGTGACATT
1 -GTGACATT
2719891 TTTGGAATTT
Statistics
Matches: 76, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
28 6 0.08
29 54 0.71
30 15 0.20
31 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (29 bp):
GTGACATTCTGGGAAATATTTCGAAAAAA
Found at i:2727143 original size:10 final size:10
Alignment explanation
Indices: 2727128--2727204 Score: 56
Period size: 10 Copynumber: 8.0 Consensus size: 10
2727118 GACCGATTTG
*
2727128 ACCGGTCCGA
1 ACCGGTCTGA
2727138 ACCGGTCTGA
1 ACCGGTCTGA
* *
2727148 ACAGGTTTG-
1 ACCGGTCTGA
2727157 ACCGGTCTGA
1 ACCGGTCTGA
2727167 ACCGGGT-TG-
1 ACC-GGTCTGA
**
2727176 ACCATTCTGA
1 ACCGGTCTGA
2727186 ACCGGGT-TG-
1 ACC-GGTCTGA
2727195 ACCGGTCTGA
1 ACCGGTCTGA
2727205 CCTGACCCGT
Statistics
Matches: 51, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
8 4 0.08
9 17 0.33
10 26 0.51
11 4 0.08
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (10 bp):
ACCGGTCTGA
Found at i:2727160 original size:19 final size:19
Alignment explanation
Indices: 2727138--2727204 Score: 98
Period size: 19 Copynumber: 3.5 Consensus size: 19
2727128 ACCGGTCCGA
* *
2727138 ACCGGTCTGAACAGGTTTG
1 ACCGGTCTGAACCGGGTTG
2727157 ACCGGTCTGAACCGGGTTG
1 ACCGGTCTGAACCGGGTTG
**
2727176 ACCATTCTGAACCGGGTTG
1 ACCGGTCTGAACCGGGTTG
2727195 ACCGGTCTGA
1 ACCGGTCTGA
2727205 CCTGACCCGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 42 1.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (19 bp):
ACCGGTCTGAACCGGGTTG
Found at i:2727228 original size:17 final size:17
Alignment explanation
Indices: 2727203--2727236 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2727193 TGACCGGTCT
* *
2727203 GACCTGACCCGTTGACC
1 GACCCGACCCATTGACC
2727220 GACCCGACCCATTGACC
1 GACCCGACCCATTGACC
2727237 CGATCCGGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.44, G:0.21, T:0.15
Consensus pattern (17 bp):
GACCCGACCCATTGACC
Found at i:2727298 original size:30 final size:29
Alignment explanation
Indices: 2727244--2727377 Score: 146
Period size: 29 Copynumber: 4.6 Consensus size: 29
2727234 ACCCGATCCG
*
2727244 GTGACATTTTGGGAAATA-TTTCAAAAAAA
1 GTGACATTTTGGGAATTATTTTC-AAAAAA
*
2727273 GTGACATTTTGGGAATTATTTTCAAAAAG
1 GTGACATTTTGGGAATTATTTTCAAAAAA
* * * *
2727302 GTGACAATCTGGGAAATATTTT-GAAAAA
1 GTGACATTTTGGGAATTATTTTCAAAAAA
* * *
2727330 GTTTACATTATGGGAATTATTTTGAAAAAA
1 G-TGACATTTTGGGAATTATTTTCAAAAAA
2727360 GGTGACATTTTGGGAATT
1 -GTGACATTTTGGGAATT
2727378 TTCGAATGTG
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
28 5 0.06
29 58 0.67
30 23 0.26
31 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (29 bp):
GTGACATTTTGGGAATTATTTTCAAAAAA
Found at i:2727338 original size:58 final size:59
Alignment explanation
Indices: 2727243--2727375 Score: 180
Period size: 58 Copynumber: 2.3 Consensus size: 59
2727233 GACCCGATCC
* *
2727243 GGTGACATTTTGGGAAATATTTCAAAAAAAGTGACATTTTGGGAATTATTTT-CAAAAA
1 GGTGACATTTTGGGAAATATTTCAAAAAAAGTGACATTATGGGAATTATTTTGAAAAAA
* * ** *
2727301 GGTGACAATCTGGGAAATATTT-TGAAAAAGTTTACATTATGGGAATTATTTTGAAAAAA
1 GGTGACATTTTGGGAAATATTTCAAAAAAAG-TGACATTATGGGAATTATTTTGAAAAAA
2727360 GGTGACATTTTGGGAA
1 GGTGACATTTTGGGAA
2727376 TTTTCGAATG
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 6 0.09
58 39 0.61
59 19 0.30
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34
Consensus pattern (59 bp):
GGTGACATTTTGGGAAATATTTCAAAAAAAGTGACATTATGGGAATTATTTTGAAAAAA
Found at i:2729533 original size:13 final size:13
Alignment explanation
Indices: 2729512--2729588 Score: 73
Period size: 15 Copynumber: 5.5 Consensus size: 13
2729502 TCTAAAAAAT
*
2729512 TATTTAAAATTAA
1 TATTAAAAATTAA
*
2729525 TATTAAAAAATATTA
1 TATT-AAAAAT-TAA
2729540 TATTTAAAAATTAA
1 TA-TTAAAAATTAA
*
2729554 TATTAACAAATATTA
1 TATTAA-AAAT-TAA
2729569 TATTTAAAAATTAA
1 TA-TTAAAAATTAA
2729583 TATTAA
1 TATTAA
2729589 TCAAATGAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
13 12 0.23
14 17 0.32
15 18 0.34
16 6 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (13 bp):
TATTAAAAATTAA
Found at i:2729539 original size:16 final size:15
Alignment explanation
Indices: 2729517--2729588 Score: 71
Period size: 14 Copynumber: 4.9 Consensus size: 15
2729507 AAAATTATTT
2729517 AAAATTAATATTAAA
1 AAAATTAATATTAAA
*
2729532 AAATATT-ATATT-TA
1 AAA-ATTAATATTAAA
2729546 AAAATTAATATTAACA
1 AAAATTAATATTAA-A
* *
2729562 AATATT-ATATT-TA
1 AAAATTAATATTAAA
2729575 AAAATTAATATTAA
1 AAAATTAATATTAA
2729589 TCAAATGAGT
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
13 9 0.20
14 14 0.31
15 13 0.29
16 9 0.20
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATTAATATTAAA
Found at i:2729554 original size:29 final size:29
Alignment explanation
Indices: 2729512--2729588 Score: 138
Period size: 29 Copynumber: 2.7 Consensus size: 29
2729502 TCTAAAAAAT
2729512 TATTT-AAAATTAATATTAAAAAATATTA
1 TATTTAAAAATTAATATTAAAAAATATTA
*
2729540 TATTTAAAAATTAATATTAACAAATATTA
1 TATTTAAAAATTAATATTAAAAAATATTA
2729569 TATTTAAAAATTAATATTAA
1 TATTTAAAAATTAATATTAA
2729589 TCAAATGAGT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 5 0.11
29 42 0.89
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (29 bp):
TATTTAAAAATTAATATTAAAAAATATTA
Found at i:2729962 original size:2 final size:2
Alignment explanation
Indices: 2729955--2729989 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
2729945 AATTATTATC
*
2729955 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2729990 GTTATTATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2733298 original size:165 final size:166
Alignment explanation
Indices: 2733026--2733356 Score: 655
Period size: 165 Copynumber: 2.0 Consensus size: 166
2733016 AGAAAAAGAG
2733026 GCCCCTGAACGATCAAGAGATATCTGGTGCTTTAAATGTCTTGGGAGAGGGCATGTATCCACACA
1 GCCCCTGAACGATCAAGAGATATCTGGTGCTTTAAATGTCTTGGGAGAGGGCATGTATCCACACA
2733091 ATGTCCCAACCGAAACACCATGTTACTACTAGGAAATGGTGAGATTGAATCTGACCACGAAGAAG
66 ATGTCCCAACCGAAACACCATGTTACTACTAGGAAATGGTGAGATTGAATCTGACCACGAAGAAG
2733156 AAGAAGC-CCGCCAACAGAAGTTGAGGAAGAAGCCA
131 AAGAAGCACCGCCAACAGAAGTTGAGGAAGAAGCCA
2733191 GCCCCTGAACGATCAAGAGATATCTGGTGCTTTAAATGTCTTGGGAGAGGGCATGTATCCACACA
1 GCCCCTGAACGATCAAGAGATATCTGGTGCTTTAAATGTCTTGGGAGAGGGCATGTATCCACACA
2733256 ATGTCCCAACCGAAACACCATGTTACTACTAGGAAATGGTGAGATTGAATCTGACCACGAAGAAG
66 ATGTCCCAACCGAAACACCATGTTACTACTAGGAAATGGTGAGATTGAATCTGACCACGAAGAAG
2733321 AAGAAGCACCGCCAACAGAAGTTGAGGAAGAAGCCA
131 AAGAAGCACCGCCAACAGAAGTTGAGGAAGAAGCCA
2733357 AAAAGTGATG
Statistics
Matches: 165, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
165 137 0.83
166 28 0.17
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (166 bp):
GCCCCTGAACGATCAAGAGATATCTGGTGCTTTAAATGTCTTGGGAGAGGGCATGTATCCACACA
ATGTCCCAACCGAAACACCATGTTACTACTAGGAAATGGTGAGATTGAATCTGACCACGAAGAAG
AAGAAGCACCGCCAACAGAAGTTGAGGAAGAAGCCA
Found at i:2735805 original size:22 final size:21
Alignment explanation
Indices: 2735768--2735809 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
2735758 CCATCTCTAT
2735768 TTCATCATCAACACCATCAAC
1 TTCATCATCAACACCATCAAC
*
2735789 TTCATCCATCAAGACCATCAA
1 TTCAT-CATCAACACCATCAA
2735810 TTCTGAACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.38, C:0.36, G:0.02, T:0.24
Consensus pattern (21 bp):
TTCATCATCAACACCATCAAC
Found at i:2736604 original size:24 final size:24
Alignment explanation
Indices: 2736570--2736626 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
2736560 GCTCATCGTC
*
2736570 CTCCTCGGCAGCCAGTTCTAGCTT
1 CTCCTCAGCAGCCAGTTCTAGCTT
2736594 CTCCTCAGCAGCCAGTTCTAGCTT
1 CTCCTCAGCAGCCAGTTCTAGCTT
2736618 CTCCTCAGC
1 CTCCTCAGC
2736627 CTCCAATATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.14, C:0.40, G:0.18, T:0.28
Consensus pattern (24 bp):
CTCCTCAGCAGCCAGTTCTAGCTT
Found at i:2748433 original size:13 final size:13
Alignment explanation
Indices: 2748415--2748479 Score: 85
Period size: 13 Copynumber: 5.0 Consensus size: 13
2748405 AATGACGCTC
*
2748415 AATGCGCGTCATA
1 AATGCGAGTCATA
2748428 AATGCGAGTCATA
1 AATGCGAGTCATA
*
2748441 AATGTGAGTCATA
1 AATGCGAGTCATA
* *
2748454 AATGTGTGTCATA
1 AATGCGAGTCATA
*
2748467 AATGCGCGTCATA
1 AATGCGAGTCATA
2748480 GATTTATGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (13 bp):
AATGCGAGTCATA
Found at i:2748433 original size:85 final size:85
Alignment explanation
Indices: 2748283--2748443 Score: 232
Period size: 85 Copynumber: 1.9 Consensus size: 85
2748273 TGTAATTCAT
* * *
2748283 ACAAATGTGTGTCATCTTCATTTATGACGGGAGCTTCAATGACACACAATGTAAGTTATACATGC
1 ACAAATGTGTGTCATCTTCATTTATGACGGGAGCTTCAATGACACACAATGCAAGTCATAAATGC
*
2748348 GTGTCATAAATTTATGACAC
66 GAGTCATAAATTTATGACAC
* * * * **
2748368 ACAAATGTGTTTCATCTTCATTTATGACGGGGGCTTCAATGACGCTCAATGCGCGTCATAAATGC
1 ACAAATGTGTGTCATCTTCATTTATGACGGGAGCTTCAATGACACACAATGCAAGTCATAAATGC
2748433 GAGTCATAAAT
66 GAGTCATAAAT
2748444 GTGAGTCATA
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 66 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (85 bp):
ACAAATGTGTGTCATCTTCATTTATGACGGGAGCTTCAATGACACACAATGCAAGTCATAAATGC
GAGTCATAAATTTATGACAC
Found at i:2748444 original size:26 final size:26
Alignment explanation
Indices: 2748415--2748479 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
2748405 AATGACGCTC
2748415 AATGCGCGTCATAAATGCGAGTCATA
1 AATGCGCGTCATAAATGCGAGTCATA
* * * *
2748441 AATGTGAGTCATAAATGTGTGTCATA
1 AATGCGCGTCATAAATGCGAGTCATA
2748467 AATGCGCGTCATA
1 AATGCGCGTCATA
2748480 GATTTATGAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (26 bp):
AATGCGCGTCATAAATGCGAGTCATA
Found at i:2748462 original size:85 final size:84
Alignment explanation
Indices: 2748283--2748462 Score: 204
Period size: 85 Copynumber: 2.1 Consensus size: 84
2748273 TGTAATTCAT
* * *
2748283 ACAAATGTGTG-TCATCTTCATTTATGACGGGAGCTTCAATGACACACAATGTAAGTTATACATG
1 ACAAATGTGTGTTCATCTTCATTTATGACGGGAGCTTCAATGACACACAATGCAAGTCATAAATG
* *
2748347 CGTGTCATAAATTTATGACAC
66 CGAGTCATAAATTGATG--AC
* * * **
2748368 ACAAATGTGT-TTCATCTTCATTTATGACGGGGGCTTCAATGACGCTCAATGCGCGTCATAAATG
1 ACAAATGTGTGTTCATCTTCATTTATGACGGGAGCTTCAATGACACACAATGCAAGTCATAAATG
*
2748432 CGAGTCATAAATGTGA-GTC
66 CGAGTCATAAAT-TGATGAC
*
2748451 ATAAATGTGTGT
1 ACAAATGTGTGT
2748463 CATAAATGCG
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
83 10 0.12
84 1 0.01
85 67 0.84
86 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (84 bp):
ACAAATGTGTGTTCATCTTCATTTATGACGGGAGCTTCAATGACACACAATGCAAGTCATAAATG
CGAGTCATAAATTGATGAC
Found at i:2749826 original size:22 final size:22
Alignment explanation
Indices: 2749790--2749831 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
2749780 TATATTTTCA
*
2749790 GTTAATTTGGCCGATCAATTCG
1 GTTAATTCGGCCGATCAATTCG
* *
2749812 GTTAATTCGGTCGATTAATT
1 GTTAATTCGGCCGATCAATT
2749832 AATCGATTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (22 bp):
GTTAATTCGGCCGATCAATTCG
Found at i:2752400 original size:14 final size:14
Alignment explanation
Indices: 2752383--2752435 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
2752373 AAGATTTAGT
2752383 ATTTAGGGTTTAAG
1 ATTTAGGGTTTAAG
* *
2752397 ATTTAAGTTTTAAG
1 ATTTAGGGTTTAAG
* **
2752411 ATTTAGTGTTTGTG
1 ATTTAGGGTTTAAG
2752425 ATTTAGGGTTT
1 ATTTAGGGTTT
2752436 GTGATTTGAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (14 bp):
ATTTAGGGTTTAAG
Found at i:2752408 original size:21 final size:19
Alignment explanation
Indices: 2752363--2752410 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
2752353 ATAATTTTCT
2752363 TTTTAAGGTTAAGATTTAG
1 TTTTAAGGTTAAGATTTAG
*
2752382 TATTTAGGGTTTAAGATTTAAG
1 T-TTTAAGG-TTAAGATTT-AG
2752404 TTTTAAG
1 TTTTAAG
2752411 ATTTAGTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 1 0.04
20 6 0.25
21 14 0.58
22 3 0.12
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (19 bp):
TTTTAAGGTTAAGATTTAG
Found at i:2752429 original size:21 final size:21
Alignment explanation
Indices: 2752405--2752472 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
2752395 AGATTTAAGT
2752405 TTTAAGATTTAGTGTTTGTGA
1 TTTAAGATTTAGTGTTTGTGA
* *
2752426 TTTAGGGTTT-GTGATTTGAT-A
1 TTTAAGATTTAGTG-TTTG-TGA
2752447 TTTAA-AGTTTAGTGTTTAG-GA
1 TTTAAGA-TTTAGTGTTT-GTGA
2752468 TTTAA
1 TTTAA
2752473 AATTGAGGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
20 3 0.08
21 29 0.78
22 5 0.14
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (21 bp):
TTTAAGATTTAGTGTTTGTGA
Found at i:2752436 original size:14 final size:14
Alignment explanation
Indices: 2752410--2752442 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
2752400 TAAGTTTTAA
*
2752410 GATTTAGTGTTTGT
1 GATTTAGGGTTTGT
2752424 GATTTAGGGTTTGT
1 GATTTAGGGTTTGT
2752438 GATTT
1 GATTT
2752443 GATATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.30, T:0.55
Consensus pattern (14 bp):
GATTTAGGGTTTGT
Found at i:2752442 original size:42 final size:42
Alignment explanation
Indices: 2752377--2752471 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
2752367 AAGGTTAAGA
*
2752377 TTTAGTATTTAGGGTTTAAGATTTAAGT-TTT-AAGATTTAGTG
1 TTTAGGATTTAGGGTTTAAGATTTAA-TATTTAAAG-TTTAGTG
** *
2752419 TTT-GTGATTTAGGGTTTGTGATTTGATATTTAAAGTTTAGTG
1 TTTAG-GATTTAGGGTTTAAGATTTAATATTTAAAGTTTAGTG
2752461 TTTAGGATTTA
1 TTTAGGATTTA
2752472 AAATTGAGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.04
42 39 0.87
43 4 0.09
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (42 bp):
TTTAGGATTTAGGGTTTAAGATTTAATATTTAAAGTTTAGTG
Found at i:2753959 original size:2 final size:2
Alignment explanation
Indices: 2753936--2754009 Score: 114
Period size: 2 Copynumber: 37.0 Consensus size: 2
2753926 ATTTTACATA
* *
2753936 AT AT AA AT AT AT CAT GT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2753978 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2754010 GCGTGTGTGT
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.02
2 63 0.95
3 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (2 bp):
AT
Found at i:2755713 original size:37 final size:38
Alignment explanation
Indices: 2755672--2755768 Score: 133
Period size: 37 Copynumber: 2.6 Consensus size: 38
2755662 AAACGAAGAG
* *
2755672 GAAAATGGTGAATTAGGGATTGAGATATAAGA-GAAAT
1 GAAAATGGGGAATTAGGGATTGAGATACAAGAGGAAAT
* *
2755709 GAAAATGGGGAATTAGGGATTGAGGTGCAAGAGGGAAAT
1 GAAAATGGGGAATTAGGGATTGAGATACAAGA-GGAAAT
*
2755748 GCAAATGGGGAATTAGGGATT
1 GAAAATGGGGAATTAGGGATT
2755769 TTAGCAAATG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
37 28 0.53
39 25 0.47
ACGTcount: A:0.40, C:0.02, G:0.36, T:0.22
Consensus pattern (38 bp):
GAAAATGGGGAATTAGGGATTGAGATACAAGAGGAAAT
Found at i:2755782 original size:39 final size:38
Alignment explanation
Indices: 2755672--2755782 Score: 111
Period size: 39 Copynumber: 2.9 Consensus size: 38
2755662 AAACGAAGAG
* * * *
2755672 GAAAATGGTGAATTAGGGATTGAG-ATATAAGAGAAAT
1 GAAAATGGGGAATTAGGGATTGAGCAAATGAGGGAAAT
2755709 GAAAATGGGGAATTAGGGATTGAGGTGC-AA-GAGGGAAAT
1 GAAAATGGGGAATTAGGGATTGA---GCAAATGAGGGAAAT
* *
2755748 GCAAATGGGGAATTAGGGATTTTAGCAAATGAGGG
1 GAAAATGGGGAATTAGGGA-TTGAGCAAATGAGGG
2755783 GCGAATGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
37 24 0.39
38 2 0.03
39 30 0.49
40 5 0.08
ACGTcount: A:0.40, C:0.03, G:0.36, T:0.22
Consensus pattern (38 bp):
GAAAATGGGGAATTAGGGATTGAGCAAATGAGGGAAAT
Found at i:2756546 original size:21 final size:21
Alignment explanation
Indices: 2756521--2756568 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
2756511 AAAACTGATG
2756521 AACCTGGAATTCTAAAAGCTA
1 AACCTGGAATTCTAAAAGCTA
2756542 AACCTGGAATTCTAAAAGCTA
1 AACCTGGAATTCTAAAAGCTA
2756563 AACCTG
1 AACCTG
2756569 ATGATTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.23
Consensus pattern (21 bp):
AACCTGGAATTCTAAAAGCTA
Found at i:2760766 original size:39 final size:39
Alignment explanation
Indices: 2760721--2760819 Score: 144
Period size: 39 Copynumber: 2.5 Consensus size: 39
2760711 AAACGAAGAG
* **
2760721 GAAAATGGTGAATTAGGGATTGAGATTTGAAAGAGAAAT
1 GAAAATGGGGAATTAGGGATTGAGATGCGAAAGAGAAAT
* * *
2760760 GAAAATGGGGAATTAGGGATTGAGGTGCGAGAGGGAAAT
1 GAAAATGGGGAATTAGGGATTGAGATGCGAAAGAGAAAT
2760799 GAAAATGGGGAATTAGGGATT
1 GAAAATGGGGAATTAGGGATT
2760820 TTAGCAAATG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.39, C:0.01, G:0.37, T:0.22
Consensus pattern (39 bp):
GAAAATGGGGAATTAGGGATTGAGATGCGAAAGAGAAAT
Found at i:2766616 original size:2 final size:2
Alignment explanation
Indices: 2766611--2766642 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
2766601 TAAAAAAAAC
*
2766611 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2766643 GAAACTATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2767012 original size:44 final size:45
Alignment explanation
Indices: 2766927--2767153 Score: 250
Period size: 44 Copynumber: 5.2 Consensus size: 45
2766917 CGTGGGTTAG
* * * * * *
2766927 GCCAGGTGAAATGCTCTTCGGATGACTCTCCTTCGC-GGGTTTAA
1 GCCATGTGAAATGTTCTTTGGATGACTCCCCTTCACTAGGTTTAA
* **
2766971 GCCATGTGAAATGTTCTTTGGATAACTCCTTTTCACT-GGTTTAA
1 GCCATGTGAAATGTTCTTTGGATGACTCCCCTTCACTAGGTTTAA
* * *
2767015 GCCATATGAAATGTTCTTTGGATGACTCCCCTTC-GTGGGTTTAA
1 GCCATGTGAAATGTTCTTTGGATGACTCCCCTTCACTAGGTTTAA
* * *
2767059 GCCATGTGAAATACTT-TTTGGATGACTCCCCTTCGC-GGGTTTAA
1 GCCATGTGAAAT-GTTCTTTGGATGACTCCCCTTCACTAGGTTTAA
* *
2767103 GCCATGTGAAATGTTCTTCGAATGACTCCCCTTCA-TAGGTTTAA
1 GCCATGTGAAATGTTCTTTGGATGACTCCCCTTCACTAGGTTTAA
2767147 GCCATGT
1 GCCATGT
2767154 AAGTTTTCTT
Statistics
Matches: 156, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
43 3 0.02
44 151 0.97
45 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (45 bp):
GCCATGTGAAATGTTCTTTGGATGACTCCCCTTCACTAGGTTTAA
Found at i:2767087 original size:88 final size:88
Alignment explanation
Indices: 2766933--2767153 Score: 300
Period size: 88 Copynumber: 2.5 Consensus size: 88
2766923 TTAGGCCAGG
* * * *
2766933 TGAAATGCTCTTCGGATGACTCTCCTTCGCGGGTTTAAGCCATGTGAAATGTTCTTTGGATAACT
1 TGAAATGTTCTTCGGATGACTCCCCTTCGTGGGTTTAAGCCATGTGAAATCTTCTTTGGATAACT
** *
2766998 CCTTTTCACTGGTTTAAGCCATA
66 CCCCTTCACGGGTTTAAGCCATA
* *
2767021 TGAAATGTTCTTTGGATGACTCCCCTTCGTGGGTTTAAGCCATGTGAAATACTT-TTTGGATGAC
1 TGAAATGTTCTTCGGATGACTCCCCTTCGTGGGTTTAAGCCATGTGAAAT-CTTCTTTGGATAAC
* *
2767085 TCCCCTTCGCGGGTTTAAGCCATG
65 TCCCCTTCACGGGTTTAAGCCATA
* * *
2767109 TGAAATGTTCTTCGAATGACTCCCCTTCATAGGTTTAAGCCATGT
1 TGAAATGTTCTTCGGATGACTCCCCTTCGTGGGTTTAAGCCATGT
2767154 AAGTTTTCTT
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
88 115 0.98
89 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (88 bp):
TGAAATGTTCTTCGGATGACTCCCCTTCGTGGGTTTAAGCCATGTGAAATCTTCTTTGGATAACT
CCCCTTCACGGGTTTAAGCCATA
Found at i:2767095 original size:132 final size:131
Alignment explanation
Indices: 2766906--2767151 Score: 350
Period size: 132 Copynumber: 1.9 Consensus size: 131
2766896 AGACTTCGGG
* * *
2766906 TGACTCCACTCCGTGGGTTAGGCCAGGTGAAATGCTCTTCGGATGACTCTCCTTCGCGGGTTTAA
1 TGACTCCACTCCGTGGGTTAAGCCAGGTGAAATACTCTTCGGATGACTCCCCTTCGCGGGTTTAA
* * **
2766971 GCCATGTGAAATGTTCTTTGGATAACTCCTTTTCACT-GGTTTAAGCCATATGAAATGTTCTTTG
66 GCCATGTGAAATGTTCTTCGAATAACTCCCCTTCA-TAGGTTTAAGCCATATGAAATGTTCTTTG
2767035 GA
130 GA
* * * * *
2767037 TGACTCCCCTTCGTGGGTTTAAGCCATGTGAAATACTTTTTGGATGACTCCCCTTCGCGGGTTTA
1 TGACTCCACTCCGTGGG-TTAAGCCAGGTGAAATACTCTTCGGATGACTCCCCTTCGCGGGTTTA
*
2767102 AGCCATGTGAAATGTTCTTCGAATGACTCCCCTTCATAGGTTTAAGCCAT
65 AGCCATGTGAAATGTTCTTCGAATAACTCCCCTTCATAGGTTTAAGCCAT
2767152 GTAAGTTTTC
Statistics
Matches: 100, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
131 16 0.16
132 84 0.84
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (131 bp):
TGACTCCACTCCGTGGGTTAAGCCAGGTGAAATACTCTTCGGATGACTCCCCTTCGCGGGTTTAA
GCCATGTGAAATGTTCTTCGAATAACTCCCCTTCATAGGTTTAAGCCATATGAAATGTTCTTTGG
A
Found at i:2772928 original size:14 final size:14
Alignment explanation
Indices: 2772909--2772938 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2772899 ATAGAGAATG
2772909 GTGATGGAAAGATA
1 GTGATGGAAAGATA
*
2772923 GTGATGGAAAGGTA
1 GTGATGGAAAGATA
2772937 GT
1 GT
2772939 ATCTTATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.40, T:0.23
Consensus pattern (14 bp):
GTGATGGAAAGATA
Found at i:2773303 original size:19 final size:20
Alignment explanation
Indices: 2773262--2773312 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
2773252 GAAACCCCTT
*
2773262 TGAAAATACATGATTTTTTA
1 TGAAAATACATGATTTTTAA
2773282 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
2773301 TGAAGATACATG
1 TGAAAATACATG
2773313 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:2775681 original size:16 final size:17
Alignment explanation
Indices: 2775660--2775693 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
2775650 GTTAAAGAAC
2775660 CAAGTTATA-ATTTTGA
1 CAAGTTATACATTTTGA
2775676 CAAGTTATACATTTTGA
1 CAAGTTATACATTTTGA
2775693 C
1 C
2775694 CCCGTAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (17 bp):
CAAGTTATACATTTTGA
Found at i:2777473 original size:14 final size:15
Alignment explanation
Indices: 2777454--2777482 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2777444 CCATGGGTAT
2777454 TAATATTG-TACCAA
1 TAATATTGATACCAA
2777468 TAATATTGATACCAA
1 TAATATTGATACCAA
2777483 CCCCTTGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (15 bp):
TAATATTGATACCAA
Found at i:2778922 original size:22 final size:22
Alignment explanation
Indices: 2778897--2778966 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
2778887 AAATGCCTTG
2778897 GTATCAATACTCTA-ATGGTGGA
1 GTATCAATACTCTACATGG-GGA
* * *
2778919 GTATCGATACTCTACCTTGGGA
1 GTATCAATACTCTACATGGGGA
* * *
2778941 GTATTAATACTCTACCTTGGGA
1 GTATCAATACTCTACATGGGGA
2778963 GTAT
1 GTAT
2778967 AGATACCATG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
22 40 0.95
23 2 0.05
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (22 bp):
GTATCAATACTCTACATGGGGA
Found at i:2778972 original size:22 final size:22
Alignment explanation
Indices: 2778916--2778972 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
2778906 CTCTAATGGT
*
2778916 GGAGTATCGATACTCTACCTTG
1 GGAGTATAGATACTCTACCTTG
2778938 GGAGTATTA-ATACTCTACCTTG
1 GGAGTA-TAGATACTCTACCTTG
2778960 GGAGTATAGATAC
1 GGAGTATAGATAC
2778973 CATGTTTTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 2 0.06
22 29 0.91
23 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (22 bp):
GGAGTATAGATACTCTACCTTG
Found at i:2785019 original size:20 final size:20
Alignment explanation
Indices: 2784994--2785034 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
2784984 TTCATAAATC
2784994 TATTTC-TTTAATTCATTTCT
1 TATTTCATTTAA-TCATTTCT
2785014 TATTTCATTTAATCATTTCT
1 TATTTCATTTAATCATTTCT
2785034 T
1 T
2785035 TCATTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.22, C:0.15, G:0.00, T:0.63
Consensus pattern (20 bp):
TATTTCATTTAATCATTTCT
Found at i:2792374 original size:11 final size:11
Alignment explanation
Indices: 2792358--2792382 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
2792348 TTTGGAGTAC
2792358 AAAAAGAAAAG
1 AAAAAGAAAAG
2792369 AAAAAGAAAAG
1 AAAAAGAAAAG
2792380 AAA
1 AAA
2792383 GAATTCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:2805390 original size:360 final size:360
Alignment explanation
Indices: 2804728--2805410 Score: 1228
Period size: 360 Copynumber: 1.9 Consensus size: 360
2804718 TCAAGATAAC
2804728 ACGATTAGAATAAAATAAACAAAAGATAAATAAACTGAAGATGAAATAAGATAATAAAGAAATCA
1 ACGATTAGAATAAAATAAACAAAAGATAAATAAACTGAAGATGAAATAAGATAATAAAGAAATCA
*
2804793 AAAGATCTCCCTTATGAAGGTGAACGGTAAAAGTGATTGATGGTGCGGATGGATTTGTGGAAAAA
66 AAAGATCTCCCTTAGGAAGGTGAACGGTAAAAGTGATTGATGGTGCGGATGGATTTGTGGAAAAA
*
2804858 TAGATGGATAAGTGTCCTATCGAGCCTTCCTAGTCGCAATAAAAAGGAAAACACGATAAATGGCT
131 TAGATGGATAAGTGTCCTATCGAGCCCTCCTAGTCGCAATAAAAAGGAAAACACGATAAATGGCT
*
2804923 CTAACCAACCCTCCTAGTCATGATGAAAAGGCAAATTGGAGTGTGAAGATTAATCTCCCTCACAA
196 CTAACCAACCCTCCTAGTCACGATGAAAAGGCAAATTGGAGTGTGAAGATTAATCTCCCTCACAA
* * *
2804988 GAACTTGAAAGAACTCCAGGAGAAGAAGCTTCGAAGGCACAAGGCAATCAGCACTTGCAAAAACA
261 GAACTTGAAAGAACTCCAGGAAAAGAAGCTTCGAAAGCACAAGGCAATCAACACTTGCAAAAACA
2805053 AAGGTGATGAATATGGGAAGGTGGCGGCAGTCGCT
326 AAGGTGATGAATATGGGAAGGTGGCGGCAGTCGCT
*
2805088 ACGATTAGAATAAAATAAACAAAATATAAATAAA-TGAAAGATGAAATAAGATAATAAAGAAATC
1 ACGATTAGAATAAAATAAACAAAAGATAAATAAACTG-AAGATGAAATAAGATAATAAAGAAATC
2805152 AAAAGATCTCCCTTAGGAAGGTGAACGGT-AAAGATGATTGATGGTGCGGATGGATTTGTGGAAA
65 AAAAGATCTCCCTTAGGAAGGTGAACGGTAAAAG-TGATTGATGGTGCGGATGGATTTGTGGAAA
* *
2805216 AATAGATGGATAAGTGTCCTATCGAGCCCTCCTAGTCGCAATGAAAAGGCAAACACGATAAATGG
129 AATAGATGGATAAGTGTCCTATCGAGCCCTCCTAGTCGCAATAAAAAGGAAAACACGATAAATGG
*
2805281 CTCTAACCAACCCTCCTAGTCGCGATGAAAAGGCAAATTGGAGTGTGAAGATTAATCTCCCTCAC
194 CTCTAACCAACCCTCCTAGTCACGATGAAAAGGCAAATTGGAGTGTGAAGATTAATCTCCCTCAC
2805346 AAGAACTTGAAAGAAC-CCAAGGAAAAGAAGCTTCGAAAGCACAAGGCAATCAACACTTGCAAAA
259 AAGAACTTGAAAGAACTCC-AGGAAAAGAAGCTTCGAAAGCACAAGGCAATCAACACTTGCAAAA
2805410 A
323 A
2805411 TGAACTCTCG
Statistics
Matches: 310, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
359 8 0.03
360 302 0.97
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (360 bp):
ACGATTAGAATAAAATAAACAAAAGATAAATAAACTGAAGATGAAATAAGATAATAAAGAAATCA
AAAGATCTCCCTTAGGAAGGTGAACGGTAAAAGTGATTGATGGTGCGGATGGATTTGTGGAAAAA
TAGATGGATAAGTGTCCTATCGAGCCCTCCTAGTCGCAATAAAAAGGAAAACACGATAAATGGCT
CTAACCAACCCTCCTAGTCACGATGAAAAGGCAAATTGGAGTGTGAAGATTAATCTCCCTCACAA
GAACTTGAAAGAACTCCAGGAAAAGAAGCTTCGAAAGCACAAGGCAATCAACACTTGCAAAAACA
AAGGTGATGAATATGGGAAGGTGGCGGCAGTCGCT
Found at i:2818199 original size:2 final size:2
Alignment explanation
Indices: 2818192--2818232 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
2818182 TGGCAGTGGA
2818192 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2818233 GTTGGTGATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.