genome.fa.s5607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005607.1 Hibiscus syriacus cultivar Beakdansim tig00013041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63578

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2117--2204	40	2.2	39	87	2	122	39	13	17	29	1.88
6489--6766	82	3.4	81	86	5	375	33	15	14	36	1.89
11608--11642	2	17.5	2	100	0	70	48	0	0	51	1.00
11917--11975	30	1.9	32	89	6	95	61	3	6	28	1.38
13403--13708	49	6.2	48	75	9	233	34	13	19	31	1.91
13403--13708	101	3.1	97	87	5	420	34	13	19	31	1.91
18124--18199	39	2.1	35	81	13	84	35	32	7	23	1.84
21416--21470	23	2.4	23	82	8	60	50	1	0	47	1.11
21497--21603	34	3.3	34	81	8	91	35	6	0	57	1.24
21539--21642	29	3.5	30	84	9	133	32	6	0	60	1.23
21529--21612	29	2.6	34	76	21	99	32	5	0	61	1.20
21539--21682	59	2.5	59	80	9	138	35	6	0	57	1.26
21591--21670	30	2.7	29	81	9	90	36	6	0	57	1.24
21687--21734	9	5.0	9	78	14	51	37	0	0	62	0.95
21687--21744	28	2.1	27	81	12	64	32	1	0	65	1.03
26442--26482	20	2.0	20	85	0	55	36	19	26	17	1.94
27588--27629	19	2.2	20	83	12	52	69	0	0	30	0.89
27603--27645	12	3.4	12	75	12	50	74	0	0	25	0.82
27588--27646	21	2.6	23	73	10	59	71	0	0	28	0.87
32796--32837	19	2.2	19	95	0	75	50	21	11	16	1.77
32919--32981	22	2.9	22	80	15	69	82	3	14	0	0.79
32926--32981	7	7.9	7	80	11	69	82	3	14	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32916--32981	8	7.8	8	80	8	69	83	3	13	0	0.76
32915--32987	26	2.8	27	78	15	82	82	4	13	0	0.81
33706--33911	75	2.7	76	85	5	249	21	22	32	23	1.98
34520--34563	17	2.6	17	85	7	63	56	29	0	13	1.38
34515--34565	9	6.2	8	78	17	52	58	27	0	13	1.36
41968--42176	76	2.8	76	81	5	246	21	23	30	23	1.99
43557--43771	61	3.4	62	82	9	267	26	15	16	41	1.88
43873--44230	134	2.7	131	81	5	400	26	32	16	24	1.96
45829--45868	15	2.9	15	82	14	50	20	0	0	80	0.72
45972--46067	35	2.9	33	75	13	90	27	13	4	55	1.57
48151--48239	34	2.6	35	80	5	92	34	13	10	41	1.78
48178--48244	17	3.9	17	90	0	98	37	13	7	41	1.73
50874--50923	26	1.9	26	88	8	75	46	0	6	48	1.27
50877--50953	11	7.4	11	73	14	56	45	2	6	45	1.43
51025--51057	9	3.8	9	88	8	50	54	3	6	36	1.41
51111--51187	15	5.1	14	73	16	66	46	6	3	42	1.48
51160--51290	25	5.2	25	67	16	72	46	3	7	41	1.50
51516--51710	77	2.3	83	75	18	190	41	7	9	41	1.65
51582--51758	20	8.9	20	69	22	99	42	7	7	42	1.60
51523--51691	37	4.4	37	74	14	121	42	7	8	41	1.65
51799--51846	21	2.3	21	88	0	69	41	6	6	45	1.54
51857--51907	15	3.3	15	71	15	50	41	3	1	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51886--52018	36	3.9	36	77	11	152	44	3	7	44	1.50
51815--52001	89	2.1	88	81	9	213	41	4	6	47	1.48
51971--52029	24	2.4	26	81	16	81	49	1	5	44	1.34
51982--52070	40	2.4	36	83	11	99	46	4	4	44	1.44
52199--52227	15	1.9	15	100	0	58	48	3	0	48	1.18
52194--52254	21	3.0	20	81	11	61	47	1	0	50	1.10
52214--52279	27	2.6	24	83	7	78	48	0	1	50	1.10
52197--52256	15	4.2	15	72	12	54	48	1	0	50	1.11
52749--52883	18	7.6	18	76	5	96	43	42	5	8	1.58
52766--52883	6	19.7	6	75	0	92	44	42	5	7	1.57
52766--52887	24	5.1	24	76	4	111	45	40	5	8	1.58
52784--52883	30	3.3	30	87	0	137	44	42	6	8	1.58
56318--56395	24	3.3	24	98	1	149	48	8	0	42	1.34
56326--56390	12	5.3	13	67	25	52	50	7	0	41	1.31
56622--56652	16	1.9	16	100	0	62	38	9	25	25	1.86
57295--57476	90	2.0	91	96	1	339	36	11	18	32	1.87
62463--62505	23	1.9	22	86	13	61	39	13	6	39	1.72
62463--62504	21	2.0	22	90	4	68	38	14	7	40	1.73

Tables:   1

The End!