Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005608.1 Hibiscus syriacus cultivar Beakdansim tig00013042_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106494

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8139--8214
35
2.2
35
90
0
116
39
22
1
36
1.63
8600--8846
130
1.9
129
90
0
395
36
14
12
36
1.84
9171--9231
26
2.3
26
82
5
68
45
1
3
49
1.28
9309--9342
16
2.0
18
88
11
54
64
5
2
26
1.30
12494--12523
14
2.1
14
93
0
51
10
13
23
53
1.69
12493--12540
24
2.0
24
83
0
60
14
14
18
52
1.75
13605--13658
16
3.4
16
97
0
99
7
14
24
53
1.66
15763--15796
14
2.3
15
90
5
52
52
23
0
23
1.47
17256--17427
54
3.2
54
87
4
224
23
26
23
27
2.00
19989--20021
16
2.1
16
100
0
66
57
24
12
6
1.57
20082--20122
16
2.7
16
85
7
50
60
14
9
14
1.57
21226--21264
14
3.1
14
72
27
50
51
25
15
7
1.70
21216--21264
24
2.0
24
92
0
80
51
22
16
10
1.74
25787--25828
19
2.2
19
91
0
66
45
21
7
26
1.77
25807--25906
38
2.6
38
91
0
155
42
23
5
30
1.75
25799--25912
18
6.0
18
66
15
61
41
22
5
30
1.76
25800--25913
19
6.0
19
66
15
65
41
23
5
29
1.76
27953--28000
25
1.9
25
100
0
96
25
25
25
25
2.00
29345--29390
21
2.2
21
84
0
56
19
45
26
8
1.79
31343--31397
27
2.0
27
96
0
101
30
0
3
65
1.10
32149--32211
21
3.0
21
83
2
81
17
39
26
15
1.90
34099--34144
23
2.0
24
86
4
67
26
2
0
71
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35683--35745
31
2.0
31
84
0
81
36
14
28
20
1.92
37948--37994
15
3.4
15
72
22
57
23
6
40
29
1.79
37944--37997
26
2.1
26
100
0
108
24
7
42
25
1.80
47741--47844
44
2.4
43
82
4
111
20
17
18
44
1.87
50056--50160
39
2.7
38
80
10
115
28
18
20
32
1.96
50103--50387
83
3.5
83
79
4
319
32
18
17
31
1.94
50095--50420
82
4.0
83
76
5
306
32
17
17
32
1.93
50103--50402
164
1.8
164
83
4
399
32
18
16
32
1.93
51147--51237
26
3.5
26
67
15
71
40
3
6
49
1.45
58021--58065
21
2.1
21
100
0
90
22
11
4
62
1.46
58027--58072
21
2.2
21
88
0
65
30
10
4
54
1.55
59041--59084
23
1.9
23
95
0
79
22
20
25
31
1.98
59078--59114
17
2.2
17
100
0
74
27
32
16
24
1.96
59042--59093
11
4.6
11
85
4
68
25
23
23
28
1.99
59894--59981
33
2.7
33
92
0
149
42
17
12
28
1.85
59894--59994
33
3.1
30
82
13
112
39
17
12
29
1.87
61776--61920
69
2.1
69
100
0
290
28
17
1
53
1.52
62027--62065
17
2.4
17
95
4
71
61
0
0
38
0.96
62460--62522
11
5.9
11
75
14
69
41
1
0
57
1.08
65108--65155
24
1.9
26
87
8
73
29
20
12
37
1.90
69181--69231
3
17.0
3
100
0
102
66
0
0
33
0.92
73393--73471
6
13.2
6
100
0
158
50
32
16
0
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79056--79824
112
6.9
111
84
7
877
28
19
15
36
1.92
79056--79803
224
3.3
224
88
2
1074
28
19
15
37
1.92
78938--79829
336
2.6
336
86
4
1150
27
19
15
37
1.92
83618--83667
12
3.9
12
75
14
55
60
8
10
22
1.55
83610--83665
27
2.1
27
86
6
78
62
7
10
19
1.50
83624--83653
15
2.0
15
93
0
51
66
10
6
16
1.41
83725--83766
7
6.0
7
78
10
50
57
11
16
14
1.66
85259--85316
28
2.1
28
84
6
75
60
1
5
32
1.29
85787--85822
2
19.5
2
83
16
51
50
0
0
50
1.00
86998--87121
44
2.9
43
81
7
139
19
14
42
23
1.88
91203--91244
21
2.0
21
90
9
68
47
21
0
30
1.51
95273--95343
38
1.9
38
83
13
96
54
7
8
29
1.57
98253--98295
19
2.2
20
84
12
54
46
0
0
53
1.00
102036--102065
10
3.1
10
90
9
53
40
0
0
60
0.97
103092--103133
3
14.7
3
90
9
70
64
0
0
35
0.94
103094--103133
11
3.5
11
83
16
55
65
0
0
35
0.93
103092--103135
14
3.1
14
100
0
88
63
0
0
36
0.95
103092--103133
17
2.5
17
92
7
68
64
0
0
35
0.94

Tables:   1

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