Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005609.1 Hibiscus syriacus cultivar Beakdansim tig00013043_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87283

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1459--1540
31
2.5
32
80
14
89
53
10
7
28
1.62
3783--3814
16
1.9
17
93
6
57
65
3
0
31
1.08
4372--4409
19
2.1
18
85
14
51
42
0
2
55
1.14
6321--6371
19
2.7
19
81
0
57
23
13
13
49
1.78
8739--8765
3
9.0
3
100
0
54
66
0
0
33
0.92
26277--26327
27
1.9
27
88
4
77
17
21
27
33
1.96
30224--30283
28
2.2
26
80
11
68
48
3
1
46
1.28
30237--30308
28
2.6
27
80
12
76
47
1
0
51
1.09
30237--30296
26
2.3
28
80
13
74
46
1
0
51
1.10
30259--30335
39
2.0
40
89
2
120
49
2
0
48
1.15
30282--30340
17
3.4
17
73
15
57
54
3
0
42
1.17
30262--30381
39
3.0
37
77
12
98
52
1
0
45
1.10
30314--30363
8
6.2
8
77
9
57
60
2
0
38
1.09
30332--30361
15
2.0
15
93
0
51
63
0
0
36
0.95
30469--30535
34
2.0
33
88
2
98
53
1
2
41
1.25
30466--30550
34
2.8
33
81
16
96
55
1
3
40
1.25
32999--33028
3
10.0
3
100
0
60
66
0
0
33
0.92
35663--35695
2
16.5
2
100
0
66
51
0
0
48
1.00
35696--35729
16
2.1
16
94
0
59
41
20
11
26
1.87
39007--39087
2
40.5
2
100
0
162
49
0
0
50
1.00
41850--41897
22
2.2
22
81
7
53
31
0
2
66
1.03
50206--50339
72
1.9
72
91
0
223
26
19
17
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50885--50937
2
26.0
2
96
3
97
49
0
1
49
1.12
52183--52227
21
2.1
21
87
0
63
31
28
24
15
1.96
53917--53983
22
3.0
22
95
2
116
19
26
28
25
1.99
57117--57161
21
2.1
21
87
0
63
31
28
24
15
1.96
58857--58923
22
3.0
22
95
2
116
19
26
28
25
1.99
62055--62099
21
2.1
21
87
0
63
31
28
24
15
1.96
63796--63862
22
3.0
22
95
2
116
19
26
28
25
1.99
64960--65005
23
2.0
21
88
12
65
50
4
0
45
1.21
65137--65551
221
1.9
221
85
2
571
30
13
11
44
1.79
70518--70548
14
2.1
15
94
5
55
38
0
0
61
0.96
74439--74479
19
2.1
20
90
4
66
41
12
4
41
1.64
76339--76378
20
2.0
21
95
5
73
25
20
22
32
1.98
77263--77322
25
2.3
26
97
2
113
50
10
15
25
1.74
79291--79343
22
2.4
22
83
0
70
54
3
1
39
1.29
83302--83366
31
2.1
31
82
0
76
29
13
13
43
1.83

Tables:   1

The End!