Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005610.1 Hibiscus syriacus cultivar Beakdansim tig00013046_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79861

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7479--7508
13
2.3
13
94
0
51
13
26
0
60
1.34
9556--9586
16
2.0
16
93
6
55
29
0
45
25
1.54
25922--25969
18
2.6
17
83
9
51
68
4
2
25
1.18
25917--25962
22
2.2
22
80
7
60
69
4
2
23
1.17
25987--26021
17
2.1
17
88
0
52
71
5
5
17
1.25
26074--26121
19
2.5
19
70
16
53
66
0
8
25
1.19
27334--27366
16
2.1
16
94
5
59
75
12
0
12
1.04
27442--27498
23
2.4
23
94
2
96
40
10
3
45
1.56
27465--27708
39
6.4
39
77
11
202
40
10
5
43
1.62
27465--27708
77
3.2
73
78
11
222
40
10
5
43
1.62
28538--28595
3
19.7
3
96
3
109
31
0
0
68
0.89
31866--31941
36
2.1
36
87
0
107
59
19
3
17
1.53
32348--32428
39
2.1
39
86
4
110
37
4
9
48
1.58
32536--32586
25
2.1
24
82
7
59
19
5
31
43
1.75
34346--34734
184
2.1
185
93
1
658
41
3
8
45
1.53
40981--41127
7
20.9
7
74
16
108
42
2
4
51
1.35
40967--41126
2
82.0
2
68
26
87
42
3
4
50
1.38
40967--41127
15
12.0
14
73
20
107
42
3
4
50
1.38
41019--41098
40
2.0
40
88
9
119
42
1
6
50
1.35
40986--41094
55
1.9
57
84
14
147
42
2
5
49
1.40
46334--46375
3
14.0
3
100
0
84
66
0
0
33
0.92
46584--47269
133
5.1
133
86
2
914
24
16
31
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47627--47671
2
22.5
2
100
0
90
51
0
0
48
1.00
48745--48903
68
2.4
68
79
11
168
44
12
17
25
1.84
48781--48913
68
2.0
67
85
7
180
41
10
18
29
1.84
49116--49186
36
2.0
36
88
0
106
33
12
23
29
1.92
49118--49196
36
2.2
36
81
0
86
35
13
21
29
1.92
54810--54868
22
2.9
20
80
7
66
69
1
5
23
1.18
56333--56358
3
8.7
3
100
0
52
65
0
0
34
0.93
56326--56374
9
5.3
10
78
11
52
63
2
0
34
1.06
56407--56569
2
86.0
2
71
19
118
43
1
3
50
1.30
56987--57035
20
2.5
20
96
0
89
42
16
32
8
1.77
57809--57854
21
2.2
20
85
11
58
28
4
0
67
1.10
57798--57854
20
2.8
21
82
10
66
29
5
0
64
1.15
58654--58696
21
2.0
23
86
9
63
55
4
9
30
1.52
60888--60964
31
2.4
32
85
10
95
61
1
0
37
1.05
60889--60970
32
2.4
33
78
19
80
59
2
0
37
1.11
62686--62720
15
2.3
15
95
0
61
42
2
0
54
1.15
66511--66597
18
4.6
18
78
9
84
29
13
26
29
1.94
76337--76379
15
2.9
15
77
16
54
60
0
16
23
1.35
76338--76403
29
2.2
29
81
7
71
60
0
16
22
1.35
78216--78477
138
1.9
139
80
6
307
42
10
19
27
1.84
78209--78471
71
3.8
70
76
8
257
42
11
19
27
1.85
78550--78641
38
2.5
38
85
3
134
41
10
15
32
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78550--78628
36
2.1
36
90
4
122
44
10
12
32
1.76

Tables:   1

The End!