Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005611.1 Hibiscus syriacus cultivar Beakdansim tig00013048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63656

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5656--5699
17
2.5
17
88
3
61
70
0
6
22
1.11
6275--6432
73
2.2
73
82
10
180
54
13
1
31
1.47
10227--10277
3
17.0
3
90
8
77
29
0
1
68
1.00
16232--16336
3
35.0
3
94
3
185
33
0
1
64
1.04
17213--17310
32
3.1
32
80
7
110
37
13
16
32
1.87
17213--17307
47
2.0
47
85
4
129
36
12
16
33
1.87
24551--24591
18
2.3
18
91
0
64
58
0
2
39
1.11
28344--28393
20
2.5
20
80
6
57
26
30
18
26
1.98
31168--31612
116
3.8
115
79
3
460
41
15
18
25
1.89
31170--31607
232
1.9
232
82
3
538
41
15
18
24
1.88
31923--31978
22
2.5
24
80
13
66
33
1
7
57
1.37
42567--42772
103
2.0
103
96
0
376
32
19
20
27
1.97
47449--47506
12
4.8
12
75
12
64
44
5
6
43
1.53
47398--47599
37
5.7
36
77
17
190
48
2
7
41
1.46
47478--47543
30
2.2
30
94
2
116
45
3
7
43
1.47
47405--47599
105
1.9
103
84
6
259
47
3
7
41
1.48
48761--48805
4
11.0
4
86
13
65
22
2
2
73
1.05
48898--48933
10
3.5
10
88
7
54
25
0
0
75
0.81
48886--48933
21
2.2
22
88
3
71
22
2
2
72
1.05
48905--48939
16
2.1
17
89
5
54
20
2
0
77
0.90
48981--49028
2
24.0
2
100
0
96
50
0
0
50
1.00
51826--51888
30
2.1
29
85
8
83
33
14
26
25
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59938--60439
253
2.0
256
92
2
834
35
18
12
33
1.89

Tables:   1

The End!