Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005612.1 Hibiscus syriacus cultivar Beakdansim tig00013049_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40050

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
368--579
86
2.4
90
86
10
276
24
19
27
28
1.98
436--569
43
3.1
42
68
13
121
24
19
26
29
1.98
12241--12278
13
2.8
14
80
4
51
71
5
2
21
1.19
19035--19136
37
2.8
37
81
0
123
42
14
11
31
1.82
19557--19601
20
2.2
21
84
11
58
26
2
0
71
0.98
19611--19667
24
2.4
24
79
8
62
31
1
0
66
1.02
19842--19885
2
22.5
2
86
4
63
45
2
0
52
1.13
24354--24401
14
3.3
15
77
16
57
79
4
16
0
0.89
24354--24413
29
2.1
28
82
14
70
78
5
15
1
1.00
24354--24413
27
2.1
29
84
6
79
78
5
15
1
1.00
25015--25069
22
2.5
22
96
0
101
38
27
10
23
1.88
25483--25520
18
2.1
19
95
5
69
21
5
31
42
1.75
26030--27304
106
12.0
106
91
0
1942
34
24
17
22
1.96
28020--28124
37
2.8
37
83
0
138
40
14
12
33
1.83
28539--28585
15
3.4
14
77
19
53
27
0
0
72
0.85
28539--28585
23
2.0
23
88
8
69
27
0
0
72
0.85
28640--28689
14
3.3
14
79
17
55
18
8
4
70
1.28
28790--28890
22
4.5
23
76
14
86
29
3
0
65
1.17
28987--29042
20
2.9
19
75
19
62
23
7
1
67
1.24
29944--29986
22
2.0
22
95
0
77
13
32
25
27
1.94
29947--29994
22
2.2
22
88
0
69
14
31
25
29
1.95
34674--34707
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!