genome.fa.s5615.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005615.1 Hibiscus syriacus cultivar Beakdansim tig00013061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113915

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51--231	90	2.0	90	95	0	326	34	15	21	28	1.94
1835--2365	53	10.3	54	83	9	671	30	21	15	33	1.94
1835--2365	156	3.4	157	85	6	705	30	21	15	33	1.94
6880--6907	8	3.5	8	100	0	56	21	0	0	78	0.75
7272--7313	22	1.9	22	85	9	59	47	2	0	50	1.14
7288--7329	17	2.3	17	88	12	57	47	2	0	50	1.14
7337--7391	17	3.2	17	78	16	53	21	1	1	74	1.01
9575--9670	48	2.0	48	93	0	165	43	13	10	32	1.78
9899--9978	17	4.6	17	79	18	85	80	2	16	1	0.90
9899--9960	18	3.6	17	81	16	74	82	3	14	0	0.80
9908--9957	13	4.2	12	75	17	50	84	4	12	0	0.76
9897--9983	42	2.0	45	86	10	128	79	3	16	1	0.93
9910--9981	12	5.6	14	78	15	59	79	2	16	1	0.93
10897--10973	25	3.1	25	84	3	93	35	16	1	46	1.56
13095--13130	18	2.0	18	89	10	56	36	41	22	0	1.54
14399--14458	21	2.9	20	78	11	59	26	5	0	68	1.10
20793--20902	39	2.8	40	71	15	102	30	10	27	32	1.89
22278--22583	168	1.8	168	87	3	454	37	14	15	32	1.88
22852--22897	3	15.3	3	100	0	92	32	0	0	67	0.91
26020--26061	11	3.5	12	79	20	52	80	2	14	2	0.90
26024--26089	30	2.3	28	84	5	78	74	4	15	6	1.18
26017--26083	28	2.5	26	70	15	64	71	4	14	8	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32291--32320	2	15.0	2	100	0	60	50	0	0	50	1.00
32875--32933	13	4.4	13	72	19	50	32	1	1	64	1.13
45799--45875	32	2.6	29	83	10	93	40	11	1	46	1.48
45825--45883	28	2.1	28	87	0	82	40	13	1	44	1.54
46026--46060	16	2.1	17	94	5	63	77	0	8	14	0.99
46117--46145	3	9.7	3	100	0	58	65	0	0	34	0.93
47643--47690	23	2.1	23	88	0	69	35	12	18	33	1.89
48166--48238	23	3.2	23	90	0	101	39	20	4	35	1.72
48175--48239	23	2.8	23	92	0	103	36	21	3	38	1.69
47764--49565	489	3.7	491	98	0	3454	40	10	7	41	1.69
48655--48727	23	3.2	23	90	0	110	41	19	5	34	1.74
49146--49218	23	3.2	23	92	0	119	38	21	5	34	1.77
52059--54280	183	12.1	183	95	1	3846	33	16	14	35	1.89
55482--55559	9	8.7	9	81	0	84	24	33	7	34	1.84
55486--55576	12	7.3	12	81	7	92	21	32	8	36	1.85
55513--55576	18	3.6	18	84	0	83	18	32	10	37	1.86
55482--55559	6	13.0	6	86	0	84	24	33	7	34	1.84
57083--57815	200	3.7	200	96	0	1335	30	17	14	37	1.90
57083--57815	399	1.8	400	96	0	1362	30	17	14	37	1.90
57922--57982	19	3.3	18	88	2	59	52	11	1	34	1.47
57934--57982	19	2.6	19	96	0	89	55	10	2	32	1.45
59730--59795	33	2.0	33	90	0	105	22	48	0	28	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59829--59893	21	3.1	21	93	0	103	16	30	10	41	1.83
61917--61969	24	2.2	24	86	6	72	26	7	11	54	1.62
62109--62169	20	3.2	18	80	15	61	19	16	8	55	1.65
62295--62341	20	2.3	20	89	10	78	17	19	8	55	1.67
62081--62552	181	2.6	181	88	3	657	26	16	13	42	1.86
64371--64413	20	2.2	20	87	4	61	34	9	6	48	1.62
64746--64785	14	2.9	14	85	3	55	22	42	0	35	1.54
65436--65470	16	2.1	16	89	10	52	22	11	0	65	1.24
68512--68552	20	2.1	19	86	4	55	34	7	7	51	1.58
68887--68926	14	2.9	14	85	3	55	22	42	0	35	1.54
69134--69212	36	2.2	36	95	0	140	30	12	5	51	1.61
79131--79165	17	2.1	17	100	0	70	22	5	34	37	1.78
85770--86451	4	171.0	4	99	0	1341	24	0	24	50	1.50
86457--86675	2	109.5	2	69	16	125	43	6	3	46	1.46
89503--89591	30	2.9	30	83	8	117	46	5	1	47	1.33
93829--94315	179	2.7	175	78	6	514	40	8	11	39	1.72
93829--94486	360	1.8	359	78	5	747	39	8	9	41	1.68
94484--94622	62	2.3	63	79	8	153	43	13	5	37	1.68
99427--99554	62	2.1	62	92	1	213	40	14	21	22	1.90
100137--100181	22	2.0	22	86	0	63	71	4	0	24	1.05
101208--101249	3	14.0	3	89	0	66	28	0	4	66	1.12
101327--101371	24	1.9	23	86	4	63	31	0	4	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105071--105122	22	2.3	23	76	6	61	46	5	3	44	1.45
105622--105754	65	2.1	64	83	7	162	50	8	4	36	1.53
105622--105754	33	4.1	32	77	7	126	50	8	4	36	1.53
105634--105754	66	1.9	63	84	8	163	51	8	4	36	1.51
109103--109141	17	2.2	18	90	4	62	61	0	0	38	0.96

Tables:   1

The End!