genome.fa.s5616.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005616.1 Hibiscus syriacus cultivar Beakdansim tig00013063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56536

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1369--1652	140	2.0	139	87	2	408	41	4	20	33	1.74
4272--4305	2	17.0	2	100	0	68	50	0	0	50	1.00
4528--4568	20	2.0	20	86	9	57	34	14	7	43	1.73
7508--7605	18	5.2	18	65	18	65	52	13	7	27	1.66
7502--7617	38	3.1	38	97	0	223	50	12	7	28	1.68
7797--7971	46	3.8	46	78	6	183	36	14	12	37	1.83
8540--8640	6	16.8	6	90	0	157	36	31	12	18	1.89
10687--10730	23	1.9	23	90	0	70	29	2	2	65	1.16
18138--18752	38	15.8	38	81	5	710	25	18	17	38	1.92
18138--18752	118	5.3	113	82	5	701	25	18	17	38	1.92
18719--19024	45	6.6	43	74	14	220	21	17	17	43	1.88
18844--19030	45	4.2	46	84	6	224	19	16	18	45	1.86
19028--19702	134	5.0	134	87	1	902	29	19	18	32	1.96
19028--19702	269	2.5	268	86	1	933	29	19	18	32	1.96
19727--19757	14	2.1	15	94	5	55	35	9	6	48	1.62
25950--26018	23	3.0	23	82	0	57	30	26	24	18	1.98
27577--27624	21	2.3	21	100	0	96	37	8	20	33	1.83
27979--28008	13	2.3	13	94	0	51	53	6	6	33	1.53
31724--31808	36	2.3	35	78	9	89	52	1	3	42	1.26
31933--31970	20	1.9	20	88	0	58	21	26	10	42	1.85
32425--32480	21	2.7	21	94	0	94	19	26	19	33	1.96
32484--32580	20	4.8	20	89	0	149	40	17	18	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32567--32618	20	2.6	20	100	0	104	30	25	21	23	1.99
32484--32600	40	2.9	39	87	7	148	38	18	18	23	1.93
33166--33214	20	2.5	20	86	0	71	34	24	20	20	1.96
33235--33311	20	3.9	20	82	1	84	16	16	22	44	1.87
33278--33321	20	2.2	20	87	0	61	13	13	20	52	1.74
34927--35036	35	3.1	35	86	0	139	36	0	20	41	1.59
36190--36296	20	5.6	20	77	14	127	40	21	20	17	1.92
36193--36311	55	2.2	54	90	1	184	41	21	21	16	1.91
36268--36332	19	3.6	19	74	21	59	41	18	21	18	1.90
36344--36407	20	3.2	20	93	0	101	21	20	21	35	1.96
36894--36935	21	2.2	19	87	12	59	21	35	19	23	1.96
38426--38554	33	3.8	33	86	2	168	42	17	24	16	1.88
38720--38824	33	3.2	33	95	1	183	43	19	24	12	1.85
38319--39061	270	2.7	270	97	0	1405	35	13	20	30	1.92
38729--38829	19	5.8	19	68	23	87	44	18	23	12	1.85
38966--39061	33	2.8	33	90	3	138	41	20	23	13	1.88
38999--39066	19	3.8	19	72	21	74	45	19	22	13	1.84
39070--39151	33	2.5	33	83	2	101	15	23	19	41	1.90
39123--39211	20	4.4	20	88	2	135	17	22	24	34	1.96
41645--41698	24	2.2	24	90	0	81	40	18	18	22	1.91
42562--42601	20	2.0	20	85	9	55	25	20	20	35	1.96
43865--43995	44	3.0	43	71	11	124	27	5	7	59	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43884--44009	44	2.8	43	75	10	121	26	4	7	61	1.43
43865--44054	89	2.2	85	78	8	186	25	9	8	56	1.59
43985--44306	43	7.5	42	78	11	262	26	18	6	48	1.73
43933--44306	43	8.7	42	75	11	246	25	16	7	50	1.71
44045--44110	21	3.1	21	66	22	57	24	19	6	50	1.70
44623--44718	47	2.0	47	95	0	174	28	22	10	38	1.87
47035--47095	29	2.1	29	81	6	70	68	1	6	22	1.21
49330--49365	2	18.5	2	94	5	65	0	52	0	47	1.00
49613--49856	88	2.8	88	89	3	364	40	4	11	42	1.63
51179--51208	15	1.9	16	93	6	53	46	3	13	36	1.60
53771--53892	32	3.8	32	85	1	129	20	22	29	27	1.99
55500--55575	24	3.3	24	83	5	95	17	25	23	34	1.96
55531--55616	20	4.1	20	84	6	100	17	22	20	39	1.92
55609--55660	24	2.2	23	93	3	86	17	26	23	32	1.96

Tables:   1

The End!