genome.fa.s5617.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005617.1 Hibiscus syriacus cultivar Beakdansim tig00013064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88853

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--69	1	66.0	1	78	0	69	0	10	0	89	0.49
1--72	8	9.6	8	82	14	100	0	12	0	87	0.54
12--72	31	2.0	31	96	3	97	0	11	0	88	0.51
7287--7318	15	2.1	15	94	0	55	46	9	18	25	1.79
10606--10678	28	2.6	29	78	6	78	61	0	6	31	1.22
12625--12699	3	24.7	3	86	2	87	58	0	0	41	0.98
12617--12697	15	5.5	15	83	11	105	56	0	0	43	0.99
16892--17047	65	2.4	64	82	9	176	30	18	22	28	1.97
17347--17484	72	1.9	72	96	0	258	31	12	18	38	1.87
23283--23501	110	2.0	111	82	1	269	29	20	16	33	1.95
23283--23532	110	2.3	110	81	5	263	29	20	16	34	1.94
23529--23652	28	4.5	28	78	14	141	24	16	18	40	1.91
23592--23678	27	3.2	27	72	18	90	26	13	19	40	1.89
23564--23678	54	2.1	55	91	1	187	25	15	19	40	1.91
25148--25196	24	2.0	24	96	0	89	61	8	14	16	1.56
33288--33312	13	1.9	13	100	0	50	56	28	0	16	1.41
35054--35099	20	2.3	19	85	14	58	26	15	8	50	1.73
44992--45037	20	2.3	19	85	14	58	26	15	8	50	1.73
45147--45172	13	2.0	13	100	0	52	23	7	30	38	1.83
48491--48557	20	3.3	20	91	0	98	31	29	16	22	1.96
55865--55984	41	2.9	41	63	14	93	30	17	19	33	1.95
55847--56161	83	3.8	83	78	4	303	31	17	18	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60197--60264	30	2.3	30	92	0	109	25	16	38	20	1.92
64730--64908	42	4.2	41	76	9	155	24	24	18	32	1.97
64730--64874	42	3.4	41	83	6	166	24	24	18	33	1.97
65470--65505	16	2.2	17	90	5	56	50	2	0	47	1.15
71364--71613	87	2.9	87	95	0	446	42	9	14	33	1.78
75131--75369	120	2.0	120	95	0	433	38	15	13	31	1.87
74962--75556	303	2.0	303	96	0	1109	34	16	14	34	1.89
75247--75652	183	2.2	182	93	2	688	34	16	14	34	1.89
76257--76909	200	3.3	200	96	0	1191	30	19	14	36	1.91
77131--77191	19	3.3	18	88	2	59	52	11	1	34	1.47
77143--77191	19	2.6	19	96	0	89	55	10	2	32	1.45
78738--78791	18	3.2	17	70	21	51	3	42	0	53	1.18
78738--78788	15	3.3	15	75	17	50	3	43	0	52	1.19
79073--79113	21	2.0	21	90	0	64	19	26	12	41	1.87
81327--81372	19	2.4	19	79	13	58	19	17	10	52	1.74
81507--81553	20	2.4	19	79	10	58	19	14	10	55	1.68
81294--81765	181	2.6	182	89	1	698	27	17	13	41	1.86
81294--81780	182	2.7	181	86	3	660	27	17	13	41	1.87
82272--82307	13	2.5	15	82	17	58	47	0	5	47	1.25
82399--82450	16	3.1	17	74	20	56	46	0	0	53	1.00
82409--82435	14	1.9	14	100	0	54	44	0	0	55	0.99
84751--85022	75	3.6	75	81	8	297	34	19	8	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85870--85918	22	2.2	22	82	10	55	55	6	4	34	1.44
86771--86826	23	2.5	23	97	2	105	30	10	33	25	1.90

Tables:   1

The End!