genome.fa.s5618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005618.1 Hibiscus syriacus cultivar Beakdansim tig00013066_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60046

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
969--1010	19	2.2	19	87	8	59	59	9	0	30	1.29
2499--2554	26	2.2	26	93	3	96	51	12	10	25	1.71
3241--3294	16	3.4	16	78	0	63	48	22	12	16	1.80
3194--3294	32	3.2	32	72	2	87	47	21	11	18	1.81
4304--4356	26	2.1	25	85	3	70	20	22	5	50	1.69
15356--15407	20	2.6	20	87	0	68	17	19	25	38	1.93
17011--17110	42	2.4	42	73	6	103	26	18	32	24	1.97
17254--17295	4	10.5	4	84	0	57	69	4	0	26	1.08
19800--19848	20	2.5	20	93	0	89	18	18	22	40	1.91
19853--19940	20	4.3	20	72	2	86	23	17	23	35	1.95
25362--25416	3	19.3	3	74	10	53	40	1	0	58	1.09
25350--25410	14	4.2	14	81	12	70	39	1	1	57	1.18
25387--25429	20	2.2	20	83	8	52	41	2	0	55	1.12
27050--27107	30	1.9	31	82	10	75	18	13	8	58	1.61
30316--30354	20	2.0	20	89	0	60	30	15	15	38	1.88
30982--31062	26	3.0	25	75	15	74	72	8	16	2	1.19
30947--31060	14	8.1	14	71	19	69	73	7	15	2	1.17
32472--32574	36	2.9	35	76	15	104	33	16	10	38	1.83
32485--32764	133	2.1	133	80	10	302	33	17	10	38	1.84
32943--33004	28	2.2	26	81	15	79	27	11	16	45	1.81
32950--33008	29	2.0	29	87	6	84	28	10	15	45	1.78
32977--33124	59	2.5	60	89	7	214	29	12	14	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33096--33161	27	2.4	27	85	5	80	31	13	12	42	1.81
33168--33227	27	2.2	27	81	3	66	30	13	15	41	1.85
33037--33241	91	2.3	87	83	6	243	28	14	13	43	1.83
33176--33268	27	3.3	27	76	13	80	26	15	10	47	1.78
33271--33418	66	2.2	66	91	2	235	33	14	12	39	1.84
33485--33634	32	4.4	32	72	18	101	33	14	12	39	1.84
33771--33850	28	2.9	29	79	7	94	23	17	15	43	1.86
33879--34217	134	2.5	134	84	1	401	25	28	18	27	1.98
34417--34471	3	19.3	3	78	10	62	38	1	0	60	1.08
34417--34471	11	5.4	11	73	22	57	38	1	0	60	1.08
34417--34465	14	3.5	14	83	10	73	36	2	0	61	1.08
34417--34471	20	2.8	20	83	10	69	38	1	0	60	1.08
36444--36478	2	17.5	2	87	0	52	45	0	5	48	1.26
41785--42469	215	3.2	213	89	3	1025	50	8	11	29	1.68
42472--42588	2	58.0	2	80	11	132	47	1	3	47	1.29
42627--42717	39	2.2	41	86	7	123	47	6	4	41	1.49
42682--42719	11	3.5	11	88	0	58	50	2	2	44	1.30
42467--42729	20	12.9	20	71	13	110	47	5	4	43	1.45
42872--42916	13	3.6	12	80	11	54	37	6	0	55	1.26
42872--42944	25	2.8	26	79	10	78	38	5	1	54	1.32
42856--42968	58	1.9	58	81	10	133	39	7	2	50	1.44
42902--42993	33	2.9	33	84	9	113	42	6	4	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43014--43146	18	7.4	18	67	22	75	41	9	7	42	1.65
43011--43090	42	1.9	42	94	0	142	42	8	7	41	1.64
43120--43247	2	59.0	2	67	20	53	42	7	4	46	1.52
43067--43141	33	2.3	34	88	6	118	41	10	6	41	1.66
43175--43247	20	3.6	20	81	9	78	45	5	2	46	1.40
43087--43252	53	3.0	55	85	6	221	42	7	4	45	1.54
43201--43269	34	2.0	36	85	5	97	46	7	2	43	1.46
43291--43554	33	7.5	33	70	15	147	43	6	6	43	1.55
43317--43565	18	14.0	18	69	17	155	44	6	6	42	1.56
43291--43568	51	5.3	51	78	13	303	43	6	6	43	1.55
43372--43429	17	3.5	17	69	21	59	41	5	6	46	1.53
43336--43495	84	1.9	86	86	2	234	42	6	6	43	1.58
43618--43765	62	2.4	62	86	5	187	47	5	8	37	1.57
43639--43765	62	2.1	62	89	4	195	49	5	7	37	1.55
46502--46593	27	3.3	27	70	19	80	57	2	3	36	1.27
46521--46564	21	2.2	20	87	4	61	56	0	6	36	1.26
46760--46798	16	2.4	16	86	0	51	33	17	25	23	1.96
47789--47851	31	2.0	31	96	0	117	44	22	11	22	1.84
48456--48494	19	2.0	21	90	10	64	23	5	7	64	1.40
50195--50324	64	2.0	65	92	1	217	40	1	19	38	1.61
54733--54782	20	2.5	20	86	0	73	38	26	14	22	1.91
54773--54824	20	2.6	19	79	8	59	32	26	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54773--55017	40	6.1	39	73	12	129	28	22	13	34	1.93
54832--54926	20	4.7	20	73	12	68	26	23	12	37	1.90
54875--55004	60	2.2	60	85	0	170	25	22	15	36	1.93
54875--55017	20	7.2	20	70	9	94	26	21	14	37	1.92
58391--58446	24	2.2	24	81	12	69	48	1	1	48	1.22
58475--58542	28	2.6	26	78	17	77	51	1	0	47	1.09

Tables:   1

The End!