genome.fa.s5619.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005619.1 Hibiscus syriacus cultivar Beakdansim tig00013067_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189028

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881--941	27	2.3	27	83	13	83	24	26	11	37	1.89
3091--3148	13	4.7	12	75	14	55	68	1	10	18	1.26
3091--3148	12	4.6	13	75	14	50	68	1	10	18	1.26
9015--9060	23	2.0	24	86	4	67	43	4	28	23	1.73
12969--13190	43	5.2	43	80	3	180	32	17	21	29	1.96
15394--15418	12	2.1	12	100	0	50	76	0	8	16	1.02
15465--15735	2	136.0	2	67	18	129	46	4	2	46	1.36
15468--15667	70	2.9	69	80	10	191	48	5	2	45	1.36
15712--15829	18	6.6	18	69	16	75	50	5	3	40	1.44
15922--15951	9	3.3	9	95	0	51	53	13	0	33	1.40
15912--15967	18	3.1	18	75	10	60	46	10	3	39	1.56
16059--16173	29	3.8	28	70	12	77	43	7	5	43	1.55
16168--16227	27	2.2	28	84	3	77	38	3	5	53	1.39
17485--17520	18	2.0	18	88	0	54	44	16	0	38	1.48
18026--18088	18	3.3	18	77	12	72	49	4	0	46	1.23
19441--19485	9	5.0	9	86	7	65	11	31	37	20	1.87
19441--19486	18	2.6	18	96	0	83	10	30	39	19	1.86
22363--22413	25	2.0	25	100	0	102	27	3	27	41	1.73
22764--22789	5	5.2	5	100	0	52	23	57	19	0	1.40
24485--24588	53	2.0	53	96	0	190	39	14	20	25	1.90
32178--32223	20	2.3	20	96	0	83	21	23	21	32	1.98
35688--35727	21	1.9	21	94	0	71	35	25	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43876--43915	21	1.9	21	100	0	80	32	15	22	30	1.94
48428--48478	15	3.4	14	77	15	57	5	13	3	76	1.11
48429--48478	16	3.2	16	82	2	66	6	12	4	78	1.08
48994--49061	36	2.0	35	86	11	97	41	27	13	17	1.87
50370--50412	21	2.0	21	81	9	50	37	23	20	18	1.94
58295--58343	22	2.2	22	100	0	98	28	4	24	42	1.73
58602--58630	2	14.5	2	100	0	58	48	0	0	51	1.00
59387--59424	20	1.9	20	88	0	58	21	26	10	42	1.85
59450--59497	24	2.0	24	87	0	69	27	12	22	37	1.90
74338--74567	102	2.2	102	86	3	302	36	10	19	34	1.86
74499--74568	36	1.9	36	82	5	88	37	12	18	31	1.89
79910--79954	15	3.0	15	93	0	72	55	6	4	33	1.46
82202--82250	3	15.3	3	87	8	62	71	0	0	28	0.86
82194--82244	14	3.5	14	82	15	59	70	0	0	29	0.87
82194--82251	6	8.8	6	82	14	53	72	0	0	27	0.85
85167--85207	21	1.9	22	90	5	66	53	0	9	36	1.34
90564--90607	21	2.1	21	82	0	52	9	43	15	31	1.79
91802--91850	19	2.6	19	84	9	57	24	28	20	26	1.99
93647--93689	15	2.9	14	83	16	52	46	13	16	23	1.83
94434--94502	29	2.4	30	80	7	88	42	18	7	31	1.78
100477--100517	14	2.8	15	85	10	50	26	17	9	46	1.79
106793--106861	29	2.4	30	87	7	106	36	5	15	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108642--108709	29	2.3	29	92	0	109	45	16	2	35	1.62
111919--112026	54	2.0	54	96	0	198	33	24	15	26	1.95
114055--114195	63	2.2	63	89	0	219	33	17	19	29	1.95
114479--114619	63	2.2	63	91	0	228	33	16	20	29	1.94
113957--114808	424	2.0	424	98	0	1650	33	14	20	31	1.93
116067--116289	45	5.0	45	90	0	338	30	23	9	36	1.87
116021--116289	90	3.0	89	86	3	344	28	23	9	37	1.86
117382--117412	3	10.3	3	100	0	62	67	0	32	0	0.91
117738--117812	32	2.3	32	83	0	87	34	12	20	33	1.89
118137--118188	22	2.4	22	96	0	95	25	7	15	51	1.69
118707--118782	20	3.7	20	75	18	75	51	2	3	42	1.34
118720--118779	19	3.1	19	80	7	57	50	3	1	45	1.28
119467--119503	3	12.3	3	100	0	74	67	0	0	32	0.91
120936--120993	18	3.3	18	77	15	59	15	13	0	70	1.17
120936--120980	18	2.5	19	86	10	60	15	8	0	75	1.03
131190--131295	54	1.9	55	80	1	124	37	16	15	30	1.90
135471--135583	32	3.5	32	85	0	145	32	13	23	30	1.93
138985--139588	68	8.9	68	87	1	870	30	13	25	29	1.94
139600--139629	10	3.0	10	95	0	51	56	0	10	33	1.32
139608--139971	45	8.1	45	90	2	536	45	6	21	26	1.75
139900--140021	45	2.7	45	85	2	138	40	11	20	27	1.86
146535--146568	16	2.2	15	89	5	50	47	0	2	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154211--154255	21	2.1	21	95	0	81	42	24	8	24	1.83
154637--154741	37	2.8	37	85	0	138	40	14	15	29	1.86
155896--155929	17	1.9	18	88	5	52	8	26	0	64	1.22
159154--159200	14	3.4	14	82	17	62	80	4	14	0	0.85
159146--159210	16	4.0	16	75	16	62	80	4	12	3	0.99
159148--159213	25	2.4	28	80	9	75	80	3	13	3	0.95
159818--159894	22	3.5	22	94	0	136	37	27	14	20	1.91
160720--162198	106	14.0	106	89	2	2129	34	24	17	23	1.96
162930--163034	37	2.8	37	86	0	147	40	14	15	30	1.87
165415--165454	20	2.0	20	95	0	71	37	30	2	30	1.71
184632--184674	22	2.0	22	86	9	61	39	34	2	23	1.67
185882--186032	30	5.2	29	73	7	119	40	19	23	15	1.91
185953--186032	29	2.7	30	84	1	108	40	20	23	16	1.91

Tables:   1

The End!