Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000562.1 Hibiscus syriacus cultivar Beakdansim tig00001099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63276
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:2161 original size:31 final size:31
Alignment explanation
Indices: 2063--2153 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
2053 CAATTTAAGG
2063 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTTTTTGGACTTGAATTGAATTTA
2094 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTTTTTGGACTTGAATTGAATTTA
2125 CAAAAT-GTTTTTGGACTT-AATTGAATTTA
1 CAAAATGGTTTTTGGACTTGAATTGAATTTA
2154 TTCAAAATTT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.18
30 12 0.20
31 37 0.62
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.43
Consensus pattern (31 bp):
CAAAATGGTTTTTGGACTTGAATTGAATTTA
Found at i:2240 original size:21 final size:21
Alignment explanation
Indices: 2216--2257 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
2206 AAAATGTTTT
*
2216 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
2237 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
2258 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:2324 original size:20 final size:22
Alignment explanation
Indices: 2286--2325 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
2276 TTTGAGTATA
2286 AAAATCATCCCCAAACGGCTCT
1 AAAATCATCCCCAAACGGCTCT
2308 AAAAT-ATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
2326 ATATACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.38, C:0.35, G:0.10, T:0.17
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCT
Found at i:2579 original size:34 final size:32
Alignment explanation
Indices: 2540--2609 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
2530 TTTTGTAAAG
*
2540 GGGAAAGGTTCTAGCTTAGCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
2574 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
2606 GGGA
1 GGGA
2610 GTTGTAAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 11 0.32
33 1 0.03
34 22 0.65
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.21
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:5590 original size:94 final size:95
Alignment explanation
Indices: 5435--5634 Score: 287
Period size: 94 Copynumber: 2.1 Consensus size: 95
5425 TAATGCAATT
*
5435 AGTATCGATACTAAAAGAAAAGTATCGATACCATGGATTCCAGAATACCAAAATGATATCGATA-
1 AGTATCGATACTAAAAGAAAAGTATCGATACCATGGATTCCAGAATACAAAAATGATATCGATAC
* *
5499 CTGAAAGGGAGTATCGGTACCATAGTATAGA
66 CT-AAAGGGAGTATCGATACCACAGTATAGA
* * * * * *
5530 AGTATCGGTACTAAGAGAAGAGTATCGATACCGTGGA-TCCAGAATATAAAAATGGTATCGATAC
1 AGTATCGATACTAAAAGAAAAGTATCGATACCATGGATTCCAGAATACAAAAATGATATCGATAC
5594 CTAAAGGGAGTATCGATACCACAGTATAGA
66 CTAAAGGGAGTATCGATACCACAGTATAGA
*
5624 AGTATTGATAC
1 AGTATCGATAC
5635 CATGGTGGGG
Statistics
Matches: 93, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
94 58 0.62
95 35 0.38
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.23
Consensus pattern (95 bp):
AGTATCGATACTAAAAGAAAAGTATCGATACCATGGATTCCAGAATACAAAAATGATATCGATAC
CTAAAGGGAGTATCGATACCACAGTATAGA
Found at i:6034 original size:55 final size:55
Alignment explanation
Indices: 5969--6297 Score: 525
Period size: 55 Copynumber: 6.0 Consensus size: 55
5959 ATTAACAAAT
*
5969 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTGTATGAATTTCCGTATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
6024 GGCACTTTGTGTGCAAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
1 GGCACTTTGTGTGC-AAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
6080 GGCACTTCGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * **
6135 GGCACTTTATGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTAAA
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
**
6190 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAA-TTCTATATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * * *
6244 GGTAATTTGTGTGCAAAACTAAGAAATTTATAATAAGTTTATGAATTTCTGTAT
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTAT
6298 TGGTAGTGGG
Statistics
Matches: 253, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
54 46 0.18
55 155 0.61
56 52 0.21
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.35
Consensus pattern (55 bp):
GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
Found at i:7063 original size:23 final size:23
Alignment explanation
Indices: 7036--7087 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
7026 GAGTCGAGGG
7036 TTCTACGCGGTCATTCGAGACAA
1 TTCTACGCGGTCATTCGAGACAA
* *
7059 TTCTACGTGGTCCTTCGAGACAA
1 TTCTACGCGGTCATTCGAGACAA
7082 TTCTAC
1 TTCTAC
7088 ATGGCATTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (23 bp):
TTCTACGCGGTCATTCGAGACAA
Found at i:8645 original size:103 final size:103
Alignment explanation
Indices: 8538--8766 Score: 228
Period size: 103 Copynumber: 2.2 Consensus size: 103
8528 TAAAAAATAT
* * * * *
8538 AATTTAAACTAAATTTACCAAACTAC-TCAAATACAACTTAATATGTAAAATCAATAAATAGTCT
1 AATTTAAACTAAACTTACCAAACCACGT-AAATACAACTTAATATGTAAAAT-AAAAAAAAATCT
** *
8602 AA-TAATTATTATTTAAAATAAAAATAAAAATTACACAAA
64 AATTAATTAAAATTTAAAATAAAAACAAAAATTACACAAA
* * * * ** *
8641 AATTTAAATTAAACTTACTATACCACGTAAATATAGTTTAATCTGTAAAATAAAAAAAAATCTAA
1 AATTTAAACTAAACTTACCAAACCACGTAAATACAACTTAATATGTAAAATAAAAAAAAATCTAA
* *
8706 TTAATTAAAATTTAAAATAAAAACAAAAAATGAAACAATAA
66 TTAATTAAAATTTAAAATAAAAAC-AAAAATTACAC-A-AA
* *
8747 AATTTACATTAAACTTACCA
1 AATTTAAACTAAACTTACCA
8767 GGAAATTCAA
Statistics
Matches: 102, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
102 11 0.11
103 60 0.59
104 10 0.10
105 1 0.01
106 20 0.20
ACGTcount: A:0.56, C:0.11, G:0.03, T:0.31
Consensus pattern (103 bp):
AATTTAAACTAAACTTACCAAACCACGTAAATACAACTTAATATGTAAAATAAAAAAAAATCTAA
TTAATTAAAATTTAAAATAAAAACAAAAATTACACAAA
Found at i:8964 original size:25 final size:25
Alignment explanation
Indices: 8936--8987 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
8926 CCTTACATGA
*
8936 ATTATTGGTGCACAATAATGGCACC
1 ATTATTAGTGCACAATAATGGCACC
*
8961 ATTATTAGTGCCCAATAATGGCACC
1 ATTATTAGTGCACAATAATGGCACC
8986 AT
1 AT
8988 GATTCGGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (25 bp):
ATTATTAGTGCACAATAATGGCACC
Found at i:9278 original size:17 final size:16
Alignment explanation
Indices: 9237--9278 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
9227 ATATATGGGG
9237 AAATAATC-TGAGAAA
1 AAATAATCTTGAGAAA
*
9252 AACATCATCTTGAGAATA
1 AA-ATAATCTTGAGAA-A
9270 AAATAATCT
1 AAATAATCT
9279 CAAGTGCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 2 0.09
16 5 0.23
17 12 0.55
18 3 0.14
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (16 bp):
AAATAATCTTGAGAAA
Found at i:9515 original size:22 final size:20
Alignment explanation
Indices: 9477--9516 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
9467 TCTATCTTTC
*
9477 ATTAAATAATTCAATTTCAA
1 ATTAAATAAATCAATTTCAA
9497 ATTAAATATAATCACATTTC
1 ATTAAATA-AATCA-ATTTC
9517 TCTTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 4 0.24
22 5 0.29
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTAAATAAATCAATTTCAA
Found at i:16077 original size:41 final size:41
Alignment explanation
Indices: 16020--16103 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
16010 CATTGTTCTT
16020 CATCTGCTTCATATGACTAACCATAATAACATCCTTATTTC
1 CATCTGCTTCATATGACTAACCATAATAACATCCTTATTTC
*
16061 CATCTGCTTCATATGACTCACCATAATAACATCCTTATTTC
1 CATCTGCTTCATATGACTAACCATAATAACATCCTTATTTC
16102 CA
1 CA
16104 GTGGTGGTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.36
Consensus pattern (41 bp):
CATCTGCTTCATATGACTAACCATAATAACATCCTTATTTC
Found at i:18208 original size:37 final size:38
Alignment explanation
Indices: 18167--18242 Score: 95
Period size: 37 Copynumber: 2.0 Consensus size: 38
18157 TTTGAGATCA
18167 ATTTAATA-TTTAAAATTCATGAT-GAAATTAAT-ATTTT
1 ATTTAA-AGTTTAAAATTCAT-ATAGAAATTAATCATTTT
*
18204 ATTTAAAGTTTAAGATTCATATCAGAAATTAATCATTTT
1 ATTTAAAGTTTAAAATTCATAT-AGAAATTAATCATTTT
18243 TAATGTGTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
36 3 0.09
37 17 0.50
38 9 0.26
39 5 0.15
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.46
Consensus pattern (38 bp):
ATTTAAAGTTTAAAATTCATATAGAAATTAATCATTTT
Found at i:18740 original size:40 final size:40
Alignment explanation
Indices: 18691--18773 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
18681 AATAAAAAAA
18691 ATAAGATATTTAATTATTTATTATGAGTGAATAATTAAAT
1 ATAAGATATTTAATTATTTATTATGAGTGAATAATTAAAT
18731 ATAAGATATTTAATTATTTATTATGAGTGAATAATTAAAT
1 ATAAGATATTTAATTATTTATTATGAGTGAATAATTAAAT
18771 ATA
1 ATA
18774 TATATATATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.45
Consensus pattern (40 bp):
ATAAGATATTTAATTATTTATTATGAGTGAATAATTAAAT
Found at i:18776 original size:2 final size:2
Alignment explanation
Indices: 18769--18795 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18759 GAATAATTAA
18769 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
18796 ATAGGAGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:30915 original size:65 final size:65
Alignment explanation
Indices: 30755--30915 Score: 204
Period size: 64 Copynumber: 2.5 Consensus size: 65
30745 TTGTTTAAGG
* * * **
30755 TGCATCGATGCACATGCAGTGCATCGATGCAT--GAATTTAAATAGAAAACATCGAATAGGATTT
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCA-TTAAATAGAAAACATCGAATAGGATTT
30818 A
65 A
*
30819 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATA-CAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
*
30883 TGCATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 TGCATCGATGCATAAG-G-AGTGCATCGATGCAT
30916 ACCTTCATTA
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
63 1 0.01
64 62 0.72
65 22 0.26
66 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27
Consensus pattern (65 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
Found at i:31429 original size:18 final size:18
Alignment explanation
Indices: 31406--31440 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
31396 CTAGGAGATT
31406 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
31424 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
31441 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:45104 original size:20 final size:19
Alignment explanation
Indices: 45067--45107 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
45057 ATTTTTTATT
45067 TAAAAATTATATAAAATAA
1 TAAAAATTATATAAAATAA
* *
45086 TAAAAATATATTTATAATAA
1 TAAAAAT-TATATAAAATAA
45106 TA
1 TA
45108 TTAATCAGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAAAATTATATAAAATAA
Found at i:46250 original size:20 final size:21
Alignment explanation
Indices: 46225--46264 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
46215 AAATAAATAG
46225 TAAAATATTAAATTA-GGTTC
1 TAAAATATTAAATTATGGTTC
*
46245 TAAAATATTACATTATGGTT
1 TAAAATATTAAATTATGGTT
46265 TTATGTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.42
Consensus pattern (21 bp):
TAAAATATTAAATTATGGTTC
Found at i:53006 original size:23 final size:23
Alignment explanation
Indices: 52945--53019 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 23
52935 GAGTCGAGGG
* *
52945 TTCTACGCGATCTTTCGGGACAA
1 TTCTACGCGATCCTTCAGGACAA
* * * * *
52968 TTCTATGTGGTTCTTCCGGACAA
1 TTCTACGCGATCCTTCAGGACAA
52991 TTCTACGCGATCCTTCAGGACAA
1 TTCTACGCGATCCTTCAGGACAA
*
53014 ATCTAC
1 TTCTAC
53020 ATGGCACTTC
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (23 bp):
TTCTACGCGATCCTTCAGGACAA
Found at i:54060 original size:23 final size:23
Alignment explanation
Indices: 54034--54094 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
54024 CTCGTATAAA
*
54034 TGCACCAAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
54057 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
54080 TGTACCGAAGTGCCA
1 TGCACCGAAGTGCCA
54095 TATAAAATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.18
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:55556 original size:20 final size:19
Alignment explanation
Indices: 55531--55582 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
55521 CCCCTTGAAG
55531 TGCATCGATACATTCTA-CAA
1 TGCATCGATACA--CTACCAA
* *
55551 TGCATCGATGCACTACCCA
1 TGCATCGATACACTACCAA
55570 TGCATCGATACAC
1 TGCATCGATACAC
55583 AAATCACCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 3 0.11
19 14 0.50
20 11 0.39
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.25
Consensus pattern (19 bp):
TGCATCGATACACTACCAA
Found at i:59052 original size:23 final size:23
Alignment explanation
Indices: 59022--59082 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
59012 CTCGTTTAAA
59022 TGCACCGAAGTGCCACATAGAAT
1 TGCACCGAAGTGCCACATAGAAT
***
59045 TGCACCGAAGTGCCGTGTAGAAT
1 TGCACCGAAGTGCCACATAGAAT
*
59068 TACACCGAAGTGCCA
1 TGCACCGAAGTGCCA
59083 TATAAAATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.18
Consensus pattern (23 bp):
TGCACCGAAGTGCCACATAGAAT
Found at i:60528 original size:24 final size:20
Alignment explanation
Indices: 60475--60532 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
60465 TTCCCCTTGA
*
60475 AGTGCATCGATACATTCTAC
1 AGTGCATCGATGCATTCTAC
60495 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
60518 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
60533 CTACCCATGC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:61901 original size:23 final size:22
Alignment explanation
Indices: 61864--61938 Score: 98
Period size: 23 Copynumber: 3.4 Consensus size: 22
61854 CACTGAAGTG
61864 CCACATA-TTTGTCCCGAAGGA
1 CCACATAGTTTGTCCCGAAGGA
*
61885 CCACATAGGTTTGTCCCGAAAGA
1 CCACATA-GTTTGTCCCGAAGGA
* *
61908 CCACATAATTTTGTCCCAAAGGA
1 CCACAT-AGTTTGTCCCGAAGGA
61931 CCACATAG
1 CCACATAG
61939 AACTCTCGAC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.15
22 1 0.02
23 37 0.80
24 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (22 bp):
CCACATAGTTTGTCCCGAAGGA
Done.