Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005620.1 Hibiscus syriacus cultivar Beakdansim tig00013072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77040
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:266 original size:28 final size:28
Alignment explanation
Indices: 234--295 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
224 AATAAATGGT
* *
234 AGTCATGTGCATATGAGTGAATGAAAGC
1 AGTCATGAGCATATGAGTGAATAAAAGC
262 AGTCATGAGCATATGAGTGAATAAAAGC
1 AGTCATGAGCATATGAGTGAATAAAAGC
290 AGTCAT
1 AGTCAT
296 AAGATGACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (28 bp):
AGTCATGAGCATATGAGTGAATAAAAGC
Found at i:2928 original size:15 final size:16
Alignment explanation
Indices: 2887--2920 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
2877 TCCCCTTAAA
*
2887 TAAAATAATTTTTGGC
1 TAAAACAATTTTTGGC
2903 TAAAACAATTTTTGGC
1 TAAAACAATTTTTGGC
2919 TA
1 TA
2921 GAAAATTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (16 bp):
TAAAACAATTTTTGGC
Found at i:6633 original size:15 final size:15
Alignment explanation
Indices: 6605--6645 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
6595 CATCATTTTT
6605 CTTCTTCTCATTCTTTC
1 CTTCTTCT--TTCTTTC
*
6622 CTTCTTCTTTCTTTT
1 CTTCTTCTTTCTTTC
6637 CTTCTTCTT
1 CTTCTTCTT
6646 GCTCCTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.65
17 8 0.35
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (15 bp):
CTTCTTCTTTCTTTC
Found at i:12191 original size:23 final size:23
Alignment explanation
Indices: 12148--12191 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
12138 AATTCAGAAT
* *
12148 AATAATATAATTATCTATTTAAA
1 AATAATATAATAATATATTTAAA
12171 AATAATTATAATAATAT-TTTA
1 AATAA-TATAATAATATATTTA
12192 TTTTTATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 9 0.50
24 9 0.50
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
AATAATATAATAATATATTTAAA
Found at i:12200 original size:13 final size:13
Alignment explanation
Indices: 12184--12221 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
12174 AATTATAATA
12184 ATATTTTATTTTT
1 ATATTTTATTTTT
12197 ATATTTTATATTTT
1 ATATTTTAT-TTTT
*
12211 -TATTTGATTTT
1 ATATTTTATTTT
12222 ATTAAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 3 0.13
13 16 0.70
14 4 0.17
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (13 bp):
ATATTTTATTTTT
Found at i:12205 original size:7 final size:7
Alignment explanation
Indices: 12184--12215 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
12174 AATTATAATA
12184 ATATTTT
1 ATATTTT
12191 AT-TTTT
1 ATATTTT
12197 ATATTTT
1 ATATTTT
12204 ATATTTT
1 ATATTTT
12211 -TATTT
1 ATATTT
12216 GATTTTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 11 0.46
7 13 0.54
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (7 bp):
ATATTTT
Found at i:16240 original size:30 final size:31
Alignment explanation
Indices: 16206--16270 Score: 107
Period size: 29 Copynumber: 2.2 Consensus size: 31
16196 TGTAGTTCAG
16206 CCTTTTAACTTTCTGTTTT-GATATTTTAGT
1 CCTTTTAACTTTCTGTTTTGGATATTTTAGT
*
16236 CC-TTTAACTTTCTGTTTTGGCTATTTTAGT
1 CCTTTTAACTTTCTGTTTTGGATATTTTAGT
16266 CCTTT
1 CCTTT
16271 AAGTTTATTG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 16 0.50
30 14 0.44
31 2 0.06
ACGTcount: A:0.14, C:0.17, G:0.11, T:0.58
Consensus pattern (31 bp):
CCTTTTAACTTTCTGTTTTGGATATTTTAGT
Found at i:16271 original size:30 final size:29
Alignment explanation
Indices: 16209--16314 Score: 122
Period size: 33 Copynumber: 3.5 Consensus size: 29
16199 AGTTCAGCCT
*
16209 TTTAACTTTCTGTTTTGATATTTTAGTCC
1 TTTAACTTTCTGTTTTGCTATTTTAGTCC
16238 TTTAACTTTCTGTTTTGGCTATTTTAGTCC
1 TTTAACTTTCTGTTTT-GCTATTTTAGTCC
* * *
16268 TTTAAGTTTATTGTTTTTTTGCTATTTTATTCC
1 TTTAACTTT-CTG---TTTTGCTATTTTAGTCC
*
16301 TTTAAGTTTCTGTT
1 TTTAACTTTCTGTT
16315 AATGTCATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
29 18 0.27
30 20 0.30
31 2 0.03
32 2 0.03
33 21 0.31
34 4 0.06
ACGTcount: A:0.15, C:0.12, G:0.11, T:0.61
Consensus pattern (29 bp):
TTTAACTTTCTGTTTTGCTATTTTAGTCC
Found at i:16302 original size:33 final size:30
Alignment explanation
Indices: 16209--16314 Score: 124
Period size: 30 Copynumber: 3.5 Consensus size: 30
16199 AGTTCAGCCT
* *
16209 TTTAACTTTCTG-TTTTGATATTTTAGTCC
1 TTTAAGTTTCTGTTTTTGCTATTTTAGTCC
* *
16238 TTTAACTTTCTGTTTTGGCTATTTTAGTCC
1 TTTAAGTTTCTGTTTTTGCTATTTTAGTCC
* *
16268 TTTAAGTTTATTGTTTTTTTGCTATTTTATTCC
1 TTTAAGTTT-CTG--TTTTTGCTATTTTAGTCC
16301 TTTAAGTTTCTGTT
1 TTTAAGTTTCTGTT
16315 AATGTCATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
29 12 0.18
30 25 0.38
31 2 0.03
32 2 0.03
33 25 0.38
ACGTcount: A:0.15, C:0.12, G:0.11, T:0.61
Consensus pattern (30 bp):
TTTAAGTTTCTGTTTTTGCTATTTTAGTCC
Found at i:17552 original size:13 final size:13
Alignment explanation
Indices: 17534--17559 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17524 AAGGATCAGA
17534 ATTCAATGTTCTT
1 ATTCAATGTTCTT
17547 ATTCAATGTTCTT
1 ATTCAATGTTCTT
17560 CTACTCCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (13 bp):
ATTCAATGTTCTT
Found at i:19814 original size:449 final size:449
Alignment explanation
Indices: 18976--19818 Score: 1481
Period size: 449 Copynumber: 1.9 Consensus size: 449
18966 TAAATGAAAG
* * * *
18976 TGTTAGGATCGAGTCATTCATTTCTAAATAACTTCTCAATGGGTCACCCATCCTTGGATTTCCCT
1 TGTTAGGATCAAATCATTCATTTCTAAACAACTTCCCAATGGGTCACCCATCCTTGGATTTCCCT
* *
19041 AGTCCAAGCACGCTTAACCACAGAGTTCTGAAGTGAATGATCACCATTCCTTCTTAAAACCAATT
66 AGTCCAAGCACGCTTAACCACAGAGTTCTGAAGCGAATGATCACAATTCCTTCTTAAAACCAATT
* * *
19106 GTTGATAAGTAGGTGGGCCATTTTAACCTCATATCTTTATAGTGGGTGATCACTGGGTTCCTCCA
131 GGTGATAAGTAGGTGGGCCATTTTAACCTCATATATTTATAGTGGGTGATCACTGGGTTCCCCCA
19171 AGCCAAGGTGGATTCTTGTGGGGCACCCCCACAGTTCACCACGGCATTGCAGAGCCCCGCATCTA
196 AGCCAAGGTGGATTCTTGTGGGGCACCCCCACAGTTCACCACGGCATTGCAGAGCCCCGCATCTA
*
19236 TAGCGTGCTGCAGGCGGGCCTAGGGGCTTCGCAAGGCACACGTGGGCCTCGGCAGGTTAGGCAGT
261 TAGCGTGCTGCAGGCGGGCCTAGGGGCTTCGCAAGGCACACGTGGGCCTCGACAGGTTAGGCAGT
* *
19301 CACGCACCGATATCGCGTCCATACACTATAGAATCCCTAAGGGTGATCGCTAGACCCCATAACCC
326 CACGCACCGATATCGCGCCCATACACGATAGAATCCCTAAGGGTGATCGCTAGACCCCATAACCC
19366 AACAATCACCCCCAGCGACACCTGGGGGATTCGAACCTGCAACCTACTTTGATACCAGT
391 AACAATCACCCCCAGCGACACCTGGGGGATTCGAACCTGCAACCTACTTTGATACCAGT
* * *
19425 TGTTAGGATCAAATCATTCATTTCTGAACAACTTCCCAGTGGGTCACCCATCCTTGGATTTTCCT
1 TGTTAGGATCAAATCATTCATTTCTAAACAACTTCCCAATGGGTCACCCATCCTTGGATTTCCCT
19490 AGTCCAAGCACGCTTAACCACAGAGTTCTGAAGCGAATGATCACAATT-CTTCTTAAAACCAATT
66 AGTCCAAGCACGCTTAACCACAGAGTTCTGAAGCGAATGATCACAATTCCTTCTTAAAACCAATT
** *
19554 GGTGATAAGTAGGTGGGCCATTTTAGTCTCATATATTTGTAGTGGGTGATCACTGGGTTCCCCCA
131 GGTGATAAGTAGGTGGGCCATTTTAACCTCATATATTTATAGTGGGTGATCACTGGGTTCCCCCA
*
19619 AGCCAAGGTGGATTCTTGTGGGGCACCCCCCATAGTTCACCACGGCATTGCAGAGCCCCGCATCT
196 AGCCAAGGTGGATTCTTGTGGGGCA-CCCCCACAGTTCACCACGGCATTGCAGAGCCCCGCATCT
*
19684 ATAGCGTGCTGCAGGCGGGCCTAGGGGCTTCGCAAGGCACACGTGGGCCTCGACAGGTTGGGCAG
260 ATAGCGTGCTGCAGGCGGGCCTAGGGGCTTCGCAAGGCACACGTGGGCCTCGACAGGTTAGGCAG
*
19749 TCACGCACCGATATCGCGCCCATACACGATAGAATCCCTAAGGGTGATCGCTGGACCCCATAACC
325 TCACGCACCGATATCGCGCCCATACACGATAGAATCCCTAAGGGTGATCGCTAGACCCCATAACC
19814 CAACA
390 CAACA
19819 GAAAGCATAG
Statistics
Matches: 372, Mismatches: 21, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
448 100 0.27
449 272 0.73
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (449 bp):
TGTTAGGATCAAATCATTCATTTCTAAACAACTTCCCAATGGGTCACCCATCCTTGGATTTCCCT
AGTCCAAGCACGCTTAACCACAGAGTTCTGAAGCGAATGATCACAATTCCTTCTTAAAACCAATT
GGTGATAAGTAGGTGGGCCATTTTAACCTCATATATTTATAGTGGGTGATCACTGGGTTCCCCCA
AGCCAAGGTGGATTCTTGTGGGGCACCCCCACAGTTCACCACGGCATTGCAGAGCCCCGCATCTA
TAGCGTGCTGCAGGCGGGCCTAGGGGCTTCGCAAGGCACACGTGGGCCTCGACAGGTTAGGCAGT
CACGCACCGATATCGCGCCCATACACGATAGAATCCCTAAGGGTGATCGCTAGACCCCATAACCC
AACAATCACCCCCAGCGACACCTGGGGGATTCGAACCTGCAACCTACTTTGATACCAGT
Found at i:29378 original size:21 final size:22
Alignment explanation
Indices: 29331--29384 Score: 83
Period size: 23 Copynumber: 2.5 Consensus size: 22
29321 CCCTAGGGGA
29331 TATCGATACACATTCAAGGAATG
1 TATCGATACACATTCAAGG-ATG
*
29354 TATCGGTACACATTCAAGG-TG
1 TATCGATACACATTCAAGGATG
29375 TATCGATACA
1 TATCGATACA
29385 TAACAAGGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 11 0.38
23 18 0.62
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (22 bp):
TATCGATACACATTCAAGGATG
Found at i:33867 original size:45 final size:46
Alignment explanation
Indices: 33811--33918 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
33801 TGCACCAATC
33811 CATGCATCGATGCACCATGA-ATTAAATTG-AACATCGAATGCATTT
1 CATGCATCGATGCACCATGAGATTAAA-TGAAACATCGAATGCATTT
* **
33856 CATGCAACGATGCA-C-TGAGGATTTTATGAAAACATCGAATGCATTT
1 CATGCATCGATGCACCATGA-GATTAAATG-AAACATCGAATGCATTT
*
33902 GATGCATCGATGCACCA
1 CATGCATCGATGCACCA
33919 GCCATGCATC
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
43 3 0.06
44 3 0.06
45 17 0.33
46 28 0.54
47 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (46 bp):
CATGCATCGATGCACCATGAGATTAAATGAAACATCGAATGCATTT
Found at i:35950 original size:21 final size:20
Alignment explanation
Indices: 35909--35961 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
35899 GGCTTCGGAT
* *
35909 TATAAGAAATTATTTTTAAAA
1 TATAA-AAATGATTTTCAAAA
35930 TATAAAAATGATGTTTCAAAA
1 TATAAAAATGAT-TTTCAAAA
*
35951 TTTAAAAATGA
1 TATAAAAATGA
35962 AAATAAACTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.38
Consensus pattern (20 bp):
TATAAAAATGATTTTCAAAA
Found at i:42660 original size:64 final size:65
Alignment explanation
Indices: 42548--42672 Score: 164
Period size: 64 Copynumber: 1.9 Consensus size: 65
42538 GAATGCATTT
* *
42548 CATGCATCGATGCACTGAGGATTTTATGAAAACATCAAATGCATTTGATACATCGATGCACCAGC
1 CATGCATCGATGCACTCAGGATTTTATGAAAACATCAAATGCACTTGATACATCGATGCACCAGC
* * ** *
42613 CATGCATCGATGCACTCTGGCTATTT-TG-AAACATTGAATGCACTTGATGCATCGATGCAC
1 CATGCATCGATGCACTCAGGAT-TTTATGAAAACATCAAATGCACTTGATACATCGATGCAC
42673 TGTTAGTGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
64 28 0.54
65 21 0.40
66 3 0.06
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (65 bp):
CATGCATCGATGCACTCAGGATTTTATGAAAACATCAAATGCACTTGATACATCGATGCACCAGC
Found at i:42687 original size:19 final size:19
Alignment explanation
Indices: 42660--42711 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
42650 ATGCACTTGA
* *
42660 TGCATCGATGCACTGTTAG
1 TGCACCGATGCACTCTTAG
42679 TGCACCGATGCACTCTTAG
1 TGCACCGATGCACTCTTAG
42698 TGCACCGATGCACT
1 TGCACCGATGCACT
42712 AAGGGTCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (19 bp):
TGCACCGATGCACTCTTAG
Found at i:48984 original size:29 final size:31
Alignment explanation
Indices: 48913--48985 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 31
48903 TTAAAATTAC
*
48913 ACTTTAGTCCCTAAACTTTTCTAAACTTTAT
1 ACTTTAGTCACTAAACTTTTCTAAACTTTAT
* * * *
48944 ACTTTGGCCACTTAAC-TTTC-AAATTTTAT
1 ACTTTAGTCACTAAACTTTTCTAAACTTTAT
*
48973 ATTTTAGTCACTA
1 ACTTTAGTCACTA
48986 TCCAAAATTT
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
29 17 0.52
30 4 0.12
31 12 0.36
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (31 bp):
ACTTTAGTCACTAAACTTTTCTAAACTTTAT
Found at i:53064 original size:25 final size:26
Alignment explanation
Indices: 53003--53081 Score: 72
Period size: 26 Copynumber: 3.1 Consensus size: 26
52993 AGTAGGATTC
*
53003 TAGTGTTAAAGTAGGATGCTAATAGT
1 TAGTGTTAAAGTAGGATGCTAAGAGT
* * *
53029 TA-TCTACAAAGTAGGATTCT-AGAGT
1 TAGTGT-TAAAGTAGGATGCTAAGAGT
* * *
53054 TAGTGTTAAAGTAAGATACTAATAGT
1 TAGTGTTAAAGTAGGATGCTAAGAGT
53080 TA
1 TA
53082 CATCTAAACG
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
25 19 0.46
26 22 0.54
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34
Consensus pattern (26 bp):
TAGTGTTAAAGTAGGATGCTAAGAGT
Found at i:53392 original size:183 final size:184
Alignment explanation
Indices: 53083--53443 Score: 625
Period size: 183 Copynumber: 2.0 Consensus size: 184
53073 TAATAGTTAC
* *
53083 ATCTAAACGCAACATAACTCACACTCCCCCTTAAGCTGTAGAGTAGATGTTAGTTATAGAGACCC
1 ATCTAAACGCAACATAACTCACACTCCCCCTTAAGCTGGAGAGTAGATGCTAGTTATAGAGACCC
*
53148 AGCTTGAATGTAATCTCATCGAAATTGATCTTTGGAAGCGCCTTAGTCAAGACATCGGCTAGTTG
66 AACTTGAATGTAATCTCATCGAAATTGATCTTTGGAAGCGCCTTAGTCAAGACATCGGCTAGTTG
*
53213 ATCTTTTGAAGAGACATAGTTTAACTTTACTGTTCCACCATTCACCTTTTAGCA
131 ATCTTTTGAAGAGACATAGTTTAACTTTACTGCTCCACCATTCACCTTTTAGCA
53267 ATCTAAACGCAACATAACTCACACT-CCCCTTAAGCTGGAGAGTAGATGCTAGTTATAGAGACCC
1 ATCTAAACGCAACATAACTCACACTCCCCCTTAAGCTGGAGAGTAGATGCTAGTTATAGAGACCC
* * * *
53331 AACTTGGATGTAATCTCTTCGAAATTGTTCTTTGGAAGCGCCTTAGTTAAGACATCGGCTAGTTG
66 AACTTGAATGTAATCTCATCGAAATTGATCTTTGGAAGCGCCTTAGTCAAGACATCGGCTAGTTG
* *
53396 ATCTTTTGAAGAGACATAGTTTAGCTTTACTGCTCCGCCATTCACCTT
131 ATCTTTTGAAGAGACATAGTTTAACTTTACTGCTCCACCATTCACCTT
53444 CTCAACAATG
Statistics
Matches: 167, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
183 142 0.85
184 25 0.15
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (184 bp):
ATCTAAACGCAACATAACTCACACTCCCCCTTAAGCTGGAGAGTAGATGCTAGTTATAGAGACCC
AACTTGAATGTAATCTCATCGAAATTGATCTTTGGAAGCGCCTTAGTCAAGACATCGGCTAGTTG
ATCTTTTGAAGAGACATAGTTTAACTTTACTGCTCCACCATTCACCTTTTAGCA
Found at i:56547 original size:19 final size:20
Alignment explanation
Indices: 56501--56549 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
56491 TCTAATATTA
56501 TAAAAATATGTATATATAAAG
1 TAAAAATATG-ATATATAAAG
*
56522 TATAAATATG-TATATAAA-
1 TAAAAATATGATATATAAAG
56540 TACAAAATAT
1 TA-AAAATAT
56550 TCACACATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 2 0.08
19 14 0.56
21 9 0.36
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (20 bp):
TAAAAATATGATATATAAAG
Found at i:68620 original size:13 final size:15
Alignment explanation
Indices: 68586--68622 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
68576 ATTAACATCT
68586 TTAAAAAATATATAG
1 TTAAAAAATATATAG
*
68601 TTTAAAAATAT-TA-
1 TTAAAAAATATATAG
68614 TTAAAAAAT
1 TTAAAAAAT
68623 TATCTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 2 0.10
15 10 0.50
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
TTAAAAAATATATAG
Done.