Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005621.1 Hibiscus syriacus cultivar Beakdansim tig00013073_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79338

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
666--732
29
2.2
30
82
10
75
28
17
1
52
1.54
7615--7649
13
2.7
13
86
0
52
48
14
0
37
1.44
8782--9059
39
7.1
39
77
4
240
34
22
25
17
1.96
8770--9049
117
2.4
116
83
3
337
33
22
26
17
1.96
10341--10396
29
1.9
29
92
0
94
35
16
7
41
1.75
12557--12593
14
2.6
15
83
12
51
24
8
0
67
1.17
12802--12842
18
2.2
19
91
4
66
12
7
0
80
0.90
16645--17584
84
11.4
83
76
8
794
31
23
19
25
1.98
16645--17594
164
5.8
162
80
9
813
31
23
19
25
1.98
16629--17666
248
4.2
248
79
7
1008
32
22
19
25
1.98
16893--17596
328
2.2
326
84
4
911
31
23
19
25
1.98
18731--18763
17
1.9
17
93
0
57
75
0
12
12
1.04
18954--19032
36
2.3
34
80
8
88
74
2
6
16
1.13
18987--19048
17
3.8
16
77
16
65
77
1
4
16
1.02
18970--19025
17
3.1
18
76
7
60
76
0
7
16
0.99
19013--19050
13
2.6
15
80
19
53
76
2
2
18
1.02
18987--19032
18
2.4
19
75
17
51
80
0
4
15
0.86
19158--19227
24
3.1
21
76
17
70
72
1
7
18
1.14
21024--21458
36
12.5
36
69
12
211
41
12
18
27
1.87
21024--21114
37
2.5
36
83
3
119
40
13
21
24
1.89
21021--21450
172
2.5
172
83
3
517
42
12
18
26
1.86
21309--21459
36
4.2
36
88
3
225
39
11
17
31
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21322--21459
71
1.9
72
94
1
242
41
12
16
29
1.85
22784--23045
95
2.7
94
83
4
292
33
16
16
33
1.92
28152--28194
17
2.6
16
82
7
50
81
0
6
11
0.87
28216--28316
37
2.7
37
88
10
145
52
3
0
42
1.26
28334--28368
2
18.0
2
94
5
63
48
0
0
51
1.00
28428--28559
39
3.5
38
78
9
137
41
5
3
49
1.43
28351--28618
35
7.4
37
73
16
163
42
7
4
45
1.52
28350--28586
39
6.5
36
68
16
123
41
6
4
47
1.49
28494--28609
34
3.3
35
80
11
105
47
6
2
43
1.44
38723--38796
38
1.9
39
88
2
114
29
24
24
21
1.99
40497--40731
45
5.3
46
80
7
254
23
20
11
44
1.84
40530--40731
91
2.2
91
84
3
255
23
20
11
44
1.84
42042--42436
196
2.0
200
96
3
737
26
22
14
36
1.93
50607--50687
30
2.8
29
77
15
87
39
6
17
37
1.75
57331--57572
46
5.3
46
90
0
376
23
21
11
43
1.85
59163--59227
30
2.2
30
86
5
87
41
16
6
35
1.74
59909--59975
19
3.2
21
72
12
66
49
0
4
46
1.22
74183--74207
12
2.1
12
100
0
50
16
8
16
60
1.58
74283--74319
16
2.4
16
91
8
60
37
24
5
32
1.78
77050--77095
22
2.3
20
85
14
60
30
39
4
26
1.75

Tables:   1

The End!