Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005624.1 Hibiscus syriacus cultivar Beakdansim tig00013095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116385

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4488--4530
18
2.3
18
85
14
61
51
13
2
32
1.54
16818--16843
13
2.0
13
100
0
52
23
30
23
23
1.99
18444--18481
20
1.9
20
88
0
58
21
10
7
60
1.54
18738--18801
26
2.4
27
81
5
76
32
1
20
45
1.61
18954--19011
23
2.5
23
85
0
80
41
22
17
18
1.90
18911--19069
57
2.8
57
82
0
165
40
20
16
22
1.91
19019--19092
23
3.2
23
76
1
76
40
18
14
25
1.89
19089--19116
14
2.0
14
100
0
56
57
7
14
21
1.61
24482--24506
3
8.3
3
100
0
50
36
0
0
64
0.94
29100--29124
2
12.5
2
100
0
50
48
0
0
52
1.00
30399--30469
21
3.4
21
88
3
99
32
0
1
66
1.01
30407--30469
12
5.8
11
77
22
53
33
0
1
65
1.03
30399--30457
3
19.7
3
83
13
77
30
0
1
67
1.00
32043--32084
20
2.2
19
86
4
57
33
0
2
64
1.07
31940--32175
120
2.0
117
85
7
318
38
6
8
47
1.60
34227--34268
7
6.0
7
81
8
50
14
16
14
54
1.71
34227--34268
15
3.0
14
83
10
50
14
16
14
54
1.71
35987--36048
2
31.0
2
100
0
124
50
0
0
50
1.00
36357--36390
11
3.2
11
91
4
52
88
0
11
0
0.52
36342--36390
10
4.8
10
84
2
62
81
0
18
0
0.69
38657--38880
114
2.0
114
93
0
385
33
16
20
29
1.94
41538--41617
22
3.6
22
89
0
115
32
15
13
38
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42364--43225
113
7.7
113
87
2
1207
37
14
19
28
1.91
42364--43225
449
1.9
449
93
1
1478
37
14
19
28
1.91
42364--43342
113
8.6
113
85
5
1162
37
14
19
27
1.91
43571--43617
3
15.7
3
82
8
60
36
0
0
63
0.94
45202--45243
20
2.2
19
86
4
57
33
0
2
64
1.07
45098--45334
120
2.0
117
84
6
309
37
7
8
46
1.61
46565--46636
31
2.2
32
85
4
92
20
26
8
44
1.80
48318--48378
6
10.2
6
96
0
95
29
49
16
4
1.66
48376--48424
5
9.8
5
93
0
62
16
36
40
6
1.73
54289--54373
6
14.2
6
97
0
134
29
49
16
4
1.66
54371--54424
5
10.8
5
93
0
72
16
37
40
5
1.72
90383--90442
21
2.8
22
73
12
61
16
25
31
26
1.96
94259--94301
20
2.2
20
83
8
52
37
4
2
55
1.33
109912--109983
32
2.3
31
80
15
78
43
1
2
52
1.24
113289--113324
16
2.2
17
90
5
56
13
13
19
52
1.74

Tables:   1

The End!