genome.fa.s5628.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005628.1 Hibiscus syriacus cultivar Beakdansim tig00013111_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55807

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194--231	20	1.9	20	94	0	67	28	21	10	39	1.86
1502--1579	8	10.1	7	76	16	59	76	1	17	3	1.00
1523--1579	19	3.1	18	78	16	62	78	0	19	1	0.83
3544--3914	54	6.8	54	82	6	318	30	10	17	41	1.83
3544--3902	109	3.3	108	79	5	364	31	10	16	40	1.83
3546--3871	165	2.0	164	81	3	386	31	10	16	41	1.82
3606--3918	110	2.9	109	78	6	260	30	10	17	41	1.83
4701--5209	139	3.7	139	85	6	726	35	18	22	24	1.96
9245--9285	17	2.4	18	80	12	50	39	2	0	58	1.11
9406--9597	51	3.8	50	82	5	235	27	13	14	45	1.81
9406--9597	100	1.9	101	83	7	248	27	13	14	45	1.81
19965--20069	39	2.7	39	85	2	122	33	14	23	28	1.94
21085--21241	62	2.5	62	85	2	208	28	21	15	35	1.93
21294--21669	137	2.8	136	88	2	522	28	25	17	28	1.97
22415--22439	13	1.9	13	100	0	50	20	48	16	16	1.82
22507--22552	24	1.9	24	90	0	74	30	6	6	56	1.50
22572--22629	29	2.0	30	89	3	91	31	3	17	48	1.64
28144--28199	29	1.9	29	81	0	67	33	7	21	37	1.81
28273--28330	29	2.0	30	82	3	73	31	5	13	50	1.64
33567--33737	89	1.9	90	84	8	213	56	4	3	35	1.37
35500--35540	17	2.3	18	91	4	66	31	0	0	68	0.90
39017--39116	46	2.2	46	98	0	191	32	9	24	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48264--48722	134	3.4	134	84	4	559	33	23	15	26	1.95
49355--49379	7	3.6	7	100	0	50	88	0	0	12	0.53
53614--53665	19	2.8	20	74	11	56	50	0	0	50	1.00

Tables:   1

The End!