genome.fa.s5629.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005629.1 Hibiscus syriacus cultivar Beakdansim tig00013120_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107709

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1588--1655	9	7.7	9	76	14	54	4	16	1	77	0.99
1578--1663	28	3.1	25	78	20	75	4	17	1	76	1.01
1615--1671	17	3.4	17	83	13	73	3	17	0	78	0.88
1588--1680	27	3.4	26	74	11	80	3	16	1	79	0.92
1601--1681	18	4.8	17	76	8	76	3	18	0	77	0.91
7490--7541	26	2.0	25	85	3	68	42	9	0	48	1.36
10991--11020	7	4.3	7	100	0	60	30	13	13	43	1.82
11573--11624	6	8.5	6	81	10	61	80	3	15	0	0.85
11560--11620	12	5.1	12	82	7	70	80	8	11	0	0.91
17309--17334	13	2.0	13	100	0	52	46	0	0	53	1.00
19842--19939	24	3.8	24	71	22	74	53	4	9	33	1.52
19842--19947	55	1.9	56	92	5	180	52	3	8	34	1.50
19940--19973	2	17.0	2	100	0	68	50	0	0	50	1.00
19993--20165	31	5.6	30	74	12	127	56	0	4	38	1.25
23227--24847	815	2.0	811	97	0	3037	33	10	21	35	1.87
24785--24824	20	2.0	21	95	5	73	10	30	32	27	1.89
25169--25197	15	2.0	15	93	6	51	58	13	13	13	1.63
25475--25527	18	2.7	19	77	14	54	22	24	28	24	2.00
31049--31092	19	2.3	19	80	0	52	61	15	4	18	1.50
35373--35408	15	2.4	15	95	0	63	36	5	16	41	1.72
35739--35789	23	2.2	23	82	0	57	45	1	1	50	1.24
35874--35942	31	2.3	30	78	16	79	49	0	1	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35892--35939	23	2.1	23	84	7	62	52	0	0	47	1.00
35885--35936	17	3.2	17	71	15	56	48	0	0	51	1.00
35895--35956	21	2.9	22	79	11	67	51	0	0	48	1.00
36170--36260	42	2.2	42	88	4	130	50	18	12	18	1.77
36460--36502	21	2.0	21	90	0	68	16	25	18	39	1.91
37289--37338	24	2.1	24	92	0	82	22	20	20	38	1.94
38700--38913	20	10.6	20	78	6	234	19	19	24	36	1.94
38702--38913	41	5.2	41	92	1	338	19	18	24	37	1.94
47590--47631	21	2.0	21	100	0	84	38	9	28	23	1.86
50754--50799	5	9.4	5	90	4	76	2	19	56	21	1.52
50734--50797	24	2.7	24	85	0	83	6	18	51	23	1.69
50843--50885	9	4.4	9	78	16	50	30	27	30	11	1.92
57934--57972	17	2.3	17	90	0	60	12	17	46	23	1.83
57970--58037	19	3.5	19	84	9	77	29	29	26	14	1.95
57977--58053	10	7.9	9	72	16	64	31	28	25	14	1.95
57981--58050	19	3.5	20	75	14	65	31	28	25	14	1.95
64679--64735	28	2.0	28	96	0	105	28	22	12	36	1.90
65411--65446	6	5.8	6	96	3	63	13	2	50	33	1.57
70831--70864	11	3.1	11	91	0	50	29	0	2	67	1.05
78067--78123	30	1.9	30	85	0	78	49	8	7	35	1.61
80413--80480	26	2.8	26	85	14	85	51	2	0	45	1.16
80423--80538	20	5.8	20	80	13	123	48	2	0	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80424--80539	2	61.5	2	73	20	72	48	2	0	48	1.21
80421--80568	20	7.3	19	71	18	77	50	3	0	45	1.23
88530--88664	23	6.1	22	71	19	102	52	4	0	42	1.21
88538--88594	27	2.0	29	83	6	73	54	3	0	42	1.17
88570--88614	17	2.6	17	80	13	56	53	4	0	42	1.21
88546--88665	44	2.7	44	80	16	140	52	5	0	42	1.23
88546--88637	40	2.2	43	88	7	136	52	6	0	41	1.27
88535--88662	65	2.0	64	83	11	163	53	4	0	41	1.21
88648--88678	2	16.0	2	93	6	55	51	0	0	48	1.00
94594--94718	21	5.8	21	73	12	83	36	27	14	22	1.93
94586--94675	23	4.0	23	73	15	80	34	26	15	23	1.95
95999--96089	23	4.1	22	78	14	98	23	16	26	34	1.95
95956--96089	21	6.1	21	75	12	92	23	14	26	35	1.93
100816--100859	22	2.0	22	100	0	88	54	13	13	18	1.71
102315--102399	39	2.2	39	85	4	118	54	2	2	41	1.26
106166--106210	23	1.9	24	81	4	56	37	15	22	24	1.93

Tables:   1

The End!