genome.fa.s563.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000563.1 Hibiscus syriacus cultivar Beakdansim tig00001101_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75521

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488--532	23	1.9	24	90	4	74	42	2	11	44	1.52
2335--2378	5	9.2	5	80	9	56	2	18	56	22	1.52
2334--2379	14	3.3	14	87	0	74	2	19	54	23	1.55
2375--2412	19	2.0	19	94	0	67	26	23	26	23	2.00
2334--2380	24	1.9	25	87	12	71	2	19	53	25	1.56
9640--9669	5	6.2	5	92	7	53	0	20	60	20	1.37
9640--9669	14	2.1	15	93	6	53	0	20	60	20	1.37
9639--9669	9	3.3	9	91	8	53	0	22	58	19	1.40
9675--9711	19	1.9	19	88	0	56	35	29	18	16	1.93
14662--14691	14	2.1	14	100	0	60	23	6	30	40	1.80
15742--15830	18	4.9	18	81	0	115	22	25	17	33	1.96
15742--15842	36	2.8	36	84	0	130	23	24	17	33	1.96
15743--15858	54	2.1	54	80	0	133	24	23	17	35	1.95
19365--19394	14	2.1	14	100	0	60	23	6	30	40	1.80
22289--22414	42	3.0	42	100	0	252	50	7	2	40	1.43
23261--23333	23	3.2	23	88	0	101	36	5	20	36	1.76
23738--23810	23	3.2	23	92	0	119	34	5	21	38	1.77
24216--24288	23	3.2	23	88	0	101	36	5	20	36	1.76
22838--26232	477	7.1	477	96	1	6163	41	7	10	40	1.68
24693--24765	23	3.2	23	92	0	119	34	5	21	38	1.77
25168--25240	23	3.2	23	90	0	110	35	5	20	38	1.76
22838--26232	952	3.5	953	98	0	6416	41	7	10	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25645--25717	23	3.2	23	92	0	119	34	5	21	38	1.77
26122--26194	23	3.2	23	92	0	119	34	5	21	38	1.77
26976--27082	24	4.5	24	74	0	97	47	16	14	21	1.82
26976--27084	48	2.3	48	77	0	119	47	16	14	21	1.82
28042--28150	29	3.7	29	76	6	103	28	5	23	42	1.76
29956--30027	23	3.1	23	89	0	108	34	4	20	40	1.72
30502--30548	20	2.4	19	82	10	67	53	10	17	19	1.72
32826--32854	15	1.9	15	100	0	58	20	6	55	17	1.65
32939--33003	21	3.1	21	90	0	94	43	10	29	16	1.82
33037--33099	33	1.9	33	90	0	99	28	0	49	22	1.50
34898--34946	19	2.6	19	96	0	89	32	2	10	55	1.45
35180--36341	200	5.8	200	95	1	2035	35	14	19	30	1.91
37830--37887	12	4.8	12	84	0	53	37	6	32	22	1.81
37847--37891	3	15.0	3	90	0	63	35	4	33	26	1.77
39100--39505	183	2.2	182	93	2	679	34	14	16	34	1.89
42091--42135	22	2.0	22	83	8	56	42	11	8	37	1.72
42161--42224	23	2.8	23	88	2	94	35	6	20	37	1.78
42153--42229	23	3.5	21	81	8	75	36	5	20	37	1.75
42578--42623	23	2.0	22	84	12	58	43	10	8	36	1.71
43012--43057	21	2.2	21	88	0	65	26	28	23	21	1.99
43518--43579	21	3.0	21	95	0	106	29	27	17	25	1.98
43869--43919	16	2.8	18	74	17	52	50	5	13	29	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44289--44355	23	2.9	23	95	0	116	31	26	25	16	1.96
62735--62796	23	2.7	23	79	0	70	46	8	16	29	1.75
62719--62958	87	2.8	87	89	0	372	43	9	14	32	1.77
62971--63637	198	3.4	199	89	3	945	30	16	14	38	1.88
63814--63858	14	3.1	15	81	9	58	57	2	0	40	1.11
64472--64590	33	3.7	32	77	17	90	47	1	1	48	1.21
64507--64616	14	7.9	14	69	11	57	49	1	0	48	1.18
64529--64597	28	2.5	28	74	6	70	49	1	1	47	1.19
64580--64624	14	3.1	15	84	6	58	55	2	0	42	1.12
64615--64687	21	3.5	22	75	16	82	41	4	0	54	1.19
65061--65111	23	2.2	23	89	0	75	33	19	9	37	1.85
64966--65194	87	2.6	87	91	0	379	34	14	8	42	1.76
65061--65330	109	2.5	110	87	0	398	33	14	9	42	1.79
65266--65341	23	3.3	23	90	0	116	36	18	6	38	1.77
65957--65982	11	2.4	11	100	0	52	23	11	23	42	1.86
66792--66870	25	3.2	25	73	16	74	24	0	32	43	1.55
66822--66910	25	3.5	25	72	3	79	25	1	37	35	1.64
66795--66913	51	2.3	51	89	0	175	26	0	34	38	1.62
70506--70626	24	5.0	25	64	7	61	39	4	14	41	1.67
70498--70626	49	2.7	49	89	3	181	38	4	13	42	1.66
71138--71226	42	2.1	42	87	0	124	20	22	32	24	1.98
72600--72659	22	2.7	23	79	5	70	53	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72579--72666	24	3.7	25	75	20	73	54	1	0	44	1.07
72650--72689	19	2.2	19	86	4	55	62	2	0	35	1.09
72617--72685	33	2.1	32	84	12	88	55	2	0	42	1.15
72651--72711	20	3.0	20	81	11	63	60	3	0	36	1.13

Tables:   1

The End!