Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005630.1 Hibiscus syriacus cultivar Beakdansim tig00013121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86266

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2890--2931
21
2.0
22
90
4
68
69
0
0
30
0.89
3503--3572
21
3.3
21
87
0
95
31
34
11
22
1.90
4620--4664
22
2.0
24
83
16
60
55
8
2
33
1.43
9689--9725
12
3.1
12
100
0
74
40
8
43
8
1.64
14895--14919
12
2.1
12
100
0
50
40
8
44
8
1.63
36004--36032
15
1.9
15
100
0
58
62
0
0
37
0.96
36077--36155
40
2.1
39
83
7
99
37
5
3
53
1.41
46526--46664
44
3.2
44
88
6
210
41
12
21
24
1.88
47011--47275
44
6.0
44
88
0
379
39
12
22
25
1.89
52622--52648
8
3.4
8
100
0
54
62
0
25
11
1.28
53864--54122
44
5.9
44
84
6
303
41
12
20
25
1.87
61299--61336
6
5.6
7
90
9
53
86
0
13
0
0.56
61293--61328
6
5.8
6
90
6
54
86
0
11
2
0.68
61447--61528
23
3.5
23
80
11
80
73
1
2
23
1.03
62517--62672
65
2.4
64
83
3
197
29
19
21
29
1.98
62674--62713
20
2.0
20
90
0
62
25
20
30
25
1.99
63345--63370
13
2.0
13
100
0
52
46
30
0
23
1.53
63308--63455
69
2.1
69
100
0
296
50
22
2
24
1.62
63414--63439
13
2.0
13
100
0
52
46
30
0
23
1.53
63416--63456
22
1.9
21
90
5
64
51
29
0
19
1.47
65374--65464
23
4.2
22
70
14
73
29
21
23
25
1.99
68111--68161
22
2.3
22
96
0
93
50
15
11
21
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71243--71398
65
2.4
65
86
3
217
28
19
23
28
1.98
72028--72069
22
1.9
22
100
0
84
28
14
33
23
1.94
72779--72836
23
2.5
23
85
0
71
48
12
3
36
1.57
85051--85093
5
9.0
5
80
10
54
74
2
2
20
1.04
85051--85104
23
2.3
23
87
0
72
72
3
1
22
1.10
85025--85090
18
3.5
18
74
14
62
71
3
4
21
1.18
85135--85167
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!