Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005631.1 Hibiscus syriacus cultivar Beakdansim tig00013127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84833

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6907--6959
27
2.0
27
92
0
88
32
13
22
32
1.92
7473--7531
24
2.5
24
88
0
91
16
13
18
50
1.77
7473--7529
12
4.8
12
74
8
53
15
14
19
50
1.77
7688--7717
2
15.0
2
100
0
60
50
0
0
50
1.00
11589--11619
16
1.9
16
100
0
62
25
32
0
41
1.56
17979--18049
18
3.9
18
92
0
115
29
32
19
18
1.96
22254--22397
39
3.7
39
83
1
128
34
20
26
19
1.96
22293--22400
39
2.8
39
87
2
137
33
23
26
16
1.96
23172--23226
20
2.7
20
97
2
101
38
25
21
14
1.92
23172--23228
14
4.2
13
74
14
53
36
24
22
15
1.94
23617--23649
16
2.1
16
88
5
50
66
0
18
15
1.25
28385--28420
2
18.0
2
100
0
72
50
0
0
50
1.00
30276--30301
2
13.0
2
100
0
52
50
0
50
0
1.00
31249--31311
26
2.4
26
81
5
74
34
0
3
61
1.12
32343--32369
2
13.5
2
100
0
54
51
0
0
48
1.00
32400--32452
28
1.9
27
81
11
63
37
3
3
54
1.36
34166--34281
21
6.0
20
76
18
129
21
36
28
13
1.92
34168--34279
36
3.0
37
86
13
151
21
35
28
14
1.92
34394--34435
21
2.0
21
95
0
75
23
21
28
26
1.99
34464--34503
20
1.9
21
85
10
55
37
37
10
15
1.80
35646--35693
19
2.5
20
82
3
62
52
6
12
29
1.63
37143--37221
20
3.9
20
91
3
131
24
31
30
13
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37143--37222
41
2.0
41
94
0
142
23
31
30
15
1.95
37335--37376
21
2.0
21
95
0
75
23
21
28
26
1.99
37405--37444
20
1.9
21
85
10
55
37
37
10
15
1.80
40460--40499
2
20.0
2
90
10
64
50
0
2
47
1.14
40748--40791
23
1.9
24
86
9
65
31
11
0
56
1.35
41626--41667
2
21.0
2
90
9
68
50
0
2
47
1.14
41916--41959
23
1.9
24
86
9
65
31
11
0
56
1.35
45132--45178
24
2.0
24
86
0
67
38
25
19
17
1.92
45145--45266
23
5.4
23
82
6
117
33
25
25
15
1.95
55081--55125
23
2.0
23
86
0
63
37
22
22
17
1.94
63577--63610
17
2.0
17
94
0
59
29
11
8
50
1.69
64182--64239
26
2.3
26
80
17
68
53
1
3
41
1.28
64212--64242
15
2.1
15
93
0
53
61
0
3
35
1.12
69725--69778
27
2.0
28
85
3
74
35
22
12
29
1.91
75218--75251
12
2.7
13
86
9
52
38
5
11
44
1.65
76980--77012
12
2.6
13
90
4
50
45
6
12
36
1.66
83457--83484
14
2.0
14
100
0
56
35
28
0
35
1.58

Tables:   1

The End!