genome.fa.s5633.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005633.1 Hibiscus syriacus cultivar Beakdansim tig00013133_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85755

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745--797	23	2.2	24	90	3	81	9	16	13	60	1.58
8142--8168	12	2.2	12	100	0	54	14	33	7	44	1.73
9750--10441	344	2.0	347	91	3	1137	41	10	18	30	1.83
15935--15986	19	2.6	21	87	6	72	46	3	13	36	1.62
18599--19268	337	2.0	333	96	1	1241	34	12	25	27	1.91
21271--21310	20	1.9	20	85	10	53	32	7	32	27	1.85
22638--22667	13	2.4	13	94	5	53	26	30	0	43	1.55
25419--25464	20	2.2	22	77	18	62	8	15	15	60	1.57
26817--26856	20	1.9	20	85	10	53	32	7	32	27	1.85
30297--30349	23	2.2	24	90	3	81	9	16	13	60	1.58
36872--36905	16	2.1	17	89	10	54	11	23	0	64	1.26
39356--40055	350	2.0	349	92	1	1152	41	9	17	30	1.82
45850--45905	20	2.8	20	84	7	78	73	5	16	5	1.21
45850--45912	21	3.3	19	81	12	76	73	4	17	4	1.19
58590--58635	21	2.0	24	84	12	62	26	13	15	45	1.82
59136--59169	13	2.6	13	85	0	50	32	0	35	32	1.58
67635--67664	13	2.4	13	94	5	53	43	0	30	26	1.55
71702--71787	11	7.3	11	72	22	68	31	36	3	29	1.74
71699--71803	36	2.9	36	94	1	176	30	35	4	29	1.78
71982--72020	19	2.1	19	100	0	78	33	25	0	41	1.56
74600--74650	19	2.6	20	87	3	68	45	5	15	33	1.71
78234--78296	27	2.5	24	80	16	81	4	22	4	68	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78241--78298	27	2.1	28	93	3	100	5	20	5	68	1.28
79508--79576	33	2.1	33	83	5	86	31	1	36	30	1.67
79562--79646	13	7.2	12	72	25	58	29	3	36	30	1.74
79547--79647	35	2.9	36	92	2	161	26	4	35	32	1.78
83303--83366	33	1.9	32	81	12	76	57	0	25	17	1.39
83977--84045	33	2.1	33	86	5	95	33	1	34	30	1.67
84016--84117	36	2.9	36	89	1	152	28	4	34	32	1.79

Tables:   1

The End!