Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005634.1 Hibiscus syriacus cultivar Beakdansim tig00013135_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80222

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6503--6531
12
2.5
12
94
5
51
58
0
13
27
1.36
6577--6617
21
2.0
21
95
0
73
26
0
36
36
1.57
9675--9741
27
2.4
27
80
12
73
11
14
4
68
1.35
9781--9819
13
3.2
13
85
10
55
0
15
2
82
0.79
10202--10242
14
3.1
13
89
3
55
39
0
39
21
1.54
18779--18815
17
2.2
17
95
0
65
37
0
32
29
1.58
19733--19803
18
3.9
18
70
18
58
78
4
15
1
0.97
19741--19819
39
2.0
40
82
12
99
77
5
12
5
1.10
26020--26064
21
2.3
18
85
11
54
75
4
17
2
1.07
34613--34653
22
1.9
21
90
5
64
36
34
2
26
1.70
34967--35023
24
2.5
24
86
11
75
75
1
10
12
1.12
37894--37925
2
16.0
2
100
0
64
50
0
0
50
1.00
39122--39162
22
1.9
21
90
5
64
36
34
2
26
1.70
39476--39532
24
2.5
24
86
11
75
75
1
10
12
1.12
43492--43547
22
2.5
23
85
8
71
30
32
3
33
1.75
44482--44541
30
2.0
31
86
3
86
28
8
10
53
1.63
45439--45488
20
2.5
20
87
3
66
38
12
6
44
1.66
45902--45950
19
2.5
20
78
21
59
24
8
0
67
1.18
47714--47767
19
2.7
20
82
11
65
18
40
20
20
1.91
50551--50602
21
2.6
21
90
6
81
34
13
5
46
1.67
51309--51385
26
2.9
27
73
19
72
71
3
16
7
1.25
53245--53284
16
2.5
16
100
0
80
30
27
10
32
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53627--53678
21
2.6
19
87
6
68
36
13
3
46
1.62
58351--58394
23
1.9
23
95
0
79
22
25
27
25
2.00
64599--64775
54
3.3
54
89
0
273
27
18
20
34
1.95
69508--69541
14
2.5
14
85
4
52
0
20
2
76
0.92
69539--69586
25
1.9
25
82
0
60
10
8
18
62
1.52

Tables:   1

The End!