genome.fa.s5636.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005636.1 Hibiscus syriacus cultivar Beakdansim tig00013140_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174214

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11313--11356	21	2.1	21	82	0	52	4	6	11	77	1.11
14521--14551	12	2.6	12	94	0	53	29	16	0	54	1.42
18747--18814	35	1.9	36	90	3	111	29	2	35	32	1.73
22146--22198	16	3.2	16	77	17	56	66	0	18	15	1.26
23734--23818	11	7.2	11	72	22	66	31	36	3	28	1.74
23731--23835	36	2.9	36	95	1	185	30	36	4	28	1.78
24205--24250	23	2.0	22	84	12	58	78	4	17	0	0.91
24272--24318	14	3.1	15	75	12	51	72	6	19	2	1.17
28207--28291	11	7.2	11	72	22	66	31	36	3	28	1.74
28204--28308	36	2.9	36	95	1	185	30	36	4	28	1.78
34155--34186	16	2.1	15	94	5	55	12	40	12	34	1.81
36672--36732	10	5.8	10	76	16	61	80	16	3	0	0.84
36672--36732	22	2.7	23	77	5	63	80	16	3	0	0.84
36673--36733	31	2.0	31	87	12	90	78	16	4	0	0.91
42748--42787	20	1.9	20	85	10	53	32	7	32	27	1.85
42997--43032	15	2.4	15	90	0	54	52	2	2	41	1.30
51334--51358	11	2.3	11	100	0	50	16	36	8	40	1.77
52656--52696	20	2.0	20	85	9	55	31	7	31	29	1.85
52905--52940	15	2.4	15	90	0	54	52	2	2	41	1.30
55170--55302	69	1.9	68	92	1	221	24	27	15	31	1.96
60485--60564	35	2.2	37	88	4	119	32	37	2	27	1.70
60518--60564	11	4.1	11	80	20	60	36	36	2	25	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60518--60564	24	2.0	24	84	15	64	36	36	2	25	1.68
63020--63150	69	1.9	68	90	1	208	25	28	13	32	1.94
64820--64861	20	2.2	20	95	4	77	38	11	4	45	1.62
66397--66438	17	2.5	17	92	0	66	30	14	9	45	1.77
66934--66992	29	2.0	29	96	0	109	38	15	13	32	1.86
68439--68491	6	8.5	6	79	8	61	16	0	50	32	1.46
68454--68496	18	2.4	18	84	0	59	23	0	48	27	1.51
70369--70550	90	2.0	91	90	1	285	27	23	28	20	1.99
72720--72820	33	3.0	33	80	11	82	32	1	33	31	1.69
76654--76754	33	3.0	33	80	11	82	32	1	33	31	1.69
78454--78500	14	3.1	15	75	12	51	72	6	19	2	1.17
82383--82462	35	2.2	37	84	4	110	32	36	2	28	1.71
82416--82462	11	4.1	11	77	20	51	36	34	2	27	1.69
87540--87601	8	7.9	8	75	15	58	4	17	1	75	1.05
87527--87596	13	5.5	12	75	16	61	4	18	1	75	1.04
87538--87594	30	1.9	29	86	10	80	5	17	1	75	1.07
87526--87602	30	2.6	29	77	18	79	3	19	1	75	1.03
88480--88539	6	9.8	6	84	8	50	58	1	1	38	1.18
88482--88521	2	20.0	2	89	0	62	55	0	0	45	0.99
89454--89555	34	2.9	36	88	7	163	26	14	13	45	1.83
90103--90934	105	8.0	105	92	1	1296	22	17	26	33	1.96
91564--91898	65	4.9	67	72	12	238	40	11	19	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91713--91918	36	5.9	35	75	15	185	42	13	18	25	1.87
91658--91920	138	1.9	138	89	1	411	41	12	19	26	1.87
91852--91952	36	2.8	36	82	7	109	40	17	20	20	1.91
91848--91968	35	3.4	35	73	14	113	38	15	19	25	1.92
92845--92893	22	2.2	22	96	0	89	30	14	22	32	1.93
92853--92900	22	2.2	22	88	0	69	31	12	22	33	1.91
96585--96617	9	3.7	9	100	0	66	78	0	0	21	0.75
96673--96712	2	20.0	2	100	0	80	50	0	0	50	1.00
96909--96965	21	2.8	20	73	7	60	73	1	1	22	1.02
97152--97180	2	14.5	2	100	0	58	51	0	0	48	1.00
97178--97281	3	35.3	3	70	19	53	64	1	2	30	1.19
97671--97773	35	2.8	38	86	11	169	28	13	13	44	1.82
104543--104606	27	2.4	27	100	0	128	18	34	3	43	1.66
108746--108792	22	2.2	20	85	14	60	2	10	6	80	0.96
109169--109317	36	4.1	36	87	0	199	30	4	37	27	1.77
111865--111914	14	3.9	13	73	21	52	78	2	20	0	0.86
111859--111914	19	3.1	18	82	17	71	78	1	19	0	0.84
115787--115866	35	2.3	33	83	10	90	31	37	2	28	1.71
119654--119696	23	1.9	21	81	13	50	34	16	13	34	1.88
125002--125038	15	2.4	16	90	4	58	13	10	5	70	1.32
125389--125452	8	8.0	8	80	13	78	82	10	6	0	0.82
125391--125452	15	3.9	15	78	17	72	83	9	6	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125389--125463	33	2.2	34	86	6	100	80	12	8	0	0.92
125426--125463	20	1.9	20	88	0	58	78	10	10	0	0.95
144212--144276	11	5.8	11	80	8	69	1	12	10	75	1.12
145670--145729	24	2.6	23	77	17	70	8	16	10	65	1.47
148699--148728	13	2.4	13	94	5	53	36	0	36	26	1.57
152080--152130	19	2.6	20	90	3	77	43	5	15	35	1.71
153030--153089	30	2.0	31	83	3	77	51	10	10	28	1.67
172326--172358	17	1.9	17	93	0	57	39	0	30	30	1.57

Tables:   1

The End!