genome.fa.s5639.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005639.1 Hibiscus syriacus cultivar Beakdansim tig00013144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74359

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2037--2163	63	2.0	63	100	0	254	51	7	6	34	1.56
2607--2665	30	2.0	30	93	0	100	20	20	3	55	1.57
2940--2966	14	1.9	14	100	0	54	29	11	0	59	1.32
5243--5272	10	3.0	10	95	0	51	20	10	16	53	1.71
8295--8369	29	2.5	30	84	4	116	13	25	37	24	1.91
8398--8426	14	2.1	14	100	0	58	27	20	31	20	1.98
9734--9779	23	2.0	23	82	0	56	23	26	36	13	1.91
20452--20496	21	2.1	21	95	0	81	20	24	17	37	1.93
20387--20520	20	6.6	21	74	5	78	30	24	15	29	1.96
20489--20541	20	2.7	20	90	0	79	41	24	15	18	1.89
21433--21486	24	2.2	24	93	0	90	20	18	20	40	1.91
21661--21700	3	13.3	3	89	0	62	70	0	30	0	0.88
24243--24294	25	2.1	25	92	0	86	30	7	15	46	1.74
24663--24725	24	2.6	25	78	9	60	38	3	11	47	1.55
24674--24726	24	2.2	24	86	0	70	39	1	11	47	1.50
25030--25116	39	2.2	39	93	0	147	49	20	11	18	1.78
25284--25326	20	2.2	20	95	0	77	41	23	18	16	1.89
28645--28676	13	2.5	13	94	0	55	75	15	9	0	1.05
28885--28931	22	2.1	22	88	0	67	25	14	38	21	1.92
29063--29102	20	2.0	20	95	0	71	15	12	25	47	1.80
29109--29184	20	3.9	20	72	14	61	28	14	26	30	1.95
29639--29706	34	2.1	33	86	13	97	48	2	2	45	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29842--29899	29	2.0	29	89	0	89	13	36	27	22	1.92
29939--29989	10	4.7	10	74	25	50	23	39	27	9	1.86
29942--29969	14	2.0	14	100	0	56	21	42	28	7	1.79
29937--30047	33	3.3	33	84	1	132	25	30	34	9	1.88
29974--30060	33	2.6	33	88	0	120	28	26	35	9	1.87
33070--33094	12	2.1	12	100	0	50	40	0	0	60	0.97
36561--36666	15	7.5	15	65	19	57	39	1	5	52	1.36
36544--36674	42	3.1	42	97	0	244	40	2	6	51	1.39
38845--38891	16	3.0	16	79	14	53	40	10	19	29	1.85
49192--49273	21	4.0	21	70	12	71	21	25	17	35	1.95
49263--49314	21	2.5	21	87	3	70	38	17	23	21	1.93
49248--49540	41	7.2	41	77	6	195	33	20	19	27	1.96
49324--49396	21	3.5	21	79	3	76	23	21	17	36	1.94
49386--49537	20	7.6	20	84	2	189	38	20	20	21	1.94
49386--49519	40	3.3	40	92	2	214	39	19	20	20	1.93
49263--49519	61	4.2	62	73	6	204	35	19	19	25	1.96
49825--49850	9	2.9	9	100	0	52	0	0	7	92	0.39
50103--50190	33	2.6	33	92	1	149	12	25	21	40	1.88
50158--50215	20	2.9	20	80	10	64	13	24	18	43	1.87
53779--53812	14	2.4	14	95	0	59	32	0	23	44	1.54
53919--53965	19	2.5	19	96	0	85	44	21	21	12	1.85
53990--54140	19	8.7	19	63	21	71	14	21	20	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53994--54120	33	3.9	32	86	8	184	14	22	19	44	1.86
53987--54119	66	2.0	66	95	0	239	15	21	19	42	1.88
55930--55990	21	2.9	21	71	9	61	22	13	40	22	1.89
55902--55990	42	2.1	42	85	0	124	22	14	39	23	1.91
56353--56403	19	2.6	19	87	3	66	35	29	15	19	1.93
56358--56443	20	4.4	20	82	2	95	38	25	20	15	1.92
56358--56450	39	2.4	39	76	3	98	40	24	19	15	1.90
56469--56532	19	3.7	18	72	21	64	12	18	21	46	1.82
56518--56560	20	2.2	20	87	4	61	18	23	20	37	1.94
57106--57153	18	2.7	18	93	0	87	14	12	45	27	1.81
58425--58467	20	2.2	20	95	0	77	53	18	18	9	1.70
58955--59092	41	3.4	41	78	2	161	23	15	25	35	1.94
58975--59088	20	5.7	20	78	6	104	23	16	27	32	1.96
59022--59189	41	4.1	41	83	6	196	22	21	20	35	1.96
59083--59212	21	6.3	21	84	6	167	23	21	16	38	1.93
59058--59212	83	1.9	82	89	1	238	21	22	19	36	1.95
59083--59212	41	3.1	41	81	9	165	23	21	16	38	1.93
59094--59227	62	2.2	62	82	2	171	26	20	17	35	1.94
70136--70176	17	2.3	19	84	12	52	31	0	9	58	1.31
71022--71085	28	2.2	29	83	8	78	54	4	14	26	1.59
73534--73573	21	1.9	21	84	0	53	50	17	0	32	1.47

Tables:   1

The End!