genome.fa.s564.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000564.1 Hibiscus syriacus cultivar Beakdansim tig00001103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98587

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1483--1520	20	1.9	20	94	0	67	34	18	21	26	1.96
12949--13029	36	2.3	35	87	6	110	40	23	1	34	1.63
12949--13044	36	2.7	36	80	7	90	39	26	2	32	1.68
13529--13797	148	1.8	148	95	0	484	46	10	7	35	1.66
16186--16262	35	2.2	35	90	0	118	32	0	24	42	1.55
16547--16597	25	2.0	25	81	7	59	45	0	17	37	1.49
17657--17682	5	5.2	5	100	0	52	80	0	19	0	0.71
18303--18346	22	2.0	22	90	0	70	27	22	18	31	1.97
27908--28085	29	6.2	29	86	3	234	33	3	16	46	1.66
32307--32350	22	2.0	22	90	0	70	25	25	18	31	1.97
36604--36653	18	2.8	18	100	0	100	22	22	30	26	1.99
36562--36716	81	1.9	81	95	0	283	25	20	24	29	1.99
41191--41250	20	2.8	20	90	7	84	31	25	25	18	1.97
42634--42830	103	1.9	103	94	0	349	28	12	22	36	1.90
42851--42918	23	3.0	23	88	0	91	20	26	26	26	1.99
45652--45694	17	2.6	16	78	7	50	34	0	25	39	1.56
46643--46688	22	2.0	22	83	4	56	32	30	26	10	1.90
50125--50167	17	2.6	16	78	7	50	34	0	25	39	1.56
51055--51096	20	2.1	20	100	0	84	33	23	23	19	1.97
51146--51189	22	2.0	22	86	0	61	29	29	27	13	1.94
52459--52676	103	2.1	103	94	0	382	26	13	23	36	1.92
52701--52760	23	2.6	23	91	0	93	20	26	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55494--55536	17	2.6	16	78	7	50	34	0	25	39	1.56
56420--56479	20	2.9	21	90	7	95	30	25	26	18	1.98
56513--56557	22	2.0	22	91	4	72	28	28	26	15	1.96
57836--58044	103	2.0	103	94	1	366	26	14	22	36	1.93
58061--58128	23	3.0	22	80	4	73	22	26	25	26	2.00
60860--60902	17	2.6	16	78	7	50	34	0	25	39	1.56
61686--61745	20	2.9	21	90	7	95	30	25	26	18	1.98
61779--61823	22	2.0	22	86	4	63	28	28	26	15	1.96
63117--63326	103	2.0	103	93	0	357	26	13	23	36	1.92
63346--63413	23	3.0	23	88	0	91	20	26	26	26	1.99
69810--70392	312	1.9	305	90	3	934	23	19	21	35	1.96
70904--70963	29	2.1	29	90	6	95	53	18	16	11	1.72
72112--72183	37	1.9	37	94	0	126	25	18	23	33	1.97
73713--73760	23	2.1	23	84	0	60	35	10	18	35	1.85
73964--74030	30	2.2	29	82	10	73	43	0	4	52	1.21
74186--74248	23	2.7	23	92	0	99	38	20	4	36	1.74
73827--74880	430	2.5	429	97	0	2002	38	11	7	41	1.71
74616--74678	23	2.7	23	92	0	99	38	20	4	36	1.74
75100--75185	39	2.2	39	93	0	145	18	13	18	48	1.80
75444--75480	18	2.1	18	89	0	56	51	10	5	32	1.60
75913--75975	23	2.7	23	92	0	99	38	20	4	36	1.74
77815--77857	20	2.3	18	85	14	61	20	16	11	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77820--77866	20	2.4	19	82	10	67	19	17	10	53	1.72
78001--78047	20	2.3	20	96	0	85	17	17	8	57	1.63
78001--78056	20	2.8	20	89	5	69	17	16	10	55	1.69
77787--78259	181	2.6	182	89	0	696	26	16	13	42	1.86
82249--82344	26	3.7	26	71	2	68	36	19	20	22	1.95
83358--83395	3	12.7	3	100	0	76	68	0	0	31	0.90
87497--87583	40	2.1	41	89	6	133	48	9	18	24	1.77
89172--89221	19	2.6	19	93	0	91	32	18	28	22	1.97
90345--90467	2	61.5	2	100	0	246	50	0	0	49	1.00
90893--90960	23	3.0	23	75	0	73	20	25	23	30	1.98

Tables:   1

The End!