Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005641.1 Hibiscus syriacus cultivar Beakdansim tig00013148_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90049
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Found at i:967 original size:18 final size:19
Alignment explanation
Indices: 944--982 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
934 TATTTCATGA
944 CTAAAACTAG-AATACTAC
1 CTAAAACTAGAAATACTAC
962 CTAAAACTAGAAATACTAC
1 CTAAAACTAGAAATACTAC
981 CT
1 CT
983 TGACCCACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.49, C:0.23, G:0.05, T:0.23
Consensus pattern (19 bp):
CTAAAACTAGAAATACTAC
Found at i:6016 original size:19 final size:19
Alignment explanation
Indices: 5969--6018 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
5959 AGAATTTTGA
* * *
5969 ATTTTAAGAATTTTAGTTT
1 ATTTTAAAAATTTGAGGTT
*
5988 TTTATTAAAAATTTGAGGTT
1 ATT-TTAAAAATTTGAGGTT
6008 ATTTTAAAAAT
1 ATTTTAAAAAT
6019 ATTAATTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (19 bp):
ATTTTAAAAATTTGAGGTT
Found at i:8843 original size:2 final size:2
Alignment explanation
Indices: 8836--8882 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
8826 ATTTAAAATA
8836 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8878 AT AT A
1 AT AT A
8883 ATTTAAACAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11981 original size:42 final size:42
Alignment explanation
Indices: 11843--11975 Score: 207
Period size: 42 Copynumber: 3.2 Consensus size: 42
11833 TTTCACCATC
11843 TAAAAGGGTTGAAAGGTTAAAAACACCAGTGAATAGCCCAAG
1 TAAAAGGGTTGAAAGGTTAAAAACACCAGTGAATAGCCCAAG
*
11885 TAAAAGGGTTGAAAGGTTAAAAACACCTGTGAATAGCCCAAG
1 TAAAAGGGTTGAAAGGTTAAAAACACCAGTGAATAGCCCAAG
* *
11927 TAAAAGTGATGAAAGGTTAAAAACACCAGT-AGAT-GCCCCAAG
1 TAAAAGGGTTGAAAGGTTAAAAACACCAGTGA-ATAG-CCCAAG
11969 TAAAAGG
1 TAAAAGG
11976 TATGAAGTGT
Statistics
Matches: 84, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
41 2 0.02
42 82 0.98
ACGTcount: A:0.45, C:0.14, G:0.23, T:0.17
Consensus pattern (42 bp):
TAAAAGGGTTGAAAGGTTAAAAACACCAGTGAATAGCCCAAG
Found at i:11992 original size:42 final size:42
Alignment explanation
Indices: 11843--11998 Score: 189
Period size: 42 Copynumber: 3.7 Consensus size: 42
11833 TTTCACCATC
11843 TAAAAGGGT-TGAAAGGTTAAAAACACCAGTGAATAGCCCAAG
1 TAAAA-GGTATGAAAGGTTAAAAACACCAGTGAATAGCCCAAG
*
11885 TAAAAGGGT-TGAAAGGTTAAAAACACCTGTGAATAGCCCAAG
1 TAAAA-GGTATGAAAGGTTAAAAACACCAGTGAATAGCCCAAG
11927 TAAAA-GTGATGAAAGGTTAAAAACACCAGT-AGAT-GCCCCAAG
1 TAAAAGGT-ATGAAAGGTTAAAAACACCAGTGA-ATAG-CCCAAG
* *
11969 TAAAAGGTATG-AAGTGTTTAAAACGCCAGT
1 TAAAAGGTATGAAAG-GTTAAAAACACCAGT
11999 CGATACCTCA
Statistics
Matches: 104, Mismatches: 4, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
40 2 0.02
41 5 0.05
42 95 0.91
43 2 0.02
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (42 bp):
TAAAAGGTATGAAAGGTTAAAAACACCAGTGAATAGCCCAAG
Found at i:12453 original size:273 final size:273
Alignment explanation
Indices: 11934--12509 Score: 728
Period size: 273 Copynumber: 2.1 Consensus size: 273
11924 AAGTAAAAGT
* * * *
11934 GATGAAAGGTTAAAAACACCAGTAGATGCCCCAAGTAAAAGGTATGAAGTGTTTAAAACGCCAGT
1 GATGAAAGGTTAAAAACACCAGTAGATACCACAAGTAAAAGGTATGAAATGTTTAAAACACCAGT
* * ** * * * *
11999 CGATACCTCAAGGAAGAGGTTTTTGGAGTTTTCCGGGCCTGATGATGCGTCAAAAGTTGAAAACT
66 AGATACCCCAAGGAAGAGACTTCTGGAGTTTTCCGGGCCTGATGATACATCAAAACTTGAAAACT
* ** *
12064 CAGTTGTATGGTCTGGTTACCGTGAGAATTCATGGAAGGAGCCTATTGGCATTGGAGGAGGAAAA
131 CAGCTGTACAGTCTGGTTACCGTGAGAATTCATGGAAGGAGCCTATTGGCATTGGAGGAGAAAAA
* * * *
12129 CTATTAGATGCCGGTGTTCATCGTTCTCATTCGTCACTATCACAGCGTTCAGTATTTCCAAGTTG
196 CTATTAGATGCCAGTGTTCATCGCTCTCATTCCTCACTATCACACCGTTCAGTATTTCCAAGTTG
**
12194 GGCATCTCCTCTG
261 GGCATCTCCTCCA
* * * *
12207 GATGTAAGGTTAAAAACACCAGTAGATACCACAAGTCAAAGTTATGAAATG-TTACAAACACCGG
1 GATGAAAGGTTAAAAACACCAGTAGATACCACAAGTAAAAGGTATGAAATGTTTA-AAACACCAG
* * *
12271 TAGATACCCCACGTG-GGAGACTTCTGGAGTTTT-CGGGACCTTATGATACATCAAAACTTGAAA
65 TAGATACCCCAAG-GAAGAGACTTCTGGAGTTTTCCGGG-CCTGATGATACATCAAAACTTGAAA
* * *
12334 ATTCAGCTGTACAGTCTGGTTACCGTGAGAATTCTTGGAAGGAGCC-AGTTGGCATTGTAGGAGA
128 ACTCAGCTGTACAGTCTGGTTACCGTGAGAATTCATGGAAGGAGCCTA-TTGGCATTGGAGGAGA
* * * * ** *
12398 AAAACTATTAGATTCTAGTGTTCATCGCTGTCATTCCTCGCTATTGCACCGTTCAGTATTTCCGA
192 AAAACTATTAGATGCCAGTGTTCATCGCTCTCATTCCTCACTATCACACCGTTCAGTATTTCCAA
12463 GTTGGGCATCTCCTCCA
257 GTTGGGCATCTCCTCCA
*
12480 GATGGAAGGTTAAAAACACCAGTAGATACC
1 GATGAAAGGTTAAAAACACCAGTAGATACC
12510 TTGAGAGGGA
Statistics
Matches: 259, Mismatches: 40, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
272 8 0.03
273 250 0.97
274 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (273 bp):
GATGAAAGGTTAAAAACACCAGTAGATACCACAAGTAAAAGGTATGAAATGTTTAAAACACCAGT
AGATACCCCAAGGAAGAGACTTCTGGAGTTTTCCGGGCCTGATGATACATCAAAACTTGAAAACT
CAGCTGTACAGTCTGGTTACCGTGAGAATTCATGGAAGGAGCCTATTGGCATTGGAGGAGAAAAA
CTATTAGATGCCAGTGTTCATCGCTCTCATTCCTCACTATCACACCGTTCAGTATTTCCAAGTTG
GGCATCTCCTCCA
Found at i:20310 original size:55 final size:55
Alignment explanation
Indices: 20251--21031 Score: 692
Period size: 51 Copynumber: 14.8 Consensus size: 55
20241 GGGTCTGCTT
* * * * ** *
20251 CCTATTCTTTCAGGGAGTATAAGACTCAAACAATATTCGGCAAACGTGTCTGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
** * * * **
20306 CCTATTCAGTCAGGGAGTATAAGACTTGAACAATCTTCGACAAACGTGTATGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
** * * *
20361 CCTATTCAGTCAGGGAGTATAAGACTTGAACAATCTTCAATAAAACAG-GTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAA-CAAAC-GTGTCCGCTC
* * * *
20417 TCTATTCCTTCAGAGAGTAT-AGAACTCGGAA-AATCTTCAATAAACGAGTACGCTC
1 CCTATTCCTTCAGAGAGTATAAG-ACTC-GAACAATCTTCAACAAACGTGTCCGCTC
** * *
20472 CCTATTTGTTCAGGGAGTAT-AGAACTCGAACAATCTTCATA-AAACGTGTTCGCTC
1 CCTATTCCTTCAGAGAGTATAAG-ACTCGAACAATCTTCA-ACAAACGTGTCCGCTC
* * * *
20527 TCTAATCCTTCAGAGAGTAT-AGAACTCGAACAATCTTCAACGAACTTGTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAG-ACTCGAACAATCTTCAACAAACGTGTCCGCTC
* *
20582 CCTATTCCTTCAGAGAGTATAAGACT----CAATCTTCAACGAACTTGTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
* * * *
20633 CCTATTCTTTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
* *
20684 CCTATTCCTTCAGAGAGTATAAGACT----CAATCTTCAACGAACTTGTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
* * *
20735 CCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
* * *
20786 CCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
* ** *
20837 CCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCAATGAACTTGTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
* * *
20888 CCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
* * * *
20939 CCTATTCTTTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCGCTC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
*
20990 CCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCAACAAACG
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACG
21032 AGTTTGCTTC
Statistics
Matches: 672, Mismatches: 45, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
51 413 0.61
54 5 0.01
55 209 0.31
56 41 0.06
57 4 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (55 bp):
CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCCGCTC
Found at i:20628 original size:51 final size:51
Alignment explanation
Indices: 20409--21026 Score: 914
Period size: 51 Copynumber: 11.9 Consensus size: 51
20399 AATAAAACAG
* * ** **
20409 GTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGGAAAATCTTCAATAAACGA
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTC----AATCTTCAACGAACTT
* ** * * * *
20464 GTACGCTCCCTATTTGTTCAGGGAGTATAGAACTCGAACAATCTTCATA-AAACGT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCA-ACGAACTT
* * * *
20519 GTTCGCTCTCTAATCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACGAACTT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCAACGAACTT
*
20574 GTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTCAATCTTCAACGAACTT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
*
20625 GTCCGCTCCCTATTCTTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
*
20676 GTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTCAATCTTCAACGAACTT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
20727 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
20778 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
*
20829 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAATGAACTT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
20880 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
*
20931 GTCCGCTCCCTATTCTTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
20982 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAAC
1 GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAAC
21027 AAACGAGTTT
Statistics
Matches: 529, Mismatches: 28, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
51 410 0.78
54 1 0.00
55 116 0.22
56 1 0.00
59 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (51 bp):
GTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTT
Found at i:22411 original size:7 final size:7
Alignment explanation
Indices: 22399--22474 Score: 61
Period size: 7 Copynumber: 10.7 Consensus size: 7
22389 CTATTTCTTT
22399 TTTTTCA
1 TTTTTCA
22406 TTTTTCA
1 TTTTTCA
22413 TTTTTTCA
1 -TTTTTCA
22421 TTTTTCA
1 TTTTTCA
*
22428 TTTTTTTTA
1 --TTTTTCA
*
22437 TTATTCA
1 TTTTTCA
22444 TTTTTTC-
1 -TTTTTCA
22451 TTTTTC-
1 TTTTTCA
22457 TTTTTC-
1 TTTTTCA
22463 TCTTTT-A
1 T-TTTTCA
22470 TTTTT
1 TTTTT
22475 TCTTCAAGCG
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
6 17 0.29
7 24 0.41
8 12 0.20
9 6 0.10
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTCA
Found at i:22444 original size:31 final size:30
Alignment explanation
Indices: 22386--22461 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 30
22376 CCTCCTTTTA
* *
22386 TTTCTATTTCTTTTTTTTCATTTTTCATTT
1 TTTCTTTTTCTTTTTTTTCATTATTCATTT
22416 TTTCATTTTTCATTTTTTTT-ATTATTCATTT
1 TTTC-TTTTTC-TTTTTTTTCATTATTCATTT
22447 TTTCTTTTTCTTTTT
1 TTTCTTTTTCTTTTT
22462 CTCTTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
29 5 0.12
30 10 0.24
31 19 0.45
32 8 0.19
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.78
Consensus pattern (30 bp):
TTTCTTTTTCTTTTTTTTCATTATTCATTT
Found at i:22475 original size:14 final size:14
Alignment explanation
Indices: 22398--22478 Score: 87
Period size: 15 Copynumber: 5.6 Consensus size: 14
22388 TCTATTTCTT
22398 TTTTTTCATTTTTCA
1 TTTTTTC-TTTTTCA
22413 TTTTTTCATTTTTCA
1 TTTTTTC-TTTTTCA
*
22428 TTTTTTTTATTATTCA
1 TTTTTTCT-TT-TTCA
22444 TTTTTTCTTTTTC-
1 TTTTTTCTTTTTCA
22457 -TTTTTCTCTTTT-A
1 TTTTTTCT-TTTTCA
22470 TTTTTTCTT
1 TTTTTTCTT
22479 CAAGCGAAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
12 7 0.12
13 5 0.08
14 11 0.19
15 25 0.42
16 11 0.19
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTTCTTTTTCA
Found at i:32191 original size:45 final size:47
Alignment explanation
Indices: 32123--32211 Score: 155
Period size: 45 Copynumber: 1.9 Consensus size: 47
32113 TGCTTTGTTA
32123 TTCACAAAAATAAATCCTAACCGCATGATATCTAATTCGCATGCTTG
1 TTCACAAAAATAAATCCTAACCGCATGATATCTAATTCGCATGCTTG
*
32170 TTCA-AAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGC
1 TTCACAAAAATAAATCCTAACCGCATGATATCTAATTCGCATGC
32212 ATTTATTCGA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
45 28 0.68
46 9 0.22
47 4 0.10
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (47 bp):
TTCACAAAAATAAATCCTAACCGCATGATATCTAATTCGCATGCTTG
Found at i:41066 original size:2 final size:2
Alignment explanation
Indices: 41059--41093 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
41049 TATTAGGTAT
41059 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
41094 TAAAAATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:41638 original size:186 final size:186
Alignment explanation
Indices: 41314--41675 Score: 607
Period size: 186 Copynumber: 1.9 Consensus size: 186
41304 ATAAAAATTA
* *
41314 AAAAACAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAATTTTATATAATTTTTT
1 AAAAACAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAAATTTATATAAATTTTT
*
41379 TAATTAATTAATATTGATTTAGGTTTAAAATTTATTAGATCTTAAATTATTAATTGGGTTTTAAA
66 TAATTAATTAATATTGATTTAGGTTTAAAAGTTATTAGATCTTAAATTATTAATTGGGTTTTAAA
** *
41444 TAGTTTGGGCTGAGCCCATATGTTATATGTAATATATTTAATATTTTTTAATTCAG
131 TAGTTTGGGCTGAGCCCATATGTTATATAAAATATATTTAAAATTTTTTAATTCAG
*
41500 AAAAATAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAAATTTATATAAATTTTT
1 AAAAACAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAAATTTATATAAATTTTT
* * *
41565 TAATTAATTAATATTGATTTATGTTTAGAAGTTATTGGATCTTAAATTATTAATTGGGTTTTAAA
66 TAATTAATTAATATTGATTTAGGTTTAAAAGTTATTAGATCTTAAATTATTAATTGGGTTTTAAA
* * *
41630 TGGTTTGGGTTGAGCTCATATGTTATATAAAATATATTTAAAATTT
131 TAGTTTGGGCTGAGCCCATATGTTATATAAAATATATTTAAAATTT
41676 AAAATTTTAT
Statistics
Matches: 163, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
186 163 1.00
ACGTcount: A:0.41, C:0.03, G:0.10, T:0.46
Consensus pattern (186 bp):
AAAAACAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAAATTTATATAAATTTTT
TAATTAATTAATATTGATTTAGGTTTAAAAGTTATTAGATCTTAAATTATTAATTGGGTTTTAAA
TAGTTTGGGCTGAGCCCATATGTTATATAAAATATATTTAAAATTTTTTAATTCAG
Found at i:43451 original size:21 final size:22
Alignment explanation
Indices: 43410--43453 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
43400 ATATTTTAAA
*
43410 TATTTTTTATTAAAACTTTATT
1 TATTTTTTATTAAAACGTTATT
*
43432 TATTTTTTCTTAAAA-GTTATT
1 TATTTTTTATTAAAACGTTATT
43453 T
1 T
43454 TGTGTTCAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (22 bp):
TATTTTTTATTAAAACGTTATT
Found at i:44768 original size:19 final size:19
Alignment explanation
Indices: 44746--44787 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
44736 AATTGAAATA
44746 AATGTAATAAAAATAATCG
1 AATGTAATAAAAATAATCG
* *
44765 AATGTAATGAAAATGATCG
1 AATGTAATAAAAATAATCG
44784 AATG
1 AATG
44788 CAACTCATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.17, T:0.26
Consensus pattern (19 bp):
AATGTAATAAAAATAATCG
Found at i:49562 original size:3 final size:3
Alignment explanation
Indices: 49554--49589 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
49544 CTACCTTTAA
49554 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
49590 TAATCTCTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:57613 original size:335 final size:341
Alignment explanation
Indices: 56905--57731 Score: 846
Period size: 338 Copynumber: 2.4 Consensus size: 341
56895 AGAGGAAATT
* * *
56905 GCAGATATACTTACTAGGATTGACTTGCTCCC--GATTTTCTTGGTATCCTGTGGCAGTGAGTTG
1 GCAGATATACTTACTAGGATTGACTT-C-CCCTTGATTTTCTTGATATCCTATGGTAGTGAGTTG
* * *
56968 GGCAGTAGGACTAGAATTTCCAGCAGAACAATTGCCAAAATCACCATCTTCAATTTTTGGTACCA
64 GGCAGCAGGACTAGAATTTCCAGCAGAAC-A-TGCCAAAATCATCAGCTTCAA-TTTTGGTACCA
* * *
57033 AGCGACC-TT--T-----TTGACTGGCTTTAGCATAATCAGCTGAATATATCGGAAAAAATAATA
126 AGCAACCTTTGATGCAACTTGACTGCCTTTAGCAGAATCAGCTGAATATATCGGAAAAAATAATA
* * ** * *
57090 TCGTAATCAATAAGAATTTTGACATGTTCGTATATTTGAATCATGCTCAAGCTTCTTTTTCTTGT
191 TCGTAAGCAATAAGAATTTTGACATATTAATATATTTGAATCATGCCCAAGCTTATTTTTCTTGT
**
57155 TGTGTTGAGTTTTGCACCTTATTGTTAGTTATTTTTTCTAAATATTCTCTGTTGTATCTAGTATT
256 TGCATTGAGTTTTGCACCTTATTGTTAGTTATTTTTTCTAAATATTCTCTGTTGTATCTAGTATT
* *
57220 GTCAGGTTTAAAGTGAGGTCATT
321 GTCAGCTTTAAAGTGA-G-CATA
* * * * * *
57243 GCAGATGTACTTACTAGGACTGATTTCCTCTTGATTTTCTTGATATCCTATGGTGGTGACTTGGG
1 GCAGATATACTTACTAGGATTGACTTCCCCTTGATTTTCTTGATATCCTATGGTAGTGAGTTGGG
** *
57308 CAGCAGGGGTAGAATTTCCAGCAGAAC-CGCCAAAATCATCAGCTTCAATTTTCGGTACCAAGCA
66 CAGCAGGACTAGAATTTCCAGCAGAACATGCCAAAATCATCAGCTTCAATTTT-GGTACCAAGCA
** * *
57372 ACCTTTGGATGCAACTTGACTGCCTTTAGCAGCGTCAGCT-TA-ATATC-G-ACAAAT-ATA-C-
130 ACCTTT-GATGCAACTTGACTGCCTTTAGCAGAATCAGCTGAATATATCGGAAAAAATAATATCG
* **
57430 TAAGCAATACAG-ATTTTGACATATTAATGTATTTGAATCATGCCCGTGCTTATTTTTCTTGTCT
194 TAAGCAATA-AGAATTTTGACATATTAATATATTTGAATCATGCCCAAGCTTATTTTTCTTGT-T
* * * * * *
57494 -CATTGTGTTTTGTATCC-TATTGTTAGTTTTATTTTTC-ATATTTTGTTCGTGTTGTATCTAGT
257 GCATTGAGTTTTGCA-CCTTATTGTTAGTTAT-TTTTTCTAAATATT-CTC-TGTTGTATCTAGT
57556 ATTGTCAGCTTTAAAG-GA-CATA
318 ATTGTCAGCTTTAAAGTGAGCATA
* *
57578 GCAGATATACTTACTAGGATTGACTTCCCCTTGATTTTCTTGATA-CACTATTGTAGTAAGTTGG
1 GCAGATATACTTACTAGGATTGACTTCCCCTTGATTTTCTTGATATC-CTATGGTAGTGAGTTGG
* *
57642 GCAGCAGGACTATG-CTTTTCAGCAGAACAATTGCCAAAATCACCATCAGCTTCAA--TTGGTAC
65 GCAGCAGGACTA-GAATTTCCAGCAGAAC-A-TGCCAAAAT---CATCAGCTTCAATTTTGGTAC
57704 CAAGCAACCTTTAGATGCAACTTGACTG
124 CAAGCAACCTTT-GATGCAACTTGACTG
57732 GCTTCAGAAT
Statistics
Matches: 408, Mismatches: 55, Indels: 52
0.79 0.11 0.10
Matches are distributed among these distances:
334 5 0.01
335 110 0.27
336 5 0.01
337 78 0.19
338 131 0.32
339 34 0.08
340 5 0.01
341 13 0.03
342 5 0.01
343 1 0.00
344 21 0.05
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (341 bp):
GCAGATATACTTACTAGGATTGACTTCCCCTTGATTTTCTTGATATCCTATGGTAGTGAGTTGGG
CAGCAGGACTAGAATTTCCAGCAGAACATGCCAAAATCATCAGCTTCAATTTTGGTACCAAGCAA
CCTTTGATGCAACTTGACTGCCTTTAGCAGAATCAGCTGAATATATCGGAAAAAATAATATCGTA
AGCAATAAGAATTTTGACATATTAATATATTTGAATCATGCCCAAGCTTATTTTTCTTGTTGCAT
TGAGTTTTGCACCTTATTGTTAGTTATTTTTTCTAAATATTCTCTGTTGTATCTAGTATTGTCAG
CTTTAAAGTGAGCATA
Found at i:74282 original size:20 final size:20
Alignment explanation
Indices: 74235--74818 Score: 451
Period size: 20 Copynumber: 28.2 Consensus size: 20
74225 AATGACCAAC
* *
74235 AAAATCGCAACGCGATAT-C
1 AAAATCGCAACGCGATTTAG
*
74254 AAAACCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTTAG
* * **
74274 AAAAGCGCAACGTTGA-AAAG
1 AAAATCGCAACG-CGATTTAG
* **
74294 AAGATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TTAG
* * *
74315 AAGAATCGCAATGCGATTCAT
1 AA-AATCGCAACGCGATTTAG
**
74336 AAAATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TTAG
*
74357 AAGAATCGCAACGCGATTCAG
1 AA-AATCGCAACGCGATTTAG
**
74378 AAAATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TTAG
*
74399 AAGAATCGCAACGCGATTAAG
1 AA-AATCGCAACGCGATTTAG
*
74420 AAAATCGCAACGCGATTCCA-
1 AAAATCGCAACGCGATT-TAG
* *
74440 AGAATCGCAACGCGATTCAG
1 AAAATCGCAACGCGATTTAG
*
74460 AAAATCGCAACGCGATTCCA-
1 AAAATCGCAACGCGATT-TAG
* **
74480 AGAATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TTAG
*
74501 AAGAATCGCAACGCGATTAAG
1 AA-AATCGCAACGCGATTTAG
*
74522 AAAATCGCAACGCGATTAAG
1 AAAATCGCAACGCGATTTAG
**
74542 AAAATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TTAG
*
74563 AAGAATCGCAACGCGATTAAG
1 AA-AATCGCAACGCGATTTAG
*
74584 AAAATCGCAACGCGATTCCA-
1 AAAATCGCAACGCGATT-TAG
* *
74604 AGAATCGCAACGCGATTCCA-
1 AAAATCGCAACGCGATT-TAG
* **
74624 AGAATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TTAG
**
74645 AAGAATCGCAACGCGATCTTCC
1 AA-AATCGCAACGCGAT-TTAG
*
74667 AAGAATCGCAACGCGATTAAG
1 AA-AATCGCAACGCGATTTAG
**
74688 AAAATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TTAG
*
74709 AAGAATCGCAACGCGATTAAG
1 AA-AATCGCAACGCGATTTAG
**
74730 AAAATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TTAG
**
74751 AAGAATCGCAACGCGATCTTCC
1 AA-AATCGCAACGCGAT-TTAG
*
74773 AAGAATCGCAACGCGATTAAG
1 AA-AATCGCAACGCGATTTAG
* *
74794 AAACTCGCAACGCGATTCAG
1 AAAATCGCAACGCGATTTAG
74814 AAAAT
1 AAAAT
74819 GAGTAAATTC
Statistics
Matches: 469, Mismatches: 71, Indels: 49
0.80 0.12 0.08
Matches are distributed among these distances:
19 20 0.04
20 244 0.52
21 51 0.11
22 154 0.33
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.16
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTAG
Found at i:74344 original size:42 final size:41
Alignment explanation
Indices: 74237--74810 Score: 593
Period size: 42 Copynumber: 13.9 Consensus size: 41
74227 TGACCAACAA
* **
74237 AATCGCAACGCGATATC--AAAACCGCAACGCGATTTAGAA-
1 AATCGCAACGCGAT-TCAGAAAATCGCAACGCGATTTCCAAG
* * ** *
74276 AAGCGCAACGTTGA-AAAGAAGATCGCAACGCGATCTTCCAAG
1 AATCGCAACG-CGATTCAGAAAATCGCAACGCGAT-TTCCAAG
* *
74318 AATCGCAATGCGATTCATAAAATCGCAACGCGATCTTCCAAG
1 AATCGCAACGCGATTCAGAAAATCGCAACGCGAT-TTCCAAG
74360 AATCGCAACGCGATTCAGAAAATCGCAACGCGATCTTCCAAG
1 AATCGCAACGCGATTCAGAAAATCGCAACGCGAT-TTCCAAG
*
74402 AATCGCAACGCGATTAAGAAAATCGCAACGCGA-TTCCAAG
1 AATCGCAACGCGATTCAGAAAATCGCAACGCGATTTCCAAG
74442 AATCGCAACGCGATTCAGAAAATCGCAACGCGA-TTCCAAG
1 AATCGCAACGCGATTCAGAAAATCGCAACGCGATTTCCAAG
* ***
74482 AATCGCAACGCGATCTTCCA-AGAATCGCAACGCGATTAAGAA-
1 AATCGCAACGCGA--TT-CAGAAAATCGCAACGCGATTTCCAAG
*
74524 AATCGCAACGCGATTAAGAAAATCGCAACGCGATCTTCCAAG
1 AATCGCAACGCGATTCAGAAAATCGCAACGCGAT-TTCCAAG
*
74566 AATCGCAACGCGATTAAGAAAATCGCAACGCGA-TTCCAAG
1 AATCGCAACGCGATTCAGAAAATCGCAACGCGATTTCCAAG
*
74606 AATCGCAACGCGATTCCA-AGAATCGCAACGCGATCTTCCAAG
1 AATCGCAACGCGATT-CAGAAAATCGCAACGCGAT-TTCCAAG
* ***
74648 AATCGCAACGCGATCTTCCA-AGAATCGCAACGCGATTAAGAA-
1 AATCGCAACGCGA--TT-CAGAAAATCGCAACGCGATTTCCAAG
* ***
74690 AATCGCAACGCGATCTTCCA-AGAATCGCAACGCGATTAAGAA-
1 AATCGCAACGCGA--TT-CAGAAAATCGCAACGCGATTTCCAAG
*
74732 AATCGCAACGCGATCTTCCA-AGAATCGCAACGCGATCTTCCAAG
1 AATCGCAACGCGA--TT-CAGAAAATCGCAACGCGAT-TTCCAAG
* *
74776 AATCGCAACGCGATTAAGAAACTCGCAACGCGATT
1 AATCGCAACGCGATTCAGAAAATCGCAACGCGATT
74811 CAGAAAATGA
Statistics
Matches: 475, Mismatches: 39, Indels: 40
0.86 0.07 0.07
Matches are distributed among these distances:
39 10 0.02
40 128 0.27
41 12 0.03
42 280 0.59
43 11 0.02
44 34 0.07
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.17
Consensus pattern (41 bp):
AATCGCAACGCGATTCAGAAAATCGCAACGCGATTTCCAAG
Found at i:74345 original size:62 final size:60
Alignment explanation
Indices: 74238--74810 Score: 486
Period size: 62 Copynumber: 9.2 Consensus size: 60
74228 GACCAACAAA
* * * * * *
74238 ATCGCAACGCGATAT-CAA-AACCGCAACGCGATTTAGAAAAGCGCAACGTTGAAAAGAAG
1 ATCGCAACGCGATTTCCAAGAATCGCAACGCGATTCAGAAAATCGCAACG-CGATAAGAAG
* * ***
74297 ATCGCAACGCGATCTTCCAAGAATCGCAATGCGATTCATAAAATCGCAACGCGATCTTCCAAG
1 ATCGCAACGCGAT-TTCCAAGAATCGCAACGCGATTCAGAAAATCGCAACGCGA--TAAGAAG
* *
74360 AATCGCAACGCGA-TT-CAGAAAATCGCAACGCGATCTTCCA-AGAATCGCAACGCGATTAAGAA
1 -ATCGCAACGCGATTTCCA-AGAATCGCAACGCGA--TT-CAGAAAATCGCAACGCGA-TAAGAA
*
74422 A
60 G
***
74423 ATCGCAACGCGA-TTCCAAGAATCGCAACGCGATTCAGAAAATCGCAACGCGATTCCAAG
1 ATCGCAACGCGATTTCCAAGAATCGCAACGCGATTCAGAAAATCGCAACGCGATAAGAAG
* *
74482 AATCGCAACGCGATCTTCCAAGAATCGCAACGCGATTAAGAAAATCGCAACGCGATTAAGAAA
1 -ATCGCAACGCGAT-TTCCAAGAATCGCAACGCGATTCAGAAAATCGCAACGCGA-TAAGAAG
* ***
74545 ATCGCAACGCGATCTTCCAAGAATCGCAACGCGATTAAGAAAATCGCAACGCGATTCCAAG
1 ATCGCAACGCGAT-TTCCAAGAATCGCAACGCGATTCAGAAAATCGCAACGCGATAAGAAG
* ***
74606 AATCGCAACGCGA-TTCCAAGAATCGCAACGCGATCTTCCA-AGAATCGCAACGCGATCTTCCAA
1 -ATCGCAACGCGATTTCCAAGAATCGCAACGCGA--TT-CAGAAAATCGCAACGCGA--TAAGAA
74669 G
60 G
*** * *
74670 AATCGCAACGCGATTAAGAA-AATCGCAACGCGATCTTCCA-AGAATCGCAACGCGATTAAGAAA
1 -ATCGCAACGCGATTTCCAAGAATCGCAACGCGA--TT-CAGAAAATCGCAACGCGA-TAAGAAG
*
74733 ATCGCAACGCGATCTTCCAAGAATCGCAACGCGATCTTCCA-AGAATCGCAACGCGATTAAGAA-
1 ATCGCAACGCGAT-TTCCAAGAATCGCAACGCGA--TT-CAGAAAATCGCAACGCGA-TAAGAAG
74796 ACTCGCAACGCGATT
1 A-TCGCAACGCGATT
74811 CAGAAAATGA
Statistics
Matches: 441, Mismatches: 47, Indels: 48
0.82 0.09 0.09
Matches are distributed among these distances:
59 18 0.04
60 49 0.11
61 10 0.02
62 202 0.46
63 20 0.05
64 137 0.31
65 5 0.01
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.17
Consensus pattern (60 bp):
ATCGCAACGCGATTTCCAAGAATCGCAACGCGATTCAGAAAATCGCAACGCGATAAGAAG
Found at i:74884 original size:6 final size:6
Alignment explanation
Indices: 74875--74977 Score: 183
Period size: 6 Copynumber: 17.5 Consensus size: 6
74865 TATTACTATT
74875 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
*
74923 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCCCG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
74970 ACC-CG ACC
1 ACCACG ACC
74978 CGAGACGAGA
Statistics
Matches: 96, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
5 10 0.10
6 86 0.90
ACGTcount: A:0.31, C:0.52, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:75515 original size:6 final size:6
Alignment explanation
Indices: 75474--75596 Score: 204
Period size: 6 Copynumber: 21.5 Consensus size: 6
75464 TCTCGTCTCG
75474 GGTCG- GGTCG- GGTCG- GGTCG- GGTCG- GGTCG- GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
75516 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
75564 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
75597 AATACGTGTC
Statistics
Matches: 117, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 30 0.26
6 87 0.74
ACGTcount: A:0.00, C:0.17, G:0.53, T:0.30
Consensus pattern (6 bp):
GGTCGT
Found at i:75703 original size:20 final size:20
Alignment explanation
Indices: 75678--75829 Score: 78
Period size: 20 Copynumber: 7.2 Consensus size: 20
75668 GAATTTACTC
75678 ATTTTCTGAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
75698 ATTTTCTTAATCGCGTTGCGATTGCG
1 ATTTTCTGAAT--C---GCG-TTGCG
75724 ATTTTCTGAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
* *
75744 ATTCTT-GGAAGATCGTGTTGCG
1 ATT-TTCTG-A-ATCGCGTTGCG
* ** *
75766 ATCTTCT-TTTCAACGTTGCG
1 ATTTTCTGAATC-GCGTTGCG
* * *
75786 CTTTTCTAAATCACGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
75806 -GTTT-TGATATCGCGTTGCG
1 ATTTTCTGA-ATCGCGTTGCG
75825 ATTTT
1 ATTTT
75830 GTTGGTCATT
Statistics
Matches: 100, Mismatches: 18, Indels: 28
0.68 0.12 0.19
Matches are distributed among these distances:
18 2 0.02
19 15 0.15
20 41 0.41
21 10 0.10
22 13 0.13
24 1 0.01
25 3 0.03
26 15 0.15
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
ATTTTCTGAATCGCGTTGCG
Found at i:75723 original size:26 final size:26
Alignment explanation
Indices: 75693--75746 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
75683 CTGAATCGCG
*
75693 TTGCGATTTTCTTAATCGCGTTGCGA
1 TTGCGATTTTCTGAATCGCGTTGCGA
75719 TTGCGATTTTCTGAATCGCGTTGCGA
1 TTGCGATTTTCTGAATCGCGTTGCGA
75745 TT
1 TT
75747 CTTGGAAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.15, C:0.19, G:0.24, T:0.43
Consensus pattern (26 bp):
TTGCGATTTTCTGAATCGCGTTGCGA
Found at i:87034 original size:26 final size:27
Alignment explanation
Indices: 86982--87034 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
86972 AAGAGAAAAA
**
86982 CCTCCTTCTCATTCTCTCTCAGGTTCC
1 CCTCCTTCTCATTCTCTCTCAAATTCC
87009 CCTCTCTTCTC-TT-TCTCTCAAATTCC
1 CCTC-CTTCTCATTCTCTCTCAAATTCC
87035 TACATTGAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 11 0.48
27 6 0.26
28 6 0.26
ACGTcount: A:0.09, C:0.43, G:0.04, T:0.43
Consensus pattern (27 bp):
CCTCCTTCTCATTCTCTCTCAAATTCC
Found at i:89827 original size:19 final size:21
Alignment explanation
Indices: 89798--89837 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
89788 TTGTATGTAG
89798 TAGACTCAATTTATC-TTTTC
1 TAGACTCAATTTATCATTTTC
89818 TAGA-TCAATTTATCATTTTC
1 TAGACTCAATTTATCATTTTC
89838 GTCCCATCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.28, C:0.17, G:0.05, T:0.50
Consensus pattern (21 bp):
TAGACTCAATTTATCATTTTC
Done.