genome.fa.s5643.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005643.1 Hibiscus syriacus cultivar Beakdansim tig00013156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42359

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771--823	23	2.2	24	86	3	72	41	20	16	20	1.90
1812--1881	20	3.5	20	92	1	115	32	24	24	18	1.97
1907--1971	19	3.7	19	86	13	95	13	21	18	46	1.84
1977--2015	20	2.0	20	94	0	69	12	10	30	46	1.75
2098--2134	14	2.6	14	86	0	56	48	21	0	29	1.50
3982--4027	20	2.3	20	84	0	56	36	23	21	17	1.94
3993--4037	20	2.3	20	88	3	74	37	17	24	20	1.93
4001--4116	19	6.6	19	69	21	83	43	22	21	12	1.87
4037--4094	14	3.9	14	75	16	62	48	25	17	8	1.75
4021--4111	32	2.8	33	91	3	157	47	23	18	10	1.80
4123--4185	14	4.3	14	72	16	56	11	14	22	52	1.72
4130--4201	33	2.2	33	92	2	119	13	16	20	48	1.80
4150--4221	19	4.0	19	74	17	64	15	22	19	43	1.88
4186--4229	20	2.2	20	92	4	72	20	25	18	36	1.95
4722--4766	18	2.5	18	88	0	72	13	15	44	26	1.83
6084--6142	20	3.0	20	87	0	73	42	22	18	16	1.89
6396--6444	22	2.3	21	93	6	82	24	12	40	22	1.88
6614--6751	61	2.3	61	84	0	186	23	16	23	35	1.95
6614--6748	20	6.7	20	78	7	112	24	17	24	34	1.96
7736--7772	19	1.9	19	88	0	56	35	29	13	21	1.92
8727--8780	24	2.2	24	93	0	90	20	18	20	40	1.91
11046--11080	18	1.9	18	94	0	61	54	25	2	17	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11381--11537	20	7.8	20	86	0	206	31	19	19	29	1.96
11392--11537	60	2.4	60	93	0	238	31	20	20	27	1.97
11576--11653	20	3.9	20	87	0	102	12	16	25	44	1.83
11756--11809	27	2.0	28	85	3	74	50	20	0	29	1.49
11773--11809	14	2.6	14	95	0	65	51	21	0	27	1.48
13095--13212	21	5.6	21	73	0	92	24	17	34	22	1.96
13108--13217	42	2.6	42	78	2	123	26	18	35	20	1.95
13777--13840	19	3.4	19	84	0	65	46	25	14	14	1.81
13860--13926	20	3.3	20	82	0	89	17	17	25	38	1.92
15845--15934	20	4.6	20	84	1	92	45	23	15	15	1.84
16342--16389	22	2.2	22	88	0	69	18	14	45	20	1.85
16353--16395	22	2.0	22	90	0	68	18	13	46	20	1.83
16582--16627	19	2.4	19	85	3	56	21	17	30	30	1.96
16593--16629	19	1.9	19	94	0	65	21	16	29	32	1.95
17102--17137	18	2.0	18	94	0	63	16	19	44	19	1.87
17927--17984	29	2.0	30	86	3	82	37	6	18	36	1.78
29166--29267	3	34.0	3	93	0	177	32	1	0	64	1.11
29690--29734	22	2.0	22	82	0	54	68	6	24	0	1.13
30594--30635	20	2.0	22	86	9	61	38	2	2	57	1.25
41921--41989	14	4.8	15	79	11	65	81	0	18	0	0.70
41927--41990	21	3.0	21	81	4	83	78	0	21	0	0.76

Tables:   1

The End!