genome.fa.s5644.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005644.1 Hibiscus syriacus cultivar Beakdansim tig00013158_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65298

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2471--2509	21	1.9	20	94	5	69	33	28	15	23	1.95
2534--2569	17	2.1	18	89	5	56	25	33	13	27	1.94
2471--2632	62	2.5	64	82	7	179	34	24	15	25	1.95
2471--2678	65	3.2	62	79	11	174	33	24	15	26	1.95
2650--2697	18	2.7	19	81	12	57	27	31	14	27	1.95
4231--4278	19	2.5	20	82	3	62	52	6	12	29	1.63
5549--5608	30	2.0	30	96	0	111	30	5	20	45	1.72
5790--5848	23	2.7	21	84	5	73	22	32	16	28	1.96
10872--11050	65	2.8	64	84	7	233	39	21	13	25	1.90
11804--11841	2	19.0	2	100	0	76	50	0	0	50	1.00
13124--13162	15	2.5	15	91	4	60	5	10	2	82	0.93
13153--13248	19	5.9	15	69	23	52	14	12	0	72	1.11
13183--13252	19	3.7	18	75	17	61	17	10	0	72	1.10
13202--13419	9	23.1	9	70	19	101	19	6	0	73	1.10
13198--13419	30	7.5	29	70	20	117	19	6	0	73	1.10
13272--13370	6	15.7	6	72	21	60	17	7	0	75	1.01
13198--13379	30	5.9	31	72	18	121	19	6	1	73	1.12
13132--13419	37	7.5	37	71	19	139	17	8	0	73	1.11
13198--13423	26	8.8	25	71	22	111	19	6	0	73	1.11
21896--22109	71	3.0	70	79	8	200	39	4	12	43	1.62
21843--22109	35	7.4	37	73	11	162	40	4	11	43	1.62
22107--22160	20	2.6	21	73	5	56	29	3	1	64	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25193--25267	21	3.6	21	75	13	82	20	17	26	36	1.94
25173--25264	42	2.2	42	90	3	141	19	17	23	39	1.92
25361--25403	6	7.2	6	100	0	86	34	48	16	0	1.46
26023--26050	5	5.6	5	100	0	56	0	39	21	39	1.54
26047--26077	6	5.2	6	100	0	62	0	16	48	35	1.46
31311--31461	35	4.4	35	90	6	247	36	22	17	23	1.95
31321--31448	66	1.9	66	98	0	247	34	21	19	24	1.96
32652--33343	216	3.2	216	92	1	1101	51	8	11	29	1.67
33091--33124	12	2.6	13	90	9	52	64	5	0	29	1.17
33408--33500	2	45.0	2	73	14	73	47	2	4	46	1.34
33415--33497	42	1.9	44	92	4	143	46	2	4	45	1.37
33409--33497	20	4.4	20	78	15	94	47	2	4	46	1.35
33492--33552	27	2.2	28	85	2	79	44	8	4	42	1.55
33550--33640	39	2.3	39	100	0	182	40	10	9	38	1.74
33575--33639	20	3.3	20	68	20	64	41	12	9	36	1.75
33633--33750	11	10.8	11	65	18	59	47	3	3	45	1.36
33758--33792	14	2.5	14	95	0	61	28	0	28	42	1.56
33841--33872	11	2.9	11	95	0	55	34	6	3	56	1.40
33830--33946	40	2.8	43	78	12	127	41	7	4	47	1.52
33858--34092	91	2.6	89	78	12	228	43	8	5	42	1.59
34078--34518	2	213.0	2	63	22	69	45	6	5	42	1.54
33919--34089	35	4.8	35	77	13	118	43	9	7	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34078--34518	7	71.0	6	64	20	69	45	6	5	42	1.54
34203--34461	18	14.4	18	69	17	137	45	5	6	42	1.53
34239--34364	51	2.5	51	92	0	207	45	5	6	42	1.53
34275--34426	9	17.7	9	66	20	51	42	5	9	42	1.61
34239--34382	51	2.8	51	86	8	179	45	5	6	42	1.54
34438--34474	15	2.4	15	90	4	56	48	8	2	40	1.47
34275--34550	111	2.5	110	77	16	250	43	7	7	42	1.60
33867--34514	18	36.3	18	66	21	119	44	7	6	41	1.57
34419--34532	35	3.2	35	87	7	142	44	8	4	42	1.55
34368--34495	20	6.2	22	73	17	91	45	7	7	40	1.58
34572--34673	22	4.8	21	76	13	84	39	5	6	48	1.54
34606--34644	20	2.0	20	89	0	60	43	7	5	43	1.55
34656--34911	31	8.2	31	73	16	158	44	4	1	50	1.31
34685--34775	43	2.2	40	86	7	119	45	6	2	46	1.41
34716--34777	14	4.4	14	74	11	54	48	8	0	43	1.32
34621--34894	131	2.1	132	81	6	308	44	4	2	48	1.36
34687--34784	21	4.6	21	73	15	85	45	5	2	46	1.36
34621--34828	66	3.2	65	79	11	219	43	5	2	48	1.40
34844--34935	20	4.5	21	71	23	72	47	1	0	51	1.07
34824--34914	43	2.1	43	84	8	114	46	2	0	51	1.13
34854--34935	28	3.0	28	84	8	100	46	0	0	53	1.00
34621--34940	131	2.5	128	78	12	289	44	4	1	49	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34844--34934	21	4.6	18	71	26	60	48	1	0	50	1.08
37290--37343	23	2.4	22	84	12	65	22	9	25	42	1.83
37912--37949	13	2.8	13	82	17	51	60	0	2	36	1.11
37928--37974	19	2.5	19	86	10	62	61	0	6	31	1.21
37929--38021	18	5.1	17	74	15	78	58	2	4	35	1.30
41582--41611	15	1.9	16	93	6	53	0	20	40	40	1.52
41703--41737	3	12.0	3	93	6	63	65	0	0	34	0.93
41705--41737	17	1.9	17	100	0	66	66	0	0	33	0.92
42344--42394	26	2.0	26	88	0	75	33	27	19	19	1.96
47515--47547	17	1.9	17	93	0	57	39	12	45	3	1.57
48915--48954	16	2.4	17	91	8	73	50	15	5	30	1.65
48978--49033	21	2.6	22	77	8	62	57	5	5	32	1.44
51746--51775	13	2.4	13	94	5	53	0	20	0	80	0.72
51766--51809	23	1.9	23	90	9	72	6	13	15	63	1.49
51766--51815	23	2.1	23	85	10	66	10	14	14	62	1.55
55291--55390	23	4.3	23	74	5	92	24	19	23	34	1.97
58518--58572	25	2.2	25	83	6	67	38	16	1	43	1.58
58552--58590	18	2.2	18	95	0	69	33	12	2	51	1.54
58578--58627	24	2.1	23	82	14	57	38	20	2	40	1.64
60678--60717	7	5.6	7	90	3	53	47	0	0	52	1.00
62020--62074	2	27.5	2	90	7	85	45	0	3	50	1.19
63004--63041	18	2.2	18	86	13	53	15	2	7	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63526--63553	13	2.2	13	100	0	56	42	0	7	50	1.30
63913--63970	23	2.5	24	82	2	73	50	1	0	48	1.11
63929--63967	15	2.5	15	83	4	51	43	2	0	53	1.14
64993--65047	13	4.2	13	85	0	74	29	21	12	36	1.91
65207--65233	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1

The End!