genome.fa.s5645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005645.1 Hibiscus syriacus cultivar Beakdansim tig00013163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65510

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118--161	18	2.4	18	88	0	70	50	11	20	18	1.77
1747--1887	73	2.0	71	86	5	196	33	27	12	26	1.92
4078--4105	2	14.0	2	100	0	56	50	0	0	50	1.00
6065--6185	22	5.5	22	78	11	86	36	16	17	29	1.92
6065--6185	44	2.8	44	79	5	120	36	16	17	29	1.92
8211--8250	21	1.9	19	85	14	53	57	0	35	7	1.27
9677--9712	18	2.0	18	100	0	72	38	22	5	33	1.77
10300--10339	20	2.0	21	95	5	73	42	0	0	57	0.98
10800--10864	33	2.0	32	93	3	112	29	23	6	41	1.78
11496--11534	17	2.3	17	86	0	51	30	0	0	69	0.89
13972--14014	13	3.1	14	83	10	61	69	0	16	13	1.19
14539--14590	19	2.6	21	90	6	81	46	5	13	34	1.67
16824--16865	21	2.0	21	81	9	50	19	14	4	61	1.49
17649--17687	19	2.1	19	90	9	62	61	2	25	10	1.41
18077--18105	15	1.9	15	100	0	58	68	0	17	13	1.20
19638--19682	2	22.5	2	100	0	90	51	0	0	48	1.00
19842--19913	24	3.0	24	81	4	92	52	18	13	15	1.74
19842--19933	48	1.9	48	84	8	125	51	16	15	17	1.77
24416--24463	24	2.0	24	87	0	69	52	16	12	18	1.75
26970--27043	18	4.1	18	98	0	139	10	18	48	21	1.78
26947--26989	13	3.3	13	90	0	68	16	20	44	18	1.87
31025--31194	61	2.8	60	69	17	134	26	9	24	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30927--31245	122	2.6	122	82	3	347	27	10	23	38	1.88
31167--31974	220	3.7	220	83	4	1004	27	14	24	32	1.95
32177--32366	103	1.8	103	89	2	301	35	11	18	34	1.87
38538--38572	2	18.0	2	94	5	63	51	0	0	48	1.00
41246--41341	35	2.8	36	88	3	117	33	16	23	26	1.96
41267--41343	35	2.2	35	95	0	136	35	16	20	27	1.95
41469--41634	54	3.1	54	89	6	264	40	6	18	35	1.75
42105--42149	22	2.0	22	95	0	81	28	22	20	28	1.98
45934--45978	24	1.9	23	90	4	72	57	13	13	15	1.65
50101--50149	25	2.0	25	91	0	80	34	16	22	26	1.95
51104--51171	31	2.2	31	89	0	100	32	19	13	35	1.90
51342--51380	18	2.1	19	85	4	53	35	10	2	51	1.50
52247--52292	23	2.0	23	95	0	83	56	13	2	28	1.48
56469--56499	14	2.1	15	94	5	55	32	0	0	67	0.91
57642--57740	47	2.1	48	83	5	121	33	14	9	43	1.76
57572--57797	112	2.0	112	92	0	380	35	13	10	40	1.79
58097--58145	26	1.9	25	83	4	62	28	16	30	24	1.96
58538--59435	216	4.2	216	87	3	1298	50	8	11	29	1.68
59554--59664	13	8.9	13	68	18	58	45	5	4	45	1.47
59554--59616	18	3.6	18	79	10	67	46	4	1	47	1.33
59603--59670	26	2.5	26	86	9	84	45	5	5	42	1.52
59573--59671	13	7.1	14	71	22	68	46	6	5	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60026--60065	21	1.9	21	90	10	64	47	7	2	42	1.45
60343--60481	6	23.7	6	68	19	71	48	1	0	49	1.15
60282--60446	31	5.8	28	71	16	99	47	3	0	47	1.24
60368--60486	23	5.2	23	75	17	90	48	0	0	50	1.06
60414--60485	13	5.8	13	73	20	66	48	0	0	51	1.00
63770--63816	24	2.0	23	84	16	60	17	17	8	57	1.63
64518--65174	182	3.6	181	87	2	910	43	13	15	27	1.84

Tables:   1

The End!